Wall clock time and date at job start Tue Mar 31 2020 11:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00199 * 2 1 4 4 H 1.48502 * 109.47062 * 240.00061 * 3 2 1 5 5 H 1.48502 * 109.47254 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47528 * 119.99892 * 3 2 1 7 7 C 1.37878 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00502 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47582 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.47351 * 180.02562 * 10 9 7 12 12 C 1.35899 * 117.00056 * 180.02562 * 11 10 9 13 13 C 1.38804 * 120.02233 * 359.97435 * 12 11 10 14 14 C 1.38165 * 120.08903 * 180.02562 * 13 12 11 15 15 C 1.38165 * 120.12056 * 0.02562 * 14 13 12 16 16 C 1.38896 * 120.04121 * 359.68005 * 15 14 13 17 17 N 1.39924 * 120.04095 * 180.30038 * 16 15 14 18 18 C 1.34777 * 119.99601 * 213.60984 * 17 16 15 19 19 O 1.21284 * 120.00318 * 5.27544 * 18 17 16 20 20 C 1.50702 * 119.99884 * 185.26850 * 18 17 16 21 21 H 1.08999 * 109.70296 * 55.00576 * 20 18 17 22 22 C 1.53499 * 109.71101 * 294.42209 * 20 18 17 23 23 C 1.53238 * 108.17242 * 177.96656 * 22 20 18 24 24 C 1.50445 * 109.46840 * 46.74731 * 23 22 20 25 25 C 1.30681 * 122.49865 * 342.54189 * 24 23 22 26 26 O 1.35135 * 123.34253 * 0.45997 * 25 24 23 27 27 C 1.38587 * 120.01636 * 179.97438 * 12 11 10 28 28 H 0.96994 * 120.00051 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46898 * 59.99629 * 9 7 2 30 30 H 1.09004 * 109.47117 * 300.00098 * 9 7 2 31 31 H 1.09001 * 109.47109 * 60.00000 * 10 9 7 32 32 H 1.09004 * 109.47172 * 300.00307 * 10 9 7 33 33 H 1.08003 * 119.95224 * 0.04836 * 13 12 11 34 34 H 1.07993 * 119.94123 * 179.97438 * 14 13 12 35 35 H 1.08001 * 119.97913 * 179.97438 * 15 14 13 36 36 H 0.96997 * 120.00369 * 33.61590 * 17 16 15 37 37 H 1.09007 * 109.72485 * 297.58096 * 22 20 18 38 38 H 1.08998 * 109.72904 * 58.24355 * 22 20 18 39 39 H 1.08997 * 109.43929 * 286.76285 * 23 22 20 40 40 H 1.08999 * 109.47866 * 166.75850 * 23 22 20 41 41 H 1.08001 * 118.74910 * 162.52387 * 24 23 22 42 42 H 1.07999 * 118.32779 * 180.43270 * 25 24 23 43 43 H 1.07992 * 120.06727 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8997 -0.0001 12 6 2.2709 -6.0394 0.0004 13 6 3.6571 -5.9673 0.0009 14 6 4.4109 -7.1252 0.0008 15 6 3.7877 -8.3583 -0.0003 16 6 2.4009 -8.4365 0.0054 17 7 1.7698 -9.6853 0.0107 18 6 0.5957 -9.8496 -0.6304 19 8 0.1335 -8.9437 -1.2911 20 6 -0.1428 -11.1592 -0.5263 21 1 -0.3068 -11.4062 0.5226 22 6 0.6762 -12.2702 -1.1979 23 6 -0.0808 -13.5916 -1.0273 24 6 -1.5297 -13.3882 -1.3774 25 6 -2.0781 -12.2036 -1.4368 26 8 -1.4003 -11.0586 -1.2005 27 6 1.6421 -7.2744 0.0004 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 4.1470 -5.0048 0.0017 34 1 5.4892 -7.0663 0.0008 35 1 4.3792 -9.2619 -0.0007 36 1 2.1772 -10.4327 0.4758 37 1 0.7950 -12.0496 -2.2588 38 1 1.6554 -12.3427 -0.7248 39 1 -0.0002 -13.9248 0.0074 40 1 0.3502 -14.3451 -1.6866 41 1 -2.1397 -14.2543 -1.5880 42 1 -3.1263 -12.1361 -1.6879 43 1 0.5637 -7.3325 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777849693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:00 Heat of formation + Delta-G solvation = -72.552889 kcal Electronic energy + Delta-G solvation = -25169.713465 eV Core-core repulsion = 21373.814521 eV Total energy + Delta-G solvation = -3795.898944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23829 -40.08032 -39.01673 -37.13065 -34.90772 -34.23381 -33.32951 -32.29219 -30.85921 -29.60029 -29.03750 -26.66018 -25.01277 -24.25632 -23.18385 -22.17027 -21.28284 -20.25143 -19.45308 -18.62301 -17.88978 -16.90573 -16.61934 -16.23730 -15.89371 -15.58201 -15.40166 -15.33712 -15.23250 -14.77983 -14.47794 -14.25584 -13.90263 -13.46561 -13.37343 -13.19868 -12.95329 -12.72280 -12.29556 -11.95962 -11.79048 -11.67733 -11.46785 -11.42467 -11.08757 -10.89640 -10.82220 -10.54436 -10.35748 -9.88922 -9.81031 -9.62628 -9.27980 -8.85161 -8.42506 -8.29128 -7.83919 -6.06865 -4.11740 1.29037 1.61795 1.86336 2.25725 2.31758 3.28662 3.30817 3.35147 3.37005 3.80593 3.94263 4.05246 4.15208 4.37486 4.43732 4.50781 4.64575 4.83411 4.97550 5.05970 5.15586 5.17138 5.29156 5.33774 5.35012 5.42290 5.52534 5.64906 5.76802 5.83152 6.04144 6.06494 6.06775 6.22494 6.32610 6.50939 6.59623 6.75206 6.94142 7.03494 7.18110 7.54110 7.68319 7.82038 7.83874 8.09265 8.26976 8.93651 9.52189 11.04687 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002218 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.104782 B =12619.150968 C =13730.419633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.166 3.834 13 C -0.224 4.224 14 C -0.061 4.061 15 C -0.194 4.194 16 C 0.178 3.822 17 N -0.667 5.667 18 C 0.515 3.485 19 O -0.483 6.483 20 C 0.076 3.924 21 H 0.102 0.898 22 C -0.152 4.152 23 C -0.079 4.079 24 C -0.288 4.288 25 C 0.061 3.939 26 O -0.295 6.295 27 C -0.164 4.164 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.410 0.590 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.164 0.836 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 -30.357 0.876 30.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.224 6.224 12 C 0.117 3.883 13 C -0.243 4.243 14 C -0.080 4.080 15 C -0.215 4.215 16 C 0.084 3.916 17 N -0.315 5.315 18 C 0.300 3.700 19 O -0.353 6.353 20 C 0.016 3.984 21 H 0.119 0.881 22 C -0.190 4.190 23 C -0.116 4.116 24 C -0.308 4.308 25 C -0.002 4.002 26 O -0.207 6.207 27 C -0.185 4.185 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.246 0.754 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.181 0.819 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.257 -29.356 0.330 29.538 hybrid contribution 0.900 0.297 0.276 0.987 sum 4.157 -29.060 0.606 29.362 Atomic orbital electron populations 1.69968 1.06099 1.27070 1.49558 1.24998 0.94914 0.99381 0.94953 0.86538 0.79476 0.82605 0.78681 1.20103 1.21135 1.20112 1.20928 0.92988 0.90203 1.52376 0.92403 1.19129 0.94196 0.88960 0.98961 1.23362 0.97116 0.80735 0.99713 1.86201 1.36501 1.13135 1.86586 1.18945 0.89871 0.87301 0.92134 1.21405 0.93074 1.00028 1.09815 1.20663 0.99428 0.91207 0.96662 1.20599 0.91920 0.98336 1.10642 1.17223 0.91024 0.83768 0.99558 1.43242 1.22454 1.11622 1.54159 1.20167 0.81150 0.89145 0.79562 1.90844 1.65348 1.42078 1.37062 1.22202 0.84900 0.93427 0.97882 0.88053 1.22258 0.99166 0.94654 1.02894 1.20338 0.92581 0.96554 1.02110 1.22521 0.97731 0.97726 1.12791 1.22166 0.96352 0.84716 0.96994 1.86048 1.31159 1.30356 1.73156 1.20273 1.01191 0.88688 1.08298 0.92647 0.95323 0.95370 0.93015 0.93015 0.84953 0.85599 0.86024 0.75383 0.89688 0.89495 0.90779 0.90031 0.85818 0.81914 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.06 1.43 4.68 37.16 0.17 1.61 16 11 O -0.31 -6.83 10.13 -19.42 -0.20 -7.03 16 12 C 0.17 3.07 6.68 -39.24 -0.26 2.81 16 13 C -0.22 -3.52 9.04 -39.40 -0.36 -3.88 16 14 C -0.06 -0.76 10.03 -39.64 -0.40 -1.16 16 15 C -0.19 -2.23 9.96 -39.36 -0.39 -2.63 16 16 C 0.18 2.37 6.28 -83.71 -0.53 1.85 16 17 N -0.67 -6.59 5.32 -9.88 -0.05 -6.65 16 18 C 0.51 6.25 6.93 -10.98 -0.08 6.17 16 19 O -0.48 -8.47 14.21 -14.17 -0.20 -8.67 16 20 C 0.08 0.67 3.27 -27.62 -0.09 0.58 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 22 C -0.15 -0.94 5.51 -26.35 -0.15 -1.08 16 23 C -0.08 -0.41 6.23 -27.88 -0.17 -0.59 16 24 C -0.29 -1.88 9.97 -36.06 -0.36 -2.24 16 25 C 0.06 0.49 10.88 29.10 0.32 0.81 16 26 O -0.29 -3.35 9.60 -36.83 -0.35 -3.70 16 27 C -0.16 -2.82 8.59 -39.25 -0.34 -3.16 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 32 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 33 H 0.13 2.02 6.29 -52.48 -0.33 1.69 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.41 2.22 8.50 -40.82 -0.35 1.87 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.31 7.82 -51.93 -0.41 -0.10 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.14 2.64 6.42 -52.49 -0.34 2.30 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -35.38 362.83 -8.79 -44.17 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.98 Total: 0.09 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.18 Total: -14.01 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.68 Total: -32.85 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.75 Total: -19.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.38 -8.79 -44.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777849693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.378 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds