Wall clock time and date at job start Tue Mar 31 2020 11:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00045 * 2 1 4 4 H 1.48497 * 109.47191 * 269.99910 * 3 2 1 5 5 H 1.48502 * 109.47073 * 29.99984 * 3 2 1 6 6 H 1.48493 * 109.47181 * 149.99866 * 3 2 1 7 7 C 1.38660 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99838 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00133 * 185.05669 * 9 7 2 11 11 C 1.38901 * 120.06322 * 354.44716 * 10 9 7 12 12 C 1.38081 * 119.92942 * 180.02562 * 11 10 9 13 13 C 1.38326 * 120.06996 * 0.02562 * 12 11 10 14 14 C 1.38285 * 120.13569 * 359.67990 * 13 12 11 15 15 C 1.50697 * 119.96750 * 180.32426 * 14 13 12 16 16 C 1.50703 * 109.47002 * 270.27464 * 15 14 13 17 17 O 1.21277 * 119.99947 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99969 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99791 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.46694 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.70545 * 60.00602 * 20 19 18 22 22 C 1.53510 * 109.70653 * 180.58087 * 20 19 18 23 23 C 1.53251 * 108.15950 * 182.09047 * 22 20 19 24 24 C 1.50439 * 109.44053 * 313.17709 * 23 22 20 25 25 C 1.30693 * 122.49712 * 17.50372 * 24 23 22 26 26 O 1.35153 * 123.35762 * 359.56978 * 25 24 23 27 27 C 1.38120 * 120.06956 * 0.59717 * 14 13 12 28 28 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03778 * 0.04163 * 11 10 9 30 30 H 1.07995 * 119.96751 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.93452 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47173 * 30.27261 * 15 14 13 33 33 H 1.08998 * 109.47537 * 150.27259 * 15 14 13 34 34 H 0.97000 * 119.99658 * 359.97438 * 18 16 15 35 35 H 1.08999 * 109.47118 * 299.99800 * 19 18 16 36 36 H 1.08998 * 109.47193 * 59.99554 * 19 18 16 37 37 H 1.09002 * 109.72167 * 301.75706 * 22 20 19 38 38 H 1.08995 * 109.72025 * 62.37469 * 22 20 19 39 39 H 1.09003 * 109.47387 * 73.16689 * 23 22 20 40 40 H 1.09003 * 109.47667 * 193.18566 * 23 22 20 41 41 H 1.08000 * 118.75588 * 197.48142 * 24 23 22 42 42 H 1.07996 * 118.32766 * 179.56965 * 25 24 23 43 43 H 1.07999 * 120.03775 * 179.70167 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5470 1.4402 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0699 -3.5046 0.1087 11 6 3.4573 -3.4394 0.0947 12 6 4.2024 -4.5969 0.2033 13 6 3.5687 -5.8203 0.3253 14 6 2.1876 -5.8878 0.3456 15 6 1.5011 -7.2220 0.4860 16 6 1.2645 -7.8114 -0.8806 17 8 1.6181 -7.2074 -1.8710 18 7 0.6591 -9.0095 -1.0021 19 6 0.4286 -9.5822 -2.3307 20 6 -0.2682 -10.9368 -2.1881 21 1 -1.2238 -10.8069 -1.6801 22 6 -0.4994 -11.5487 -3.5769 23 6 -1.2442 -12.8758 -3.3961 24 6 -0.5842 -13.6759 -2.3064 25 6 0.2299 -13.1393 -1.4361 26 8 0.5601 -11.8288 -1.4370 27 6 1.4366 -4.7342 0.2317 28 1 -0.4850 0.8401 0.0004 29 1 3.9527 -2.4846 -0.0006 30 1 5.2812 -4.5470 0.1921 31 1 4.1536 -6.7242 0.4097 32 1 2.1307 -7.8950 1.0680 33 1 0.5462 -7.0876 0.9941 34 1 0.3760 -9.4924 -0.2100 35 1 -0.2009 -8.9088 -2.9124 36 1 1.3834 -9.7168 -2.8390 37 1 -1.0994 -10.8697 -4.1828 38 1 0.4589 -11.7272 -4.0643 39 1 -2.2807 -12.6767 -3.1238 40 1 -1.2150 -13.4390 -4.3289 41 1 -0.7912 -14.7338 -2.2404 42 1 0.6608 -13.7756 -0.6773 43 1 0.3580 -4.7880 0.2427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781070937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:05 Heat of formation + Delta-G solvation = -67.714883 kcal Electronic energy + Delta-G solvation = -25039.809404 eV Core-core repulsion = 21244.120252 eV Total energy + Delta-G solvation = -3795.689152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64810 -39.61733 -38.67179 -36.45311 -35.05751 -34.34640 -32.46015 -32.16831 -31.63740 -29.17231 -28.13488 -26.58198 -25.17898 -24.27322 -23.05008 -21.60264 -21.12124 -20.17971 -19.32270 -17.74672 -17.42515 -16.94063 -16.65906 -16.52504 -15.99527 -15.36271 -14.91316 -14.83603 -14.50320 -14.33181 -14.30542 -13.65607 -13.63501 -13.41835 -13.35869 -13.30465 -12.81813 -12.65174 -12.44961 -12.31532 -11.74607 -11.44980 -11.35966 -11.21561 -11.16373 -10.96074 -10.76223 -10.71206 -10.54473 -10.39491 -9.69002 -9.26400 -9.11106 -8.81714 -8.77162 -7.98350 -7.13787 -6.37739 -3.96481 1.89457 2.17077 2.47483 2.82062 2.93716 3.16433 3.17890 3.22676 3.24244 4.02535 4.18878 4.30235 4.47354 4.61642 4.65826 4.79519 4.92129 4.98151 5.13977 5.17336 5.19701 5.21736 5.28468 5.40111 5.46228 5.54544 5.59013 5.69987 5.75717 5.83187 5.88560 6.01743 6.11258 6.25684 6.35886 6.41941 6.73941 6.99997 7.14861 7.17537 7.35099 7.44586 7.49882 7.52246 7.91209 8.07656 8.36695 9.08169 9.79908 10.80689 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.002116 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.763933 B =13227.424987 C =13796.419799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.033 4.033 15 C -0.093 4.093 16 C 0.514 3.486 17 O -0.520 6.520 18 N -0.736 5.736 19 C 0.129 3.871 20 C 0.078 3.922 21 H 0.080 0.920 22 C -0.154 4.154 23 C -0.081 4.081 24 C -0.285 4.285 25 C 0.056 3.944 26 O -0.318 6.318 27 C -0.175 4.175 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.402 0.598 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.157 0.843 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -25.544 -1.754 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.033 4.033 15 C -0.133 4.133 16 C 0.301 3.699 17 O -0.394 6.394 18 N -0.390 5.390 19 C 0.005 3.995 20 C 0.022 3.978 21 H 0.097 0.903 22 C -0.192 4.192 23 C -0.118 4.118 24 C -0.304 4.304 25 C -0.007 4.007 26 O -0.232 6.232 27 C -0.194 4.194 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.236 0.764 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.174 0.826 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.241 -24.757 -2.418 24.906 hybrid contribution 0.143 0.306 0.169 0.377 sum -1.098 -24.452 -2.249 24.579 Atomic orbital electron populations 1.70043 1.05919 1.27488 1.46615 1.25274 0.95840 0.98763 0.96739 0.85719 0.78892 0.80186 0.78663 1.19945 1.20326 1.19239 1.21312 0.91775 0.80884 1.52640 0.89146 1.83974 1.34207 1.11363 1.78876 1.19281 0.90254 0.87965 0.92413 1.21173 0.93836 0.98964 1.10991 1.20680 0.98364 0.92332 0.98001 1.20358 0.93334 0.96892 1.10874 1.18666 0.93231 0.91787 0.99645 1.20581 1.02614 0.95814 0.94292 1.20775 0.76904 0.80189 0.92062 1.90761 1.49150 1.59900 1.39587 1.45915 1.63114 1.21271 1.08682 1.21353 1.01400 0.90670 0.86080 1.22782 0.93817 0.88618 0.92607 0.90260 1.22215 1.02569 0.97866 0.96514 1.20335 0.98847 0.94644 0.97981 1.22534 1.06545 1.01158 1.00180 1.22029 0.97097 0.83801 0.97739 1.85971 1.52796 1.15933 1.68484 1.19943 0.99047 0.90005 1.10411 0.92150 0.85642 0.87497 0.87928 0.88329 0.88246 0.76370 0.89507 0.90621 0.89613 0.90192 0.91081 0.90442 0.86223 0.82609 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.67 55.48 0.76 -25.22 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.35 9.76 0.07 0.00 -5.35 16 10 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 11 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 12 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 13 C -0.20 -3.65 9.70 -39.53 -0.38 -4.03 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.27 5.83 -29.03 -0.17 -1.44 16 16 C 0.51 7.62 7.82 -10.98 -0.09 7.53 16 17 O -0.52 -10.31 16.03 5.56 0.09 -10.22 16 18 N -0.74 -7.89 5.46 -60.29 -0.33 -8.22 16 19 C 0.13 1.27 5.39 -4.04 -0.02 1.25 16 20 C 0.08 0.60 2.93 -26.47 -0.08 0.52 16 21 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 22 C -0.15 -1.02 5.55 -26.34 -0.15 -1.16 16 23 C -0.08 -0.49 6.23 -27.88 -0.17 -0.67 16 24 C -0.28 -1.86 9.97 -36.07 -0.36 -2.22 16 25 C 0.06 0.39 10.88 29.10 0.32 0.71 16 26 O -0.32 -2.75 9.83 -17.16 -0.17 -2.92 16 27 C -0.17 -3.91 9.65 -39.39 -0.38 -4.29 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 30 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.40 3.24 8.37 -40.82 -0.34 2.90 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.11 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -35.55 365.75 -7.88 -43.43 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.96 Total: 5.70 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.76 Total: -18.76 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.43 Total: -33.44 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.08 Total: -18.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.55 -7.88 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781070937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.289 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds