Wall clock time and date at job start Tue Mar 31 2020 11:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86796 * 120.00371 * 2 1 4 4 H 1.48493 * 109.47415 * 239.99712 * 3 2 1 5 5 H 1.48506 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47560 * 119.99493 * 3 2 1 7 7 C 1.38658 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99827 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00299 * 185.05738 * 9 7 2 11 11 C 1.38905 * 120.06934 * 354.46870 * 10 9 7 12 12 C 1.38069 * 119.93064 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.07302 * 359.97438 * 12 11 10 14 14 C 1.38282 * 120.13780 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.96524 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47116 * 89.99913 * 15 14 13 17 17 O 1.21278 * 119.99789 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99840 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99635 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46897 * 180.02562 * 19 18 16 21 21 H 1.09007 * 109.70689 * 304.41931 * 20 19 18 22 22 C 1.53527 * 109.71160 * 183.79713 * 20 19 18 23 23 C 1.53249 * 108.14311 * 177.90316 * 22 20 19 24 24 C 1.50441 * 109.44700 * 46.82947 * 23 22 20 25 25 C 1.30680 * 122.49590 * 342.52285 * 24 23 22 26 26 O 1.35135 * 123.34454 * 0.40705 * 25 24 23 27 27 C 1.38122 * 120.06607 * 0.26751 * 14 13 12 28 28 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03337 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.96655 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.93683 * 179.97438 * 13 12 11 32 32 H 1.08996 * 109.46891 * 329.99789 * 15 14 13 33 33 H 1.09004 * 109.46607 * 209.99432 * 15 14 13 34 34 H 0.97000 * 120.00254 * 0.02562 * 18 16 15 35 35 H 1.08996 * 109.47195 * 60.00802 * 19 18 16 36 36 H 1.08994 * 109.47395 * 299.99875 * 19 18 16 37 37 H 1.08997 * 109.73139 * 58.23990 * 22 20 19 38 38 H 1.09000 * 109.73968 * 297.56486 * 22 20 19 39 39 H 1.09003 * 109.47487 * 286.84377 * 23 22 20 40 40 H 1.09001 * 109.47906 * 166.83218 * 23 22 20 41 41 H 1.08001 * 118.75376 * 162.49582 * 24 23 22 42 42 H 1.08004 * 118.33118 * 180.42901 * 25 24 23 43 43 H 1.07998 * 120.03452 * 179.70566 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4573 -3.4395 0.0954 12 6 4.2023 -4.5968 0.2051 13 6 3.5684 -5.8201 0.3277 14 6 2.1873 -5.8883 0.3403 15 6 1.5008 -7.2231 0.4747 16 6 1.2780 -7.5288 1.9335 17 8 1.6414 -6.7406 2.7806 18 7 0.6749 -8.6781 2.2967 19 6 0.4589 -8.9755 3.7149 20 6 -0.2382 -10.3306 3.8513 21 1 -1.1620 -10.3287 3.2725 22 6 -0.5527 -10.6047 5.3288 23 6 -1.2953 -11.9423 5.4184 24 6 -0.5799 -12.9693 4.5838 25 6 0.2868 -12.6443 3.6613 26 8 0.6257 -11.3674 3.3774 27 6 1.4365 -4.7348 0.2249 28 1 -0.4850 0.8400 -0.0004 29 1 3.9528 -2.4847 0.0000 30 1 5.2811 -4.5469 0.1960 31 1 4.1533 -6.7241 0.4130 32 1 2.1253 -7.9990 0.0321 33 1 0.5407 -7.1913 -0.0406 34 1 0.3846 -9.3086 1.6192 35 1 -0.1651 -8.1993 4.1579 36 1 1.4190 -9.0078 4.2297 37 1 -1.1814 -9.8075 5.7253 38 1 0.3750 -10.6602 5.8984 39 1 -2.3131 -11.8183 5.0484 40 1 -1.3239 -12.2733 6.4566 41 1 -0.7903 -14.0149 4.7537 42 1 0.7559 -13.4367 3.0968 43 1 0.3579 -4.7891 0.2300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781070936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:01 Heat of formation + Delta-G solvation = -92.035136 kcal Electronic energy + Delta-G solvation = -25051.003816 eV Core-core repulsion = 21254.260059 eV Total energy + Delta-G solvation = -3796.743758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36321 -40.92038 -40.24413 -38.20206 -36.05921 -34.87488 -34.33780 -33.58529 -32.60039 -30.88214 -29.20296 -27.74624 -27.13387 -24.89091 -23.79320 -23.24551 -22.67000 -21.45665 -19.91118 -19.50282 -18.82780 -18.23567 -17.51882 -17.32885 -16.92648 -16.75271 -16.46775 -16.11590 -15.92531 -15.60268 -15.43880 -14.99465 -14.92755 -14.56067 -14.43296 -14.18659 -13.99199 -13.86486 -13.61470 -13.52998 -13.23790 -12.95574 -12.74019 -12.48320 -12.36782 -12.20538 -12.12140 -11.85604 -11.75238 -11.51567 -11.20499 -10.93043 -10.77676 -10.13031 -9.62572 -9.32590 -8.96661 -8.46302 -6.14714 0.53229 0.76886 1.33923 1.40863 1.45511 1.50654 1.68276 2.16085 2.20047 2.40640 2.85999 3.18142 3.46143 3.58242 3.73957 3.83040 3.92072 4.09096 4.12052 4.15358 4.28239 4.33214 4.43115 4.44505 4.51926 4.59443 4.66526 4.68424 4.75227 4.77815 4.84293 5.00190 5.08147 5.13632 5.15840 5.32075 5.38341 5.41878 5.65461 5.66181 5.73909 5.76793 6.03490 6.24550 6.56667 6.64318 6.98108 7.29995 7.79833 8.77094 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.002157 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.567834 B =12975.250043 C =13622.555574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.182 4.182 14 C -0.026 4.026 15 C -0.091 4.091 16 C 0.514 3.486 17 O -0.580 6.580 18 N -0.715 5.715 19 C 0.128 3.872 20 C 0.085 3.915 21 H 0.092 0.908 22 C -0.154 4.154 23 C -0.084 4.084 24 C -0.287 4.287 25 C 0.040 3.960 26 O -0.334 6.334 27 C -0.193 4.193 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.418 0.582 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.133 0.867 42 H 0.176 0.824 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -27.525 6.034 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.200 4.200 14 C -0.026 4.026 15 C -0.130 4.130 16 C 0.302 3.698 17 O -0.459 6.459 18 N -0.369 5.369 19 C 0.004 3.996 20 C 0.029 3.971 21 H 0.110 0.890 22 C -0.192 4.192 23 C -0.121 4.121 24 C -0.306 4.306 25 C -0.022 4.022 26 O -0.248 6.248 27 C -0.212 4.212 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.151 0.849 42 H 0.193 0.807 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.125 -26.731 6.519 27.515 hybrid contribution -0.233 0.769 0.016 0.804 sum -0.107 -25.962 6.535 26.772 Atomic orbital electron populations 1.70180 1.08002 1.28810 1.49032 1.26620 0.96924 1.02766 0.95922 0.84637 0.77387 0.74196 0.79900 1.17934 1.19448 1.18433 1.21784 0.92488 0.81532 1.53265 0.88287 1.83930 1.35873 1.12518 1.81748 1.19888 0.91691 0.87952 0.94386 1.21295 0.93147 1.00189 1.11978 1.21131 1.00222 0.91487 0.96373 1.20981 0.93580 0.98161 1.07274 1.19200 0.93750 0.93115 0.96549 1.20699 1.04384 0.95208 0.92686 1.20937 0.76487 0.80732 0.91660 1.90758 1.51731 1.49059 1.54327 1.45756 1.61294 1.21131 1.08701 1.21375 1.00987 0.94431 0.82833 1.22689 0.92892 0.85129 0.96389 0.89028 1.22227 1.02325 0.99651 0.94979 1.20400 0.98770 0.92339 1.00595 1.22767 1.05066 1.01551 1.01218 1.22401 0.97752 0.84994 0.97005 1.85937 1.50499 1.13993 1.74414 1.20225 0.99340 0.90405 1.11228 0.91858 0.86430 0.83726 0.83613 0.83923 0.85834 0.74426 0.89944 0.92024 0.88739 0.91065 0.90362 0.89672 0.84939 0.80674 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.45 13.67 21.61 0.30 -58.15 16 2 C -0.03 -1.49 5.49 84.84 0.47 -1.03 16 3 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.41 -25.32 9.49 67.92 0.64 -24.67 16 8 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 9 O -0.23 -14.84 9.76 -22.70 -0.22 -15.06 16 10 C 0.11 5.93 6.65 22.58 0.15 6.08 16 11 C -0.25 -11.60 9.17 22.39 0.21 -11.40 16 12 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 13 C -0.18 -6.15 9.70 22.30 0.22 -5.93 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 15 C -0.09 -2.16 5.83 29.10 0.17 -1.99 16 16 C 0.51 14.24 7.82 87.66 0.69 14.93 16 17 O -0.58 -22.89 16.03 -3.02 -0.05 -22.94 16 18 N -0.72 -13.71 5.51 -463.07 -2.55 -16.26 16 19 C 0.13 2.40 5.37 86.38 0.46 2.86 16 20 C 0.09 1.17 2.89 30.77 0.09 1.25 16 21 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 22 C -0.15 -1.84 5.55 30.85 0.17 -1.67 16 23 C -0.08 -0.86 6.23 29.85 0.19 -0.68 16 24 C -0.29 -3.11 9.97 25.89 0.26 -2.85 16 25 C 0.04 0.48 10.88 68.11 0.74 1.22 16 26 O -0.33 -5.14 10.00 -84.12 -0.84 -5.98 16 27 C -0.19 -8.84 9.64 22.39 0.22 -8.62 16 28 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 30 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 31 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.14 2.20 8.08 -2.39 -0.02 2.19 16 33 H 0.12 2.41 8.08 -2.38 -0.02 2.39 16 34 H 0.42 5.27 8.47 -92.71 -0.79 4.48 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.13 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -84.26 366.00 3.70 -80.56 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.24 Total: 27.35 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.80 Total: -36.04 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -2.25 Total: -74.41 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.11 Total: -43.98 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -84.26 3.70 -80.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781070936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.478 kcal (2) G-P(sol) polarization free energy of solvation -84.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds