Wall clock time and date at job start Tue Mar 31 2020 11:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00199 * 2 1 4 4 H 1.48502 * 109.47062 * 240.00061 * 3 2 1 5 5 H 1.48502 * 109.47254 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47528 * 119.99892 * 3 2 1 7 7 C 1.37878 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00502 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47582 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.47351 * 180.02562 * 10 9 7 12 12 C 1.35899 * 117.00056 * 180.02562 * 11 10 9 13 13 C 1.38804 * 120.02233 * 359.97435 * 12 11 10 14 14 C 1.38165 * 120.08903 * 180.02562 * 13 12 11 15 15 C 1.38165 * 120.12056 * 0.02562 * 14 13 12 16 16 C 1.38896 * 120.04121 * 359.68005 * 15 14 13 17 17 N 1.39924 * 120.04095 * 180.30038 * 16 15 14 18 18 C 1.34777 * 119.99601 * 213.60984 * 17 16 15 19 19 O 1.21284 * 120.00318 * 5.27544 * 18 17 16 20 20 C 1.50702 * 119.99884 * 185.26850 * 18 17 16 21 21 H 1.08999 * 109.70296 * 55.00576 * 20 18 17 22 22 C 1.53499 * 109.71101 * 294.42209 * 20 18 17 23 23 C 1.53238 * 108.17242 * 177.96656 * 22 20 18 24 24 C 1.50445 * 109.46840 * 46.74731 * 23 22 20 25 25 C 1.30681 * 122.49865 * 342.54189 * 24 23 22 26 26 O 1.35135 * 123.34253 * 0.45997 * 25 24 23 27 27 C 1.38587 * 120.01636 * 179.97438 * 12 11 10 28 28 H 0.96994 * 120.00051 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46898 * 59.99629 * 9 7 2 30 30 H 1.09004 * 109.47117 * 300.00098 * 9 7 2 31 31 H 1.09001 * 109.47109 * 60.00000 * 10 9 7 32 32 H 1.09004 * 109.47172 * 300.00307 * 10 9 7 33 33 H 1.08003 * 119.95224 * 0.04836 * 13 12 11 34 34 H 1.07993 * 119.94123 * 179.97438 * 14 13 12 35 35 H 1.08001 * 119.97913 * 179.97438 * 15 14 13 36 36 H 0.96997 * 120.00369 * 33.61590 * 17 16 15 37 37 H 1.09007 * 109.72485 * 297.58096 * 22 20 18 38 38 H 1.08998 * 109.72904 * 58.24355 * 22 20 18 39 39 H 1.08997 * 109.43929 * 286.76285 * 23 22 20 40 40 H 1.08999 * 109.47866 * 166.75850 * 23 22 20 41 41 H 1.08001 * 118.74910 * 162.52387 * 24 23 22 42 42 H 1.07999 * 118.32779 * 180.43270 * 25 24 23 43 43 H 1.07992 * 120.06727 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8997 -0.0001 12 6 2.2709 -6.0394 0.0004 13 6 3.6571 -5.9673 0.0009 14 6 4.4109 -7.1252 0.0008 15 6 3.7877 -8.3583 -0.0003 16 6 2.4009 -8.4365 0.0054 17 7 1.7698 -9.6853 0.0107 18 6 0.5957 -9.8496 -0.6304 19 8 0.1335 -8.9437 -1.2911 20 6 -0.1428 -11.1592 -0.5263 21 1 -0.3068 -11.4062 0.5226 22 6 0.6762 -12.2702 -1.1979 23 6 -0.0808 -13.5916 -1.0273 24 6 -1.5297 -13.3882 -1.3774 25 6 -2.0781 -12.2036 -1.4368 26 8 -1.4003 -11.0586 -1.2005 27 6 1.6421 -7.2744 0.0004 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 4.1470 -5.0048 0.0017 34 1 5.4892 -7.0663 0.0008 35 1 4.3792 -9.2619 -0.0007 36 1 2.1772 -10.4327 0.4758 37 1 0.7950 -12.0496 -2.2588 38 1 1.6554 -12.3427 -0.7248 39 1 -0.0002 -13.9248 0.0074 40 1 0.3502 -14.3451 -1.6866 41 1 -2.1397 -14.2543 -1.5880 42 1 -3.1263 -12.1361 -1.6879 43 1 0.5637 -7.3325 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777849693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:00 Heat of formation + Delta-G solvation = -95.827602 kcal Electronic energy + Delta-G solvation = -25170.722732 eV Core-core repulsion = 21373.814521 eV Total energy + Delta-G solvation = -3796.908211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10742 -41.10032 -40.16954 -38.41726 -35.94114 -35.42923 -34.85944 -32.96424 -32.61145 -30.98588 -30.22039 -27.39474 -26.94825 -24.79248 -24.34363 -23.59655 -22.67052 -21.54185 -20.11553 -19.73202 -18.90662 -18.34712 -17.64979 -17.38211 -17.01794 -16.94757 -16.78255 -16.52777 -16.35502 -16.17131 -15.57970 -15.03018 -14.70249 -14.49751 -14.39049 -14.31527 -14.28150 -13.90840 -13.70158 -13.37931 -13.24663 -12.74305 -12.66184 -12.63861 -12.50981 -12.17647 -11.91748 -11.82708 -11.63798 -11.58443 -11.44242 -11.28006 -10.87212 -10.63072 -9.47698 -9.40048 -9.05335 -8.27368 -6.42121 0.16811 0.46322 1.29129 1.39709 1.39900 1.44990 1.47390 1.52988 2.24407 2.46828 2.69097 2.80122 3.06567 3.37408 3.51113 3.84749 3.88958 4.00603 4.13928 4.16425 4.18946 4.23734 4.24977 4.40119 4.42621 4.54931 4.66374 4.66591 4.72089 4.73334 4.94182 5.10944 5.20906 5.23838 5.29437 5.31839 5.38806 5.43016 5.49557 5.57730 5.66417 5.87434 6.04898 6.23791 6.53959 6.57289 6.72646 6.96986 7.28103 8.85922 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002218 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.104782 B =12619.150968 C =13730.419633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.026 3.974 10 C 0.085 3.915 11 O -0.347 6.347 12 C 0.123 3.877 13 C -0.232 4.232 14 C -0.051 4.051 15 C -0.169 4.169 16 C 0.178 3.822 17 N -0.646 5.646 18 C 0.511 3.489 19 O -0.549 6.549 20 C 0.077 3.923 21 H 0.129 0.871 22 C -0.146 4.146 23 C -0.081 4.081 24 C -0.273 4.273 25 C 0.027 3.973 26 O -0.336 6.336 27 C -0.190 4.190 28 H 0.267 0.733 29 H -0.007 1.007 30 H -0.004 1.004 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.436 0.564 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.172 0.828 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.062 -33.204 1.598 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.093 0.907 9 C -0.011 4.011 10 C 0.011 3.989 11 O -0.262 6.262 12 C 0.077 3.923 13 C -0.252 4.252 14 C -0.070 4.070 15 C -0.189 4.189 16 C 0.084 3.916 17 N -0.295 5.295 18 C 0.299 3.701 19 O -0.424 6.424 20 C 0.017 3.983 21 H 0.146 0.854 22 C -0.184 4.184 23 C -0.118 4.118 24 C -0.293 4.293 25 C -0.035 4.035 26 O -0.250 6.250 27 C -0.211 4.211 28 H 0.076 0.924 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.187 0.813 35 H 0.192 0.808 36 H 0.277 0.723 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.158 0.842 42 H 0.189 0.811 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.248 -32.290 1.084 33.111 hybrid contribution -0.349 0.955 0.048 1.018 sum 6.898 -31.335 1.131 32.105 Atomic orbital electron populations 1.70136 1.08233 1.28345 1.50534 1.26134 0.95866 1.03982 0.94096 0.85266 0.78030 0.76780 0.79547 1.18739 1.20857 1.18529 1.21365 0.93923 0.90764 1.52276 0.90719 1.18984 0.94632 0.91734 0.95724 1.22905 0.95361 0.79862 1.00810 1.86101 1.37927 1.14024 1.88135 1.19257 0.91336 0.86186 0.95517 1.21556 0.91705 1.01756 1.10136 1.21180 1.01316 0.90121 0.94337 1.21155 0.90852 1.00063 1.06796 1.17380 0.91996 0.83709 0.98538 1.43091 1.21761 1.11218 1.53414 1.20967 0.81198 0.89700 0.78255 1.90827 1.66964 1.44497 1.40100 1.22371 0.84451 0.91927 0.99508 0.85351 1.22300 1.00485 0.93874 1.01694 1.20476 0.91288 0.96196 1.03827 1.22885 0.98849 0.97423 1.10099 1.22452 0.97038 0.84649 0.99341 1.85989 1.32464 1.32408 1.74169 1.20246 1.00121 0.90192 1.10519 0.92441 0.98886 0.98519 0.91502 0.92018 0.84842 0.81333 0.80809 0.72273 0.91685 0.86039 0.88543 0.88424 0.84161 0.81131 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.98 44.46 29.54 68.60 2.03 46.48 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.03 1.53 5.34 29.85 0.16 1.69 16 10 C 0.08 3.95 4.68 71.98 0.34 4.29 16 11 O -0.35 -16.54 10.13 -92.42 -0.94 -17.48 16 12 C 0.12 4.81 6.68 22.49 0.15 4.96 16 13 C -0.23 -7.13 9.04 22.39 0.20 -6.92 16 14 C -0.05 -1.08 10.03 22.23 0.22 -0.86 16 15 C -0.17 -3.13 9.96 22.41 0.22 -2.90 16 16 C 0.18 4.52 6.28 38.14 0.24 4.76 16 17 N -0.65 -11.52 5.32 -303.55 -1.61 -13.14 16 18 C 0.51 12.54 6.93 87.66 0.61 13.15 16 19 O -0.55 -20.83 14.21 15.82 0.22 -20.60 16 20 C 0.08 1.28 3.27 30.02 0.10 1.38 16 21 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 22 C -0.15 -1.41 5.51 30.84 0.17 -1.24 16 23 C -0.08 -0.57 6.23 29.85 0.19 -0.38 16 24 C -0.27 -3.04 9.97 25.89 0.26 -2.78 16 25 C 0.03 0.44 10.88 68.11 0.74 1.18 16 26 O -0.34 -8.00 9.60 -65.26 -0.63 -8.63 16 27 C -0.19 -6.93 8.59 22.49 0.19 -6.74 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.07 2.85 7.66 -2.39 -0.02 2.83 16 32 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 33 H 0.13 3.97 6.29 -2.91 -0.02 3.95 16 34 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.44 2.92 8.50 -92.71 -0.79 2.13 16 37 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.12 0.29 7.82 -2.39 -0.02 0.27 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.11 4.52 6.42 -2.91 -0.02 4.50 16 Total: -1.00 -86.22 362.83 4.08 -82.14 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.24 Total: 11.40 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.48 Total: -21.64 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.33 Total: -71.68 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.34 Total: -46.70 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -86.22 4.08 -82.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777849693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.687 kcal (2) G-P(sol) polarization free energy of solvation -86.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds