Wall clock time and date at job start Tue Mar 31 2020 11:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00045 * 2 1 4 4 H 1.48497 * 109.47191 * 269.99910 * 3 2 1 5 5 H 1.48502 * 109.47073 * 29.99984 * 3 2 1 6 6 H 1.48493 * 109.47181 * 149.99866 * 3 2 1 7 7 C 1.38660 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99838 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00133 * 185.05669 * 9 7 2 11 11 C 1.38901 * 120.06322 * 354.44716 * 10 9 7 12 12 C 1.38081 * 119.92942 * 180.02562 * 11 10 9 13 13 C 1.38326 * 120.06996 * 0.02562 * 12 11 10 14 14 C 1.38285 * 120.13569 * 359.67990 * 13 12 11 15 15 C 1.50697 * 119.96750 * 180.32426 * 14 13 12 16 16 C 1.50703 * 109.47002 * 270.27464 * 15 14 13 17 17 O 1.21277 * 119.99947 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99969 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99791 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.46694 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.70545 * 60.00602 * 20 19 18 22 22 C 1.53510 * 109.70653 * 180.58087 * 20 19 18 23 23 C 1.53251 * 108.15950 * 182.09047 * 22 20 19 24 24 C 1.50439 * 109.44053 * 313.17709 * 23 22 20 25 25 C 1.30693 * 122.49712 * 17.50372 * 24 23 22 26 26 O 1.35153 * 123.35762 * 359.56978 * 25 24 23 27 27 C 1.38120 * 120.06956 * 0.59717 * 14 13 12 28 28 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03778 * 0.04163 * 11 10 9 30 30 H 1.07995 * 119.96751 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.93452 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47173 * 30.27261 * 15 14 13 33 33 H 1.08998 * 109.47537 * 150.27259 * 15 14 13 34 34 H 0.97000 * 119.99658 * 359.97438 * 18 16 15 35 35 H 1.08999 * 109.47118 * 299.99800 * 19 18 16 36 36 H 1.08998 * 109.47193 * 59.99554 * 19 18 16 37 37 H 1.09002 * 109.72167 * 301.75706 * 22 20 19 38 38 H 1.08995 * 109.72025 * 62.37469 * 22 20 19 39 39 H 1.09003 * 109.47387 * 73.16689 * 23 22 20 40 40 H 1.09003 * 109.47667 * 193.18566 * 23 22 20 41 41 H 1.08000 * 118.75588 * 197.48142 * 24 23 22 42 42 H 1.07996 * 118.32766 * 179.56965 * 25 24 23 43 43 H 1.07999 * 120.03775 * 179.70167 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5470 1.4402 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0699 -3.5046 0.1087 11 6 3.4573 -3.4394 0.0947 12 6 4.2024 -4.5969 0.2033 13 6 3.5687 -5.8203 0.3253 14 6 2.1876 -5.8878 0.3456 15 6 1.5011 -7.2220 0.4860 16 6 1.2645 -7.8114 -0.8806 17 8 1.6181 -7.2074 -1.8710 18 7 0.6591 -9.0095 -1.0021 19 6 0.4286 -9.5822 -2.3307 20 6 -0.2682 -10.9368 -2.1881 21 1 -1.2238 -10.8069 -1.6801 22 6 -0.4994 -11.5487 -3.5769 23 6 -1.2442 -12.8758 -3.3961 24 6 -0.5842 -13.6759 -2.3064 25 6 0.2299 -13.1393 -1.4361 26 8 0.5601 -11.8288 -1.4370 27 6 1.4366 -4.7342 0.2317 28 1 -0.4850 0.8401 0.0004 29 1 3.9527 -2.4846 -0.0006 30 1 5.2812 -4.5470 0.1921 31 1 4.1536 -6.7242 0.4097 32 1 2.1307 -7.8950 1.0680 33 1 0.5462 -7.0876 0.9941 34 1 0.3760 -9.4924 -0.2100 35 1 -0.2009 -8.9088 -2.9124 36 1 1.3834 -9.7168 -2.8390 37 1 -1.0994 -10.8697 -4.1828 38 1 0.4589 -11.7272 -4.0643 39 1 -2.2807 -12.6767 -3.1238 40 1 -1.2150 -13.4390 -4.3289 41 1 -0.7912 -14.7338 -2.2404 42 1 0.6608 -13.7756 -0.6773 43 1 0.3580 -4.7880 0.2427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781070937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:04 Heat of formation + Delta-G solvation = -91.999248 kcal Electronic energy + Delta-G solvation = -25040.862453 eV Core-core repulsion = 21244.120252 eV Total energy + Delta-G solvation = -3796.742201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36319 -40.91879 -40.24041 -38.20136 -36.04784 -34.87675 -34.33629 -33.58357 -32.59719 -30.88191 -29.20108 -27.74948 -27.13573 -24.88872 -23.78985 -23.24518 -22.66460 -21.43845 -19.91962 -19.50402 -18.82956 -18.24359 -17.51752 -17.33113 -16.91348 -16.74411 -16.45865 -16.11296 -15.92855 -15.60937 -15.42047 -14.98974 -14.94414 -14.56109 -14.43710 -14.20717 -13.99594 -13.86335 -13.60948 -13.52121 -13.22346 -12.96425 -12.73787 -12.46049 -12.38533 -12.21083 -12.09738 -11.85093 -11.75239 -11.51710 -11.19542 -10.93059 -10.78572 -10.12365 -9.62531 -9.32377 -8.96761 -8.46339 -6.14707 0.53155 0.76882 1.34308 1.40932 1.44191 1.52377 1.68373 2.16532 2.18890 2.42091 2.86038 3.19010 3.45370 3.58698 3.73572 3.82774 3.92291 4.09429 4.12085 4.15460 4.28420 4.33222 4.42966 4.44914 4.52732 4.59533 4.66676 4.68542 4.75193 4.77942 4.84212 5.00223 5.08201 5.14001 5.16108 5.32055 5.37958 5.42624 5.65595 5.66243 5.73905 5.76793 6.03687 6.24541 6.57014 6.64246 6.98160 7.30129 7.80020 8.77249 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.002116 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.763933 B =13227.424987 C =13796.419799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.246 4.246 12 C -0.074 4.074 13 C -0.181 4.181 14 C -0.026 4.026 15 C -0.091 4.091 16 C 0.515 3.485 17 O -0.580 6.580 18 N -0.715 5.715 19 C 0.128 3.872 20 C 0.085 3.915 21 H 0.091 0.909 22 C -0.154 4.154 23 C -0.084 4.084 24 C -0.287 4.287 25 C 0.041 3.959 26 O -0.333 6.333 27 C -0.193 4.193 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.419 0.581 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.133 0.867 42 H 0.177 0.823 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 -28.282 -0.966 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.199 4.199 14 C -0.026 4.026 15 C -0.130 4.130 16 C 0.302 3.698 17 O -0.459 6.459 18 N -0.368 5.368 19 C 0.004 3.996 20 C 0.029 3.971 21 H 0.109 0.891 22 C -0.192 4.192 23 C -0.121 4.121 24 C -0.306 4.306 25 C -0.021 4.021 26 O -0.248 6.248 27 C -0.212 4.212 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.193 0.807 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.190 -27.600 -1.600 27.647 hybrid contribution -0.242 0.759 -0.078 0.800 sum -0.052 -26.841 -1.678 26.894 Atomic orbital electron populations 1.70191 1.08010 1.28740 1.49098 1.26624 0.96923 1.02763 0.95937 0.84566 0.77820 0.74463 0.79201 1.18950 1.19358 1.17608 1.21822 0.92498 0.81512 1.53157 0.88264 1.83933 1.35876 1.12547 1.81751 1.19887 0.91675 0.87949 0.94392 1.21294 0.93141 1.00218 1.11918 1.21133 1.00222 0.91493 0.96378 1.20979 0.93585 0.98014 1.07371 1.19199 0.93747 0.92900 0.96781 1.20696 1.04323 0.93545 0.94435 1.20925 0.76499 0.80743 0.91623 1.90754 1.52086 1.61662 1.41350 1.45742 1.61223 1.19977 1.09899 1.21390 1.00904 0.91935 0.85380 1.22687 0.93643 0.87399 0.93400 0.89116 1.22223 1.02455 0.98500 0.95985 1.20397 0.99061 0.94255 0.98385 1.22769 1.06084 1.01902 0.99864 1.22406 0.97737 0.83290 0.98701 1.85932 1.53343 1.16784 1.68725 1.20226 0.99329 0.90464 1.11173 0.91863 0.86443 0.83726 0.83625 0.83965 0.85896 0.74425 0.89943 0.92007 0.88722 0.91061 0.90381 0.89669 0.84956 0.80661 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.32 13.67 21.61 0.30 -58.02 16 2 C -0.03 -1.50 5.49 84.84 0.47 -1.03 16 3 Si 1.02 44.38 29.55 68.60 2.03 46.40 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.41 -25.21 9.49 67.92 0.64 -24.57 16 8 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 9 O -0.23 -14.86 9.76 -22.68 -0.22 -15.08 16 10 C 0.11 5.93 6.65 22.58 0.15 6.08 16 11 C -0.25 -11.59 9.17 22.39 0.21 -11.38 16 12 C -0.07 -2.78 10.04 22.25 0.22 -2.56 16 13 C -0.18 -6.14 9.70 22.30 0.22 -5.92 16 14 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 15 C -0.09 -2.17 5.83 29.10 0.17 -2.00 16 16 C 0.51 14.21 7.82 87.66 0.69 14.90 16 17 O -0.58 -22.71 16.03 -3.02 -0.05 -22.76 16 18 N -0.71 -13.71 5.46 -463.06 -2.53 -16.24 16 19 C 0.13 2.37 5.39 86.38 0.47 2.84 16 20 C 0.09 1.15 2.93 30.76 0.09 1.24 16 21 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 22 C -0.15 -1.81 5.55 30.85 0.17 -1.64 16 23 C -0.08 -0.85 6.23 29.85 0.19 -0.67 16 24 C -0.29 -3.08 9.97 25.88 0.26 -2.82 16 25 C 0.04 0.48 10.88 68.10 0.74 1.22 16 26 O -0.33 -5.05 9.83 -84.31 -0.83 -5.88 16 27 C -0.19 -8.84 9.65 22.39 0.22 -8.63 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 30 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.14 2.23 8.09 -2.39 -0.02 2.21 16 33 H 0.12 2.43 8.08 -2.39 -0.02 2.41 16 34 H 0.42 5.37 8.37 -92.71 -0.78 4.60 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 43 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -83.91 365.75 3.75 -80.16 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.25 Total: 27.36 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 4.80 Total: -35.95 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.23 Total: -74.26 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.10 Total: -43.72 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -83.91 3.75 -80.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781070937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.836 kcal (2) G-P(sol) polarization free energy of solvation -83.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds