Wall clock time and date at job start Tue Mar 31 2020 11:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48499 * 109.47278 * 240.00348 * 3 2 1 5 5 H 1.48500 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46974 * 120.00616 * 3 2 1 7 7 C 1.37885 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47060 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.35902 * 116.99438 * 180.02562 * 11 10 9 13 13 C 1.38805 * 120.02753 * 359.97438 * 12 11 10 14 14 C 1.38159 * 120.08980 * 179.70395 * 13 12 11 15 15 C 1.38171 * 120.12269 * 0.29743 * 14 13 12 16 16 C 1.38886 * 120.03863 * 359.95636 * 15 14 13 17 17 N 1.39921 * 120.03811 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00274 * 33.33301 * 17 16 15 19 19 O 1.21284 * 120.00193 * 5.27418 * 18 17 16 20 20 C 1.50705 * 120.00054 * 185.27694 * 18 17 16 21 21 H 1.08996 * 109.70290 * 304.99830 * 20 18 17 22 22 C 1.53505 * 109.70639 * 65.57938 * 20 18 17 23 23 C 1.53254 * 108.15609 * 182.08639 * 22 20 18 24 24 C 1.50437 * 109.44140 * 313.17650 * 23 22 20 25 25 C 1.30682 * 122.49844 * 17.46317 * 24 23 22 26 26 O 1.35157 * 123.35936 * 359.65584 * 25 24 23 27 27 C 1.38589 * 120.01646 * 180.23189 * 12 11 10 28 28 H 0.97003 * 120.00183 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47499 * 60.00329 * 9 7 2 30 30 H 1.08995 * 109.47726 * 299.99496 * 9 7 2 31 31 H 1.08997 * 109.46971 * 59.99497 * 10 9 7 32 32 H 1.09007 * 109.46725 * 300.00224 * 10 9 7 33 33 H 1.08003 * 119.95326 * 359.97438 * 13 12 11 34 34 H 1.08000 * 119.94352 * 180.27388 * 14 13 12 35 35 H 1.08005 * 119.97837 * 179.97438 * 15 14 13 36 36 H 0.97001 * 119.99969 * 213.32959 * 17 16 15 37 37 H 1.09000 * 109.72615 * 301.75198 * 22 20 18 38 38 H 1.09001 * 109.72405 * 62.37828 * 22 20 18 39 39 H 1.09000 * 109.47276 * 73.17075 * 23 22 20 40 40 H 1.08997 * 109.47388 * 193.17859 * 23 22 20 41 41 H 1.07999 * 118.75354 * 197.47855 * 24 23 22 42 42 H 1.08002 * 118.33384 * 179.60935 * 25 24 23 43 43 H 1.08002 * 120.06023 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 8 1.5307 -4.8997 -0.0011 12 6 2.2709 -6.0394 -0.0007 13 6 3.6571 -5.9673 -0.0002 14 6 4.4109 -7.1251 0.0064 15 6 3.7877 -8.3583 0.0064 16 6 2.4010 -8.4365 0.0007 17 7 1.7699 -9.6853 0.0012 18 6 2.3335 -10.7250 0.6477 19 8 3.3367 -10.5566 1.3082 20 6 1.7173 -12.0968 0.5498 21 1 0.6714 -12.0523 0.8535 22 6 1.8156 -12.6066 -0.8948 23 6 1.1337 -13.9772 -0.9650 24 6 1.6036 -14.8296 0.1821 25 6 2.1866 -14.3265 1.2379 26 8 2.4270 -13.0059 1.3958 27 6 1.6422 -7.2745 -0.0061 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5572 0.8896 31 1 2.8719 -3.6044 0.8894 32 1 2.8719 -3.6044 -0.8906 33 1 4.1470 -5.0048 -0.0006 34 1 5.4893 -7.0663 0.0113 35 1 4.3792 -9.2620 0.0112 36 1 0.9268 -9.8028 -0.4637 37 1 1.3122 -11.9104 -1.5656 38 1 2.8631 -12.7010 -1.1810 39 1 0.0530 -13.8490 -0.9037 40 1 1.3892 -14.4624 -1.9070 41 1 1.4536 -15.8979 0.1310 42 1 2.4914 -15.0003 2.0251 43 1 0.5637 -7.3325 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777849694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:03 Heat of formation + Delta-G solvation = -73.948642 kcal Electronic energy + Delta-G solvation = -24955.566525 eV Core-core repulsion = 21159.607056 eV Total energy + Delta-G solvation = -3795.959468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28611 -40.11092 -39.11022 -37.09710 -34.96695 -34.28654 -33.38010 -32.31072 -30.92176 -29.71066 -28.95042 -26.69415 -25.08474 -24.29026 -22.85938 -22.68087 -21.14151 -20.35137 -19.48257 -18.50252 -18.04408 -16.96606 -16.64958 -16.34394 -15.89826 -15.73644 -15.44857 -15.34907 -15.09716 -14.80001 -14.50594 -14.27372 -13.96495 -13.53277 -13.47385 -13.24923 -12.97185 -12.76067 -12.32682 -12.08675 -11.78507 -11.68653 -11.50152 -11.36920 -11.13986 -10.92583 -10.83033 -10.55734 -10.36850 -10.02007 -9.81880 -9.67128 -9.32760 -8.90674 -8.47219 -8.37851 -7.81638 -6.11391 -4.16115 1.24718 1.63646 1.80124 2.16736 2.29117 3.24459 3.28344 3.32801 3.34680 3.82504 3.90960 4.02583 4.06391 4.34238 4.40644 4.45986 4.60646 4.79888 4.97148 5.04493 5.13016 5.25024 5.30666 5.32629 5.32857 5.43699 5.49752 5.61566 5.70220 5.75005 6.01346 6.01676 6.02589 6.22520 6.28808 6.51190 6.58334 6.70418 6.90923 7.02018 7.12836 7.48067 7.62208 7.74876 7.79145 8.02402 8.22335 8.89183 9.48213 11.00075 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.001906 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.406702 B =14688.135372 C =15035.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.314 6.314 12 C 0.164 3.836 13 C -0.221 4.221 14 C -0.061 4.061 15 C -0.169 4.169 16 C 0.177 3.823 17 N -0.665 5.665 18 C 0.519 3.481 19 O -0.492 6.492 20 C 0.076 3.924 21 H 0.101 0.899 22 C -0.151 4.151 23 C -0.080 4.080 24 C -0.285 4.285 25 C 0.058 3.942 26 O -0.296 6.296 27 C -0.187 4.187 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.411 0.589 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.163 0.837 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -29.241 -2.450 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.227 6.227 12 C 0.116 3.884 13 C -0.241 4.241 14 C -0.080 4.080 15 C -0.189 4.189 16 C 0.084 3.916 17 N -0.312 5.312 18 C 0.305 3.695 19 O -0.364 6.364 20 C 0.015 3.985 21 H 0.119 0.881 22 C -0.189 4.189 23 C -0.117 4.117 24 C -0.304 4.304 25 C -0.005 4.005 26 O -0.209 6.209 27 C -0.208 4.208 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.247 0.753 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.180 0.820 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.695 -28.929 -1.820 29.111 hybrid contribution -0.007 0.772 -0.362 0.853 sum 2.688 -28.157 -2.182 28.369 Atomic orbital electron populations 1.69962 1.06103 1.27097 1.49589 1.24989 0.94913 0.99387 0.94881 0.86540 0.79494 0.82560 0.78734 1.20087 1.21120 1.20083 1.20934 0.93040 0.90200 1.52402 0.92373 1.19126 0.94175 0.88992 0.98874 1.23367 0.97118 0.80605 0.99834 1.86164 1.36542 1.13164 1.86835 1.18807 0.89914 0.87084 0.92575 1.21412 0.93088 0.99998 1.09583 1.20781 0.99644 0.91257 0.96289 1.20883 0.92582 0.98606 1.06869 1.17211 0.91615 0.83154 0.99601 1.43244 1.26095 1.08188 1.53694 1.20106 0.84952 0.85238 0.79227 1.90783 1.24015 1.84036 1.37523 1.22189 0.96452 0.87562 0.92248 0.88123 1.22253 1.03648 0.98568 0.94447 1.20353 1.00053 0.93354 0.97929 1.22541 1.10037 1.01157 0.96684 1.22143 0.97458 0.83139 0.97780 1.86027 1.63163 1.14331 1.57374 1.19965 1.00058 0.88863 1.11895 0.92645 0.95385 0.95391 0.92969 0.92976 0.84948 0.85632 0.85234 0.75273 0.89290 0.89731 0.90668 0.89949 0.85808 0.81976 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.06 1.37 4.68 37.16 0.17 1.54 16 11 O -0.31 -6.33 10.13 -19.43 -0.20 -6.53 16 12 C 0.16 2.81 6.68 -39.24 -0.26 2.55 16 13 C -0.22 -3.48 9.03 -39.40 -0.36 -3.83 16 14 C -0.06 -0.85 10.03 -39.64 -0.40 -1.25 16 15 C -0.17 -2.38 8.65 -39.37 -0.34 -2.72 16 16 C 0.18 2.36 6.28 -83.72 -0.53 1.83 16 17 N -0.67 -6.53 5.32 -9.88 -0.05 -6.58 16 18 C 0.52 5.79 6.93 -10.98 -0.08 5.71 16 19 O -0.49 -7.64 14.20 -14.17 -0.20 -7.84 16 20 C 0.08 0.61 3.27 -27.62 -0.09 0.52 16 21 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 22 C -0.15 -0.90 5.51 -26.34 -0.15 -1.04 16 23 C -0.08 -0.40 6.23 -27.88 -0.17 -0.57 16 24 C -0.28 -1.69 9.97 -36.07 -0.36 -2.05 16 25 C 0.06 0.41 10.88 29.10 0.32 0.73 16 26 O -0.30 -3.03 9.60 -36.89 -0.35 -3.38 16 27 C -0.19 -2.73 9.90 -39.25 -0.39 -3.12 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.05 1.04 7.66 -51.92 -0.40 0.64 16 33 H 0.13 2.02 6.29 -52.48 -0.33 1.69 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.83 6.41 -52.48 -0.34 1.49 16 36 H 0.41 2.49 8.82 -40.82 -0.36 2.13 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.80 363.47 -8.81 -42.61 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.01 Total: 0.13 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -3.18 Total: -14.49 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.68 Total: -32.14 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.75 Total: -17.75 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.80 -8.81 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777849694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.340 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds