Wall clock time and date at job start Tue Mar 31 2020 12:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.39025 * 2 1 4 4 C 1.54568 * 110.44263 * 237.44565 * 2 1 3 5 5 C 1.54494 * 102.14574 * 268.10842 * 4 2 1 6 6 H 1.08994 * 110.46132 * 225.76481 * 5 4 2 7 7 N 1.46505 * 110.36800 * 103.49231 * 5 4 2 8 8 C 1.34767 * 120.00292 * 158.14870 * 7 5 4 9 9 O 1.21286 * 119.99863 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00351 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.47333 * 179.97438 * 10 8 7 12 12 C 1.37637 * 120.12582 * 265.02190 * 11 10 8 13 13 C 1.38613 * 120.24532 * 179.97438 * 12 11 10 14 14 C 1.38655 * 120.50458 * 0.03903 * 13 12 11 15 15 C 1.37606 * 120.24501 * 359.67855 * 14 13 12 16 16 C 1.40699 * 120.12481 * 84.99518 * 11 10 8 17 17 C 1.41386 * 120.24649 * 0.02754 * 16 11 10 18 18 H 1.08001 * 120.00306 * 334.05567 * 17 16 11 19 19 C 1.39950 * 119.99963 * 154.05405 * 17 16 11 20 20 N 1.30814 * 120.00036 * 334.85749 * 19 17 16 21 21 Si 1.86808 * 119.99857 * 154.85871 * 19 17 16 22 22 H 1.48494 * 109.46998 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47205 * 60.00043 * 21 19 17 24 24 H 1.48494 * 109.46890 * 300.00019 * 21 19 17 25 25 C 1.51322 * 104.82413 * 344.65396 * 5 4 2 26 26 O 1.20824 * 125.09564 * 177.68075 * 25 5 4 27 27 O 1.34065 * 109.80943 * 357.68624 * 25 5 4 28 28 H 1.08998 * 109.47405 * 299.03575 * 1 2 3 29 29 H 1.09004 * 109.47435 * 59.02928 * 1 2 3 30 30 H 1.09003 * 109.47437 * 179.03065 * 1 2 3 31 31 H 1.09007 * 109.46644 * 180.97030 * 3 2 1 32 32 H 1.08992 * 109.47180 * 300.96374 * 3 2 1 33 33 H 1.08994 * 109.47081 * 60.96949 * 3 2 1 34 34 H 1.09000 * 110.87405 * 149.94294 * 4 2 1 35 35 H 1.09006 * 110.86647 * 26.26827 * 4 2 1 36 36 H 0.97001 * 119.99784 * 338.14400 * 7 5 4 37 37 H 1.08996 * 109.47148 * 59.99944 * 10 8 7 38 38 H 1.09001 * 109.46957 * 299.99611 * 10 8 7 39 39 H 1.08003 * 119.88055 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.74906 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.87709 * 179.97438 * 14 13 12 42 42 H 1.07996 * 120.12665 * 180.29631 * 15 14 13 43 43 H 0.97001 * 120.00534 * 354.28976 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0698 -0.7793 -1.2208 5 6 2.2301 -2.2062 -0.6505 6 1 3.1934 -2.6262 -0.9397 7 7 1.1395 -3.0668 -1.1159 8 6 1.2935 -4.4056 -1.1225 9 8 2.3351 -4.8981 -0.7436 10 6 0.1715 -5.2908 -1.6007 11 6 0.5960 -6.7339 -1.5084 12 6 1.1261 -7.3697 -2.6080 13 6 1.5178 -8.6968 -2.5258 14 6 1.3802 -9.3990 -1.3381 15 6 0.8581 -8.7818 -0.2246 16 6 0.4524 -7.4362 -0.2977 17 6 -0.0909 -6.7934 0.8383 18 1 -0.0123 -5.7212 0.9414 19 6 -0.7307 -7.5466 1.8293 20 7 -1.2646 -8.7026 1.5298 21 14 -0.8223 -6.9009 3.5799 22 1 -1.5455 -7.8794 4.4311 23 1 -1.5456 -5.6040 3.5920 24 1 0.5517 -6.7064 4.1082 25 6 2.1603 -2.0332 0.8511 26 8 2.2066 -2.9323 1.6569 27 8 2.0392 -0.7326 1.1534 28 1 -0.3634 0.4988 0.8985 29 1 -0.3634 0.5288 -0.8812 30 1 -0.3634 -1.0275 -0.0174 31 1 3.1528 1.4166 -0.0174 32 1 1.6941 1.9589 -0.8811 33 1 1.7222 1.9485 0.8985 34 1 3.0314 -0.3795 -1.5425 35 1 1.3496 -0.7668 -2.0389 36 1 0.3066 -2.6729 -1.4192 37 1 -0.0667 -5.0481 -2.6362 38 1 -0.7086 -5.1301 -0.9781 39 1 1.2373 -6.8327 -3.5384 40 1 1.9332 -9.1877 -3.3935 41 1 1.6883 -10.4327 -1.2855 42 1 0.7562 -9.3291 0.7008 43 1 -1.2906 -9.0004 0.6070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777425907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:38 Heat of formation + Delta-G solvation = -109.029575 kcal Electronic energy + Delta-G solvation = -27034.863580 eV Core-core repulsion = 23237.382888 eV Total energy + Delta-G solvation = -3797.480692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47526 -39.12632 -37.71778 -37.46278 -34.87382 -33.78412 -33.51488 -31.89310 -30.09490 -29.15951 -27.90144 -26.78034 -24.93999 -24.51866 -21.98429 -21.22841 -20.88399 -20.21523 -19.60251 -17.71787 -17.04738 -16.91755 -16.58188 -15.92266 -15.48782 -15.03588 -14.73196 -14.49956 -14.08141 -14.03893 -13.88714 -13.68946 -13.30698 -13.17354 -12.94239 -12.67203 -12.42720 -12.28243 -12.18657 -11.97373 -11.88829 -11.68907 -11.28919 -11.16172 -11.12776 -10.78672 -10.74144 -10.51760 -10.39670 -10.29877 -9.60982 -9.32255 -9.28087 -8.89411 -8.85586 -7.51161 -7.44338 -7.06060 -4.34963 2.00513 2.79595 2.91613 3.03320 3.18627 3.25105 3.37255 3.47292 3.49147 3.82904 3.95805 4.10833 4.20267 4.33906 4.52709 4.65973 4.97621 5.12561 5.14010 5.27239 5.31382 5.33950 5.40919 5.54057 5.65211 5.70113 5.75309 5.91466 6.04973 6.19730 6.33182 6.39887 6.43498 6.71855 6.75070 7.05147 7.26495 7.48213 7.56792 7.66961 7.79261 7.89645 7.92931 8.00962 8.27267 8.40788 8.72775 8.85463 8.99045 10.14377 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.004517 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.816137 B = 6196.999022 C = 7582.865371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 C -0.142 4.142 4 C -0.153 4.153 5 C 0.090 3.910 6 H 0.126 0.874 7 N -0.731 5.731 8 C 0.514 3.486 9 O -0.500 6.500 10 C -0.066 4.066 11 C -0.188 4.188 12 C -0.068 4.068 13 C -0.255 4.255 14 C -0.086 4.086 15 C -0.215 4.215 16 C 0.117 3.883 17 C -0.512 4.512 18 H 0.073 0.927 19 C 0.042 3.958 20 N -0.799 5.799 21 Si 1.057 2.943 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.273 1.273 25 C 0.462 3.538 26 O -0.418 6.418 27 O -0.343 6.343 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.399 0.601 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 19.847 -6.877 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.065 3.935 3 C -0.199 4.199 4 C -0.191 4.191 5 C -0.018 4.018 6 H 0.144 0.856 7 N -0.389 5.389 8 C 0.302 3.698 9 O -0.372 6.372 10 C -0.106 4.106 11 C -0.190 4.190 12 C -0.086 4.086 13 C -0.274 4.274 14 C -0.104 4.104 15 C -0.234 4.234 16 C 0.114 3.886 17 C -0.540 4.540 18 H 0.091 0.909 19 C -0.179 4.179 20 N -0.422 5.422 21 Si 0.881 3.119 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.198 1.198 25 C 0.297 3.703 26 O -0.296 6.296 27 O -0.261 6.261 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.052 18.659 -4.455 19.213 hybrid contribution 0.257 0.541 -1.777 1.875 sum 1.310 19.200 -6.232 20.229 Atomic orbital electron populations 1.22296 0.92720 1.03628 1.03935 1.23066 0.94705 0.93089 0.82620 1.21862 1.02216 0.92316 1.03501 1.23341 1.04433 0.93159 0.98157 1.22037 0.96041 0.91990 0.91697 0.85597 1.46091 1.16996 1.06564 1.69257 1.21415 0.90287 0.81036 0.77069 1.90722 1.28972 1.73540 1.43924 1.20224 0.96440 0.93148 1.00743 1.18965 1.12399 0.93356 0.94305 1.20333 0.97656 0.94467 0.96150 1.20240 1.14011 0.95549 0.97624 1.20604 0.98647 0.97420 0.93754 1.21138 1.07779 0.96841 0.97613 1.17384 0.88805 0.91315 0.91054 1.20470 1.33174 0.96795 1.03600 0.90906 1.26901 0.91642 0.93493 1.05897 1.70455 1.28363 1.18314 1.25090 0.83748 0.78108 0.76243 0.73771 1.19911 1.20252 1.19834 1.23636 0.73441 0.81466 0.91722 1.90828 1.41652 1.40389 1.56752 1.87106 1.77410 1.21204 1.40343 0.90731 0.89944 0.91614 0.91180 0.90020 0.91023 0.87888 0.87711 0.76555 0.90446 0.88579 0.89643 0.89491 0.89405 0.87806 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 8.77 37.16 0.33 -0.87 16 2 C 0.10 0.84 1.24 -89.80 -0.11 0.73 16 3 C -0.14 -0.79 8.92 37.16 0.33 -0.45 16 4 C -0.15 -1.12 5.91 -25.12 -0.15 -1.27 16 5 C 0.09 1.17 3.27 -67.99 -0.22 0.95 16 6 H 0.13 1.78 7.65 -51.93 -0.40 1.38 16 7 N -0.73 -10.21 5.11 -53.87 -0.28 -10.48 16 8 C 0.51 10.07 7.45 -10.99 -0.08 9.99 16 9 O -0.50 -12.33 15.73 5.55 0.09 -12.24 16 10 C -0.07 -1.28 5.18 -29.03 -0.15 -1.43 16 11 C -0.19 -4.57 4.43 -103.91 -0.46 -5.03 16 12 C -0.07 -1.56 9.66 -39.66 -0.38 -1.94 16 13 C -0.25 -5.96 10.05 -39.29 -0.39 -6.35 16 14 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 15 C -0.21 -5.81 7.95 -38.87 -0.31 -6.12 16 16 C 0.12 3.20 5.28 -106.83 -0.56 2.64 16 17 C -0.51 -14.13 8.07 -37.74 -0.30 -14.43 16 18 H 0.07 2.02 6.74 -52.49 -0.35 1.67 16 19 C 0.04 1.13 4.94 -17.34 -0.09 1.04 16 20 N -0.80 -21.82 12.34 55.55 0.69 -21.13 16 21 Si 1.06 23.71 30.00 -169.99 -5.10 18.61 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.46 7.66 8.03 36.31 0.29 7.95 16 26 O -0.42 -9.32 18.00 -18.41 -0.33 -9.65 16 27 O -0.34 -4.62 10.48 -38.48 -0.40 -5.02 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 31 H 0.07 0.38 8.13 -51.92 -0.42 -0.04 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.57 7.92 -51.93 -0.41 0.16 16 35 H 0.10 0.53 7.62 -51.93 -0.40 0.13 16 36 H 0.40 4.05 7.94 -40.82 -0.32 3.72 16 37 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 38 H 0.10 1.88 7.06 -51.93 -0.37 1.51 16 39 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.10 2.90 6.54 -52.49 -0.34 2.56 16 43 H 0.30 8.29 6.69 -40.82 -0.27 8.02 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -35.97 360.81 -8.42 -44.38 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.85 Total: 7.23 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -2.67 Total: -17.12 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.41 Total: -31.61 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.65 Total: -26.92 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.10 Total: 18.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.97 -8.42 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777425907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.646 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds