Wall clock time and date at job start Tue Mar 31 2020 11:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86796 * 120.00371 * 2 1 4 4 H 1.48493 * 109.47415 * 239.99712 * 3 2 1 5 5 H 1.48506 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47560 * 119.99493 * 3 2 1 7 7 C 1.38658 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99827 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00299 * 185.05738 * 9 7 2 11 11 C 1.38905 * 120.06934 * 354.46870 * 10 9 7 12 12 C 1.38069 * 119.93064 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.07302 * 359.97438 * 12 11 10 14 14 C 1.38282 * 120.13780 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.96524 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47116 * 89.99913 * 15 14 13 17 17 O 1.21278 * 119.99789 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99840 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99635 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46897 * 180.02562 * 19 18 16 21 21 H 1.09007 * 109.70689 * 304.41931 * 20 19 18 22 22 C 1.53527 * 109.71160 * 183.79713 * 20 19 18 23 23 C 1.53249 * 108.14311 * 177.90316 * 22 20 19 24 24 C 1.50441 * 109.44700 * 46.82947 * 23 22 20 25 25 C 1.30680 * 122.49590 * 342.52285 * 24 23 22 26 26 O 1.35135 * 123.34454 * 0.40705 * 25 24 23 27 27 C 1.38122 * 120.06607 * 0.26751 * 14 13 12 28 28 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03337 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.96655 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.93683 * 179.97438 * 13 12 11 32 32 H 1.08996 * 109.46891 * 329.99789 * 15 14 13 33 33 H 1.09004 * 109.46607 * 209.99432 * 15 14 13 34 34 H 0.97000 * 120.00254 * 0.02562 * 18 16 15 35 35 H 1.08996 * 109.47195 * 60.00802 * 19 18 16 36 36 H 1.08994 * 109.47395 * 299.99875 * 19 18 16 37 37 H 1.08997 * 109.73139 * 58.23990 * 22 20 19 38 38 H 1.09000 * 109.73968 * 297.56486 * 22 20 19 39 39 H 1.09003 * 109.47487 * 286.84377 * 23 22 20 40 40 H 1.09001 * 109.47906 * 166.83218 * 23 22 20 41 41 H 1.08001 * 118.75376 * 162.49582 * 24 23 22 42 42 H 1.08004 * 118.33118 * 180.42901 * 25 24 23 43 43 H 1.07998 * 120.03452 * 179.70566 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4573 -3.4395 0.0954 12 6 4.2023 -4.5968 0.2051 13 6 3.5684 -5.8201 0.3277 14 6 2.1873 -5.8883 0.3403 15 6 1.5008 -7.2231 0.4747 16 6 1.2780 -7.5288 1.9335 17 8 1.6414 -6.7406 2.7806 18 7 0.6749 -8.6781 2.2967 19 6 0.4589 -8.9755 3.7149 20 6 -0.2382 -10.3306 3.8513 21 1 -1.1620 -10.3287 3.2725 22 6 -0.5527 -10.6047 5.3288 23 6 -1.2953 -11.9423 5.4184 24 6 -0.5799 -12.9693 4.5838 25 6 0.2868 -12.6443 3.6613 26 8 0.6257 -11.3674 3.3774 27 6 1.4365 -4.7348 0.2249 28 1 -0.4850 0.8400 -0.0004 29 1 3.9528 -2.4847 0.0000 30 1 5.2811 -4.5469 0.1960 31 1 4.1533 -6.7241 0.4130 32 1 2.1253 -7.9990 0.0321 33 1 0.5407 -7.1913 -0.0406 34 1 0.3846 -9.3086 1.6192 35 1 -0.1651 -8.1993 4.1579 36 1 1.4190 -9.0078 4.2297 37 1 -1.1814 -9.8075 5.7253 38 1 0.3750 -10.6602 5.8984 39 1 -2.3131 -11.8183 5.0484 40 1 -1.3239 -12.2733 6.4566 41 1 -0.7903 -14.0149 4.7537 42 1 0.7559 -13.4367 3.0968 43 1 0.3579 -4.7891 0.2300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781070936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:02 Heat of formation + Delta-G solvation = -67.589102 kcal Electronic energy + Delta-G solvation = -25049.943757 eV Core-core repulsion = 21254.260059 eV Total energy + Delta-G solvation = -3795.683698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64284 -39.61809 -38.67251 -36.45351 -35.06245 -34.33773 -32.45983 -32.16696 -31.63793 -29.17288 -28.13122 -26.57703 -25.17534 -24.27117 -23.04758 -21.60413 -21.12877 -20.19581 -19.29982 -17.74313 -17.41688 -16.93967 -16.66015 -16.51788 -16.01181 -15.36289 -14.91212 -14.82441 -14.49031 -14.32949 -14.31098 -13.65090 -13.60745 -13.45841 -13.34933 -13.28068 -12.81801 -12.65466 -12.45959 -12.30782 -11.74137 -11.45019 -11.35939 -11.20891 -11.15897 -10.95228 -10.77256 -10.70475 -10.54668 -10.40133 -9.69045 -9.26554 -9.11268 -8.81378 -8.76455 -7.98485 -7.13710 -6.37288 -3.96137 1.89878 2.17087 2.47479 2.82437 2.95463 3.17328 3.17878 3.21403 3.23345 4.02943 4.19155 4.31002 4.47769 4.61519 4.66136 4.79707 4.92689 4.98742 5.10307 5.15767 5.21339 5.26331 5.28412 5.39863 5.46923 5.54677 5.58543 5.70643 5.75909 5.83011 5.89141 6.01516 6.11642 6.25561 6.35840 6.41838 6.73899 6.99935 7.14667 7.18173 7.34949 7.44511 7.49530 7.52167 7.91153 8.07918 8.36849 9.08497 9.79909 10.81082 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.002157 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.567834 B =12975.250043 C =13622.555574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.032 4.032 15 C -0.093 4.093 16 C 0.514 3.486 17 O -0.519 6.519 18 N -0.736 5.736 19 C 0.129 3.871 20 C 0.078 3.922 21 H 0.080 0.920 22 C -0.154 4.154 23 C -0.081 4.081 24 C -0.285 4.285 25 C 0.056 3.944 26 O -0.318 6.318 27 C -0.175 4.175 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.402 0.598 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.157 0.843 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -24.676 6.152 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.033 4.033 15 C -0.133 4.133 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.391 5.391 19 C 0.005 3.995 20 C 0.022 3.978 21 H 0.097 0.903 22 C -0.192 4.192 23 C -0.118 4.118 24 C -0.304 4.304 25 C -0.007 4.007 26 O -0.232 6.232 27 C -0.194 4.194 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.174 0.826 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.278 -23.771 6.655 24.718 hybrid contribution 0.141 0.280 -0.074 0.322 sum -1.138 -23.491 6.581 24.422 Atomic orbital electron populations 1.70029 1.05920 1.27609 1.46514 1.25269 0.95839 0.98758 0.96713 0.85792 0.78676 0.79874 0.79136 1.19564 1.20347 1.19540 1.21265 0.91742 0.80885 1.52763 0.89199 1.83972 1.34217 1.11349 1.78859 1.19276 0.90264 0.87961 0.92401 1.21169 0.93839 0.98927 1.11065 1.20676 0.98362 0.92317 0.97985 1.20357 0.93325 0.97010 1.10828 1.18665 0.93233 0.91979 0.99426 1.20583 1.02631 0.97166 0.92914 1.20770 0.76926 0.80507 0.91743 1.90766 1.48742 1.46977 1.52818 1.45933 1.63193 1.22203 1.07725 1.21346 1.01540 0.93000 0.83650 1.22784 0.93083 0.86424 0.95516 0.90253 1.22218 1.02417 0.98783 0.95746 1.20337 0.98570 0.92868 1.00039 1.22532 1.05497 1.00751 1.01650 1.22024 0.97081 0.85332 0.96237 1.85975 1.49930 1.13232 1.74055 1.19939 0.99046 0.89949 1.10494 0.92094 0.85647 0.87497 0.87930 0.88332 0.88256 0.76439 0.89467 0.90548 0.89602 0.90180 0.91086 0.90440 0.86227 0.82622 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.67 55.48 0.76 -25.27 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -11.29 9.49 30.89 0.29 -10.99 16 8 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 9 O -0.18 -5.34 9.76 0.06 0.00 -5.34 16 10 C 0.15 3.94 6.65 -39.10 -0.26 3.68 16 11 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.20 -3.66 9.70 -39.53 -0.38 -4.04 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.27 5.83 -29.03 -0.17 -1.44 16 16 C 0.51 7.64 7.82 -10.98 -0.09 7.56 16 17 O -0.52 -10.36 16.03 5.56 0.09 -10.27 16 18 N -0.74 -7.91 5.51 -60.30 -0.33 -8.24 16 19 C 0.13 1.28 5.37 -4.04 -0.02 1.26 16 20 C 0.08 0.61 2.89 -26.46 -0.08 0.53 16 21 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 22 C -0.15 -1.03 5.55 -26.33 -0.15 -1.18 16 23 C -0.08 -0.50 6.23 -27.88 -0.17 -0.67 16 24 C -0.28 -1.87 9.97 -36.06 -0.36 -2.23 16 25 C 0.06 0.40 10.88 29.10 0.32 0.71 16 26 O -0.32 -2.79 10.00 -17.11 -0.17 -2.96 16 27 C -0.17 -3.92 9.64 -39.39 -0.38 -4.30 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 30 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 32 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.40 3.20 8.47 -40.82 -0.35 2.86 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -35.64 366.00 -7.88 -43.52 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.96 Total: 5.71 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -2.76 Total: -18.77 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.43 Total: -33.51 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.08 Total: -18.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.64 -7.88 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781070936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.070 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds