Wall clock time and date at job start Tue Mar 31 2020 12:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.39025 * 2 1 4 4 C 1.54568 * 110.44263 * 237.44565 * 2 1 3 5 5 C 1.54494 * 102.14574 * 268.10842 * 4 2 1 6 6 H 1.08994 * 110.46132 * 225.76481 * 5 4 2 7 7 N 1.46505 * 110.36800 * 103.49231 * 5 4 2 8 8 C 1.34767 * 120.00292 * 158.14870 * 7 5 4 9 9 O 1.21286 * 119.99863 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00351 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.47333 * 179.97438 * 10 8 7 12 12 C 1.37637 * 120.12582 * 265.02190 * 11 10 8 13 13 C 1.38613 * 120.24532 * 179.97438 * 12 11 10 14 14 C 1.38655 * 120.50458 * 0.03903 * 13 12 11 15 15 C 1.37606 * 120.24501 * 359.67855 * 14 13 12 16 16 C 1.40699 * 120.12481 * 84.99518 * 11 10 8 17 17 C 1.41386 * 120.24649 * 0.02754 * 16 11 10 18 18 H 1.08001 * 120.00306 * 334.05567 * 17 16 11 19 19 C 1.39950 * 119.99963 * 154.05405 * 17 16 11 20 20 N 1.30814 * 120.00036 * 334.85749 * 19 17 16 21 21 Si 1.86808 * 119.99857 * 154.85871 * 19 17 16 22 22 H 1.48494 * 109.46998 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47205 * 60.00043 * 21 19 17 24 24 H 1.48494 * 109.46890 * 300.00019 * 21 19 17 25 25 C 1.51322 * 104.82413 * 344.65396 * 5 4 2 26 26 O 1.20824 * 125.09564 * 177.68075 * 25 5 4 27 27 O 1.34065 * 109.80943 * 357.68624 * 25 5 4 28 28 H 1.08998 * 109.47405 * 299.03575 * 1 2 3 29 29 H 1.09004 * 109.47435 * 59.02928 * 1 2 3 30 30 H 1.09003 * 109.47437 * 179.03065 * 1 2 3 31 31 H 1.09007 * 109.46644 * 180.97030 * 3 2 1 32 32 H 1.08992 * 109.47180 * 300.96374 * 3 2 1 33 33 H 1.08994 * 109.47081 * 60.96949 * 3 2 1 34 34 H 1.09000 * 110.87405 * 149.94294 * 4 2 1 35 35 H 1.09006 * 110.86647 * 26.26827 * 4 2 1 36 36 H 0.97001 * 119.99784 * 338.14400 * 7 5 4 37 37 H 1.08996 * 109.47148 * 59.99944 * 10 8 7 38 38 H 1.09001 * 109.46957 * 299.99611 * 10 8 7 39 39 H 1.08003 * 119.88055 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.74906 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.87709 * 179.97438 * 14 13 12 42 42 H 1.07996 * 120.12665 * 180.29631 * 15 14 13 43 43 H 0.97001 * 120.00534 * 354.28976 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0698 -0.7793 -1.2208 5 6 2.2301 -2.2062 -0.6505 6 1 3.1934 -2.6262 -0.9397 7 7 1.1395 -3.0668 -1.1159 8 6 1.2935 -4.4056 -1.1225 9 8 2.3351 -4.8981 -0.7436 10 6 0.1715 -5.2908 -1.6007 11 6 0.5960 -6.7339 -1.5084 12 6 1.1261 -7.3697 -2.6080 13 6 1.5178 -8.6968 -2.5258 14 6 1.3802 -9.3990 -1.3381 15 6 0.8581 -8.7818 -0.2246 16 6 0.4524 -7.4362 -0.2977 17 6 -0.0909 -6.7934 0.8383 18 1 -0.0123 -5.7212 0.9414 19 6 -0.7307 -7.5466 1.8293 20 7 -1.2646 -8.7026 1.5298 21 14 -0.8223 -6.9009 3.5799 22 1 -1.5455 -7.8794 4.4311 23 1 -1.5456 -5.6040 3.5920 24 1 0.5517 -6.7064 4.1082 25 6 2.1603 -2.0332 0.8511 26 8 2.2066 -2.9323 1.6569 27 8 2.0392 -0.7326 1.1534 28 1 -0.3634 0.4988 0.8985 29 1 -0.3634 0.5288 -0.8812 30 1 -0.3634 -1.0275 -0.0174 31 1 3.1528 1.4166 -0.0174 32 1 1.6941 1.9589 -0.8811 33 1 1.7222 1.9485 0.8985 34 1 3.0314 -0.3795 -1.5425 35 1 1.3496 -0.7668 -2.0389 36 1 0.3066 -2.6729 -1.4192 37 1 -0.0667 -5.0481 -2.6362 38 1 -0.7086 -5.1301 -0.9781 39 1 1.2373 -6.8327 -3.5384 40 1 1.9332 -9.1877 -3.3935 41 1 1.6883 -10.4327 -1.2855 42 1 0.7562 -9.3291 0.7008 43 1 -1.2906 -9.0004 0.6070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777425907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:37 Heat of formation + Delta-G solvation = -132.930742 kcal Electronic energy + Delta-G solvation = -27035.900012 eV Core-core repulsion = 23237.382888 eV Total energy + Delta-G solvation = -3798.517124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53691 -40.69016 -39.29886 -38.99557 -36.12009 -35.75629 -34.40528 -33.60067 -31.25473 -31.08540 -28.46824 -28.32659 -26.81107 -25.55346 -23.14768 -22.83855 -22.53577 -21.41794 -21.14654 -19.65869 -18.26071 -18.16378 -17.86524 -17.08437 -16.82434 -16.72689 -16.32825 -15.96024 -15.56842 -15.52004 -15.05018 -14.91020 -14.67646 -14.39430 -14.21882 -13.89901 -13.77233 -13.52058 -13.18292 -13.16454 -13.02274 -12.82223 -12.72498 -12.65209 -12.61205 -12.28482 -12.10273 -12.03946 -11.75640 -11.53361 -11.49352 -11.24686 -10.91571 -10.86399 -10.16825 -9.45527 -9.43656 -9.07936 -6.41563 0.73130 0.93157 0.97695 1.39206 1.54707 1.67001 1.70076 2.09517 2.22689 2.24571 2.68643 2.85313 3.12976 3.53427 3.56448 3.72734 3.91473 4.02291 4.18830 4.29553 4.36359 4.48482 4.57676 4.65126 4.68767 4.70357 4.75817 4.80288 4.88864 4.92017 4.97326 5.07017 5.16105 5.28291 5.31326 5.32512 5.48714 5.75894 5.78845 5.83888 5.97663 6.04557 6.28359 6.32689 6.44131 6.49795 6.84635 6.99767 7.30480 8.06192 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.004517 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.816137 B = 6196.999022 C = 7582.865371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 C -0.139 4.139 4 C -0.132 4.132 5 C 0.089 3.911 6 H 0.114 0.886 7 N -0.707 5.707 8 C 0.516 3.484 9 O -0.561 6.561 10 C -0.067 4.067 11 C -0.191 4.191 12 C -0.077 4.077 13 C -0.248 4.248 14 C -0.097 4.097 15 C -0.246 4.246 16 C 0.086 3.914 17 C -0.541 4.541 18 H 0.059 0.941 19 C 0.010 3.990 20 N -0.817 5.817 21 Si 1.098 2.902 22 H -0.259 1.259 23 H -0.258 1.258 24 H -0.286 1.286 25 C 0.460 3.540 26 O -0.495 6.495 27 O -0.357 6.357 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.421 0.579 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 23.032 -10.098 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.055 3.945 3 C -0.195 4.195 4 C -0.170 4.170 5 C -0.019 4.019 6 H 0.132 0.868 7 N -0.365 5.365 8 C 0.304 3.696 9 O -0.437 6.437 10 C -0.106 4.106 11 C -0.192 4.192 12 C -0.095 4.095 13 C -0.267 4.267 14 C -0.115 4.115 15 C -0.265 4.265 16 C 0.083 3.917 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.207 4.207 20 N -0.441 5.441 21 Si 0.917 3.083 22 H -0.183 1.183 23 H -0.183 1.183 24 H -0.212 1.212 25 C 0.299 3.701 26 O -0.379 6.379 27 O -0.275 6.275 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.260 0.740 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.098 0.902 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.623 21.934 -7.729 23.265 hybrid contribution 0.457 -0.330 -0.960 1.113 sum 1.080 21.604 -8.689 23.311 Atomic orbital electron populations 1.22393 0.91719 1.03019 1.05641 1.23663 0.95634 0.94092 0.81145 1.21939 1.02364 0.90241 1.04994 1.23483 1.07101 0.88107 0.98277 1.22208 0.95011 0.95055 0.89588 0.86839 1.45747 1.18286 1.05021 1.67459 1.21337 0.89197 0.82751 0.76301 1.90706 1.31190 1.75023 1.46742 1.20279 0.95996 0.90666 1.03667 1.19513 1.10593 0.95649 0.93485 1.20831 0.96596 0.94682 0.97360 1.20748 1.12096 0.95866 0.97956 1.20910 0.98284 0.98707 0.93644 1.21137 1.10048 0.97463 0.97872 1.17762 0.89517 0.91905 0.92474 1.20480 1.35075 0.96196 1.05195 0.92264 1.27952 0.90801 0.93304 1.08655 1.70536 1.30212 1.19229 1.24117 0.83235 0.77669 0.76938 0.70424 1.18323 1.18258 1.21181 1.24271 0.71313 0.81718 0.92772 1.90783 1.45200 1.42964 1.58908 1.87088 1.76859 1.19981 1.43532 0.91402 0.85885 0.93404 0.91058 0.86434 0.91528 0.85095 0.83994 0.73960 0.85556 0.89001 0.85547 0.86013 0.87265 0.90217 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 8.77 71.98 0.63 -1.22 16 2 C 0.09 1.20 1.24 -10.26 -0.01 1.18 16 3 C -0.14 -0.97 8.92 71.98 0.64 -0.33 16 4 C -0.13 -1.36 5.91 31.64 0.19 -1.18 16 5 C 0.09 2.19 3.27 44.95 0.15 2.33 16 6 H 0.11 3.16 7.65 -2.39 -0.02 3.14 16 7 N -0.71 -18.52 5.11 -442.73 -2.26 -20.78 16 8 C 0.52 19.95 7.45 87.66 0.65 20.60 16 9 O -0.56 -28.32 15.73 -3.05 -0.05 -28.37 16 10 C -0.07 -2.51 5.18 29.10 0.15 -2.36 16 11 C -0.19 -9.20 4.43 -19.40 -0.09 -9.28 16 12 C -0.08 -3.35 9.66 22.22 0.21 -3.14 16 13 C -0.25 -11.05 10.05 22.46 0.23 -10.82 16 14 C -0.10 -4.79 10.02 22.22 0.22 -4.57 16 15 C -0.25 -13.90 7.95 22.73 0.18 -13.72 16 16 C 0.09 4.87 5.28 -21.29 -0.11 4.75 16 17 C -0.54 -31.37 8.07 23.46 0.19 -31.18 16 18 H 0.06 3.49 6.74 -2.91 -0.02 3.47 16 19 C 0.01 0.53 4.94 85.26 0.42 0.95 16 20 N -0.82 -46.83 12.34 21.83 0.27 -46.56 16 21 Si 1.10 49.99 30.00 68.60 2.06 52.05 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 C 0.46 15.64 8.03 71.43 0.57 16.21 16 26 O -0.49 -23.59 18.00 21.64 0.39 -23.20 16 27 O -0.36 -9.47 10.48 -50.17 -0.53 -10.00 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.05 0.70 7.56 -2.39 -0.02 0.68 16 31 H 0.07 0.52 8.13 -2.38 -0.02 0.50 16 32 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.13 0.75 7.92 -2.39 -0.02 0.73 16 35 H 0.14 0.49 7.62 -2.38 -0.02 0.48 16 36 H 0.42 7.18 7.94 -92.71 -0.74 6.45 16 37 H 0.13 3.44 8.05 -2.39 -0.02 3.42 16 38 H 0.09 3.56 7.06 -2.39 -0.02 3.54 16 39 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 40 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.08 4.77 6.54 -2.91 -0.02 4.75 16 43 H 0.29 16.79 6.69 -92.71 -0.62 16.17 16 Total: -1.00 -87.67 360.81 4.56 -83.12 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.45 Total: 25.50 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 4.23 Total: -31.76 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.99 Total: -67.34 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -0.18 Total: -61.57 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.06 Total: 52.05 kcal Total: -87.67 4.56 -83.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777425907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.815 kcal (2) G-P(sol) polarization free energy of solvation -87.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds