Wall clock time and date at job start Tue Mar 31 2020 11:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48499 * 109.47278 * 240.00348 * 3 2 1 5 5 H 1.48500 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46974 * 120.00616 * 3 2 1 7 7 C 1.37885 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47060 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.35902 * 116.99438 * 180.02562 * 11 10 9 13 13 C 1.38805 * 120.02753 * 359.97438 * 12 11 10 14 14 C 1.38159 * 120.08980 * 179.70395 * 13 12 11 15 15 C 1.38171 * 120.12269 * 0.29743 * 14 13 12 16 16 C 1.38886 * 120.03863 * 359.95636 * 15 14 13 17 17 N 1.39921 * 120.03811 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00274 * 33.33301 * 17 16 15 19 19 O 1.21284 * 120.00193 * 5.27418 * 18 17 16 20 20 C 1.50705 * 120.00054 * 185.27694 * 18 17 16 21 21 H 1.08996 * 109.70290 * 304.99830 * 20 18 17 22 22 C 1.53505 * 109.70639 * 65.57938 * 20 18 17 23 23 C 1.53254 * 108.15609 * 182.08639 * 22 20 18 24 24 C 1.50437 * 109.44140 * 313.17650 * 23 22 20 25 25 C 1.30682 * 122.49844 * 17.46317 * 24 23 22 26 26 O 1.35157 * 123.35936 * 359.65584 * 25 24 23 27 27 C 1.38589 * 120.01646 * 180.23189 * 12 11 10 28 28 H 0.97003 * 120.00183 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47499 * 60.00329 * 9 7 2 30 30 H 1.08995 * 109.47726 * 299.99496 * 9 7 2 31 31 H 1.08997 * 109.46971 * 59.99497 * 10 9 7 32 32 H 1.09007 * 109.46725 * 300.00224 * 10 9 7 33 33 H 1.08003 * 119.95326 * 359.97438 * 13 12 11 34 34 H 1.08000 * 119.94352 * 180.27388 * 14 13 12 35 35 H 1.08005 * 119.97837 * 179.97438 * 15 14 13 36 36 H 0.97001 * 119.99969 * 213.32959 * 17 16 15 37 37 H 1.09000 * 109.72615 * 301.75198 * 22 20 18 38 38 H 1.09001 * 109.72405 * 62.37828 * 22 20 18 39 39 H 1.09000 * 109.47276 * 73.17075 * 23 22 20 40 40 H 1.08997 * 109.47388 * 193.17859 * 23 22 20 41 41 H 1.07999 * 118.75354 * 197.47855 * 24 23 22 42 42 H 1.08002 * 118.33384 * 179.60935 * 25 24 23 43 43 H 1.08002 * 120.06023 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 8 1.5307 -4.8997 -0.0011 12 6 2.2709 -6.0394 -0.0007 13 6 3.6571 -5.9673 -0.0002 14 6 4.4109 -7.1251 0.0064 15 6 3.7877 -8.3583 0.0064 16 6 2.4010 -8.4365 0.0007 17 7 1.7699 -9.6853 0.0012 18 6 2.3335 -10.7250 0.6477 19 8 3.3367 -10.5566 1.3082 20 6 1.7173 -12.0968 0.5498 21 1 0.6714 -12.0523 0.8535 22 6 1.8156 -12.6066 -0.8948 23 6 1.1337 -13.9772 -0.9650 24 6 1.6036 -14.8296 0.1821 25 6 2.1866 -14.3265 1.2379 26 8 2.4270 -13.0059 1.3958 27 6 1.6422 -7.2745 -0.0061 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5572 0.8896 31 1 2.8719 -3.6044 0.8894 32 1 2.8719 -3.6044 -0.8906 33 1 4.1470 -5.0048 -0.0006 34 1 5.4893 -7.0663 0.0113 35 1 4.3792 -9.2620 0.0112 36 1 0.9268 -9.8028 -0.4637 37 1 1.3122 -11.9104 -1.5656 38 1 2.8631 -12.7010 -1.1810 39 1 0.0530 -13.8490 -0.9037 40 1 1.3892 -14.4624 -1.9070 41 1 1.4536 -15.8979 0.1310 42 1 2.4914 -15.0003 2.0251 43 1 0.5637 -7.3325 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777849694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:02 Heat of formation + Delta-G solvation = -94.332290 kcal Electronic energy + Delta-G solvation = -24956.450426 eV Core-core repulsion = 21159.607056 eV Total energy + Delta-G solvation = -3796.843370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09837 -41.09894 -40.18703 -38.34775 -35.94093 -35.41657 -34.86390 -32.92648 -32.60646 -31.07113 -30.13781 -27.39509 -26.93063 -24.77942 -24.15774 -23.82963 -22.63168 -21.56520 -20.06936 -19.53437 -19.05914 -18.32177 -17.57255 -17.44986 -17.00193 -16.97116 -16.83944 -16.54612 -16.41715 -15.92264 -15.54862 -15.03025 -14.72553 -14.51024 -14.41619 -14.32717 -14.28832 -13.91860 -13.72177 -13.29331 -13.27624 -12.92809 -12.67826 -12.56852 -12.42709 -12.12625 -11.92200 -11.76434 -11.63573 -11.58381 -11.40635 -11.29726 -10.88180 -10.60157 -9.52231 -9.39046 -9.04952 -8.25567 -6.38866 0.14190 0.43784 1.26321 1.40644 1.41640 1.44786 1.45529 1.53512 2.26656 2.48524 2.71416 2.76803 3.08931 3.33343 3.51490 3.84939 3.85913 4.01041 4.13670 4.15250 4.17261 4.22940 4.29453 4.39964 4.40765 4.50539 4.64384 4.67208 4.72968 4.76909 4.95231 5.09711 5.16695 5.17995 5.30877 5.33192 5.37765 5.47987 5.49074 5.58962 5.68265 5.83788 6.08494 6.22001 6.51346 6.56499 6.75644 6.91526 7.31024 8.87116 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.001906 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.406702 B =14688.135372 C =15035.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.335 6.335 12 C 0.133 3.867 13 C -0.230 4.230 14 C -0.058 4.058 15 C -0.172 4.172 16 C 0.182 3.818 17 N -0.650 5.650 18 C 0.520 3.480 19 O -0.541 6.541 20 C 0.078 3.922 21 H 0.127 0.873 22 C -0.147 4.147 23 C -0.083 4.083 24 C -0.275 4.275 25 C 0.031 3.969 26 O -0.330 6.330 27 C -0.186 4.186 28 H 0.267 0.733 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.130 0.870 36 H 0.431 0.569 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.140 0.860 42 H 0.177 0.823 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -30.548 -3.239 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.009 3.991 11 O -0.249 6.249 12 C 0.086 3.914 13 C -0.249 4.249 14 C -0.077 4.077 15 C -0.193 4.193 16 C 0.088 3.912 17 N -0.298 5.298 18 C 0.307 3.693 19 O -0.416 6.416 20 C 0.018 3.982 21 H 0.144 0.856 22 C -0.185 4.185 23 C -0.119 4.119 24 C -0.294 4.294 25 C -0.031 4.031 26 O -0.244 6.244 27 C -0.207 4.207 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.158 0.842 42 H 0.194 0.806 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.181 -30.281 -2.634 30.561 hybrid contribution -0.191 0.983 -0.129 1.010 sum 2.989 -29.298 -2.764 29.580 Atomic orbital electron populations 1.70105 1.07971 1.28244 1.50560 1.26017 0.95823 1.03596 0.94205 0.85361 0.78132 0.77339 0.79375 1.18829 1.20810 1.19005 1.21379 0.93854 0.91064 1.52191 0.91123 1.18967 0.94563 0.91252 0.96143 1.22911 0.95460 0.80015 1.00738 1.86079 1.37219 1.13579 1.87982 1.19107 0.90684 0.86648 0.94921 1.21498 0.92653 1.00768 1.09995 1.21045 1.00928 0.90502 0.95181 1.21071 0.93126 0.98732 1.06352 1.17244 0.91527 0.84102 0.98348 1.43157 1.26613 1.06764 1.53285 1.20765 0.84170 0.86384 0.77959 1.90758 1.26286 1.84842 1.39725 1.22295 0.96902 0.85421 0.93562 0.85569 1.22277 1.03179 0.99806 0.93218 1.20463 1.00942 0.92494 0.98029 1.22852 1.08240 1.02153 0.96199 1.22474 0.99105 0.82255 0.99236 1.85974 1.64286 1.15744 1.58401 1.20109 1.00946 0.88336 1.11288 0.92467 0.98043 0.98296 0.92180 0.91811 0.84798 0.83097 0.85185 0.72909 0.86985 0.91358 0.88914 0.88734 0.84228 0.80645 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.08 3.57 4.68 71.98 0.34 3.91 16 11 O -0.33 -13.75 10.13 -92.45 -0.94 -14.68 16 12 C 0.13 4.55 6.68 22.49 0.15 4.70 16 13 C -0.23 -7.09 9.03 22.39 0.20 -6.89 16 14 C -0.06 -1.55 10.03 22.23 0.22 -1.32 16 15 C -0.17 -4.68 8.65 22.41 0.19 -4.49 16 16 C 0.18 4.63 6.28 38.14 0.24 4.87 16 17 N -0.65 -11.64 5.32 -303.55 -1.61 -13.26 16 18 C 0.52 11.03 6.93 87.66 0.61 11.64 16 19 O -0.54 -16.80 14.20 15.82 0.22 -16.57 16 20 C 0.08 1.13 3.27 30.02 0.10 1.23 16 21 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 22 C -0.15 -1.40 5.51 30.85 0.17 -1.23 16 23 C -0.08 -0.58 6.23 29.85 0.19 -0.39 16 24 C -0.28 -2.63 9.97 25.89 0.26 -2.37 16 25 C 0.03 0.41 10.88 68.11 0.74 1.15 16 26 O -0.33 -6.56 9.60 -65.49 -0.63 -7.19 16 27 C -0.19 -5.29 9.90 22.49 0.22 -5.07 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 32 H 0.06 2.55 7.66 -2.38 -0.02 2.54 16 33 H 0.13 4.01 6.29 -2.91 -0.02 3.99 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.13 3.58 6.41 -2.91 -0.02 3.56 16 36 H 0.43 4.13 8.82 -92.71 -0.82 3.31 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -75.13 363.47 4.05 -71.08 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.21 Total: 13.57 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.48 Total: -22.40 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.33 Total: -69.10 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.34 Total: -38.44 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -75.13 4.05 -71.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777849694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.252 kcal (2) G-P(sol) polarization free energy of solvation -75.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds