Wall clock time and date at job start Tue Mar 31 2020 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46612 * 299.99513 * 3 2 1 6 6 H 1.48500 * 109.47344 * 59.99480 * 3 2 1 7 7 C 1.37873 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52319 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.27820 * 182.37262 * 10 9 7 12 12 N 1.46844 * 109.52270 * 59.18322 * 11 10 9 13 13 C 1.46906 * 111.00112 * 174.15769 * 12 11 10 14 14 N 1.46500 * 109.46919 * 169.99428 * 13 12 11 15 15 C 1.35026 * 125.92441 * 94.71893 * 14 13 12 16 16 C 1.35106 * 107.97153 * 179.89349 * 15 14 13 17 17 C 1.40834 * 107.84323 * 0.36581 * 16 15 14 18 18 C 1.48467 * 126.03443 * 179.79218 * 17 16 15 19 19 C 1.39331 * 122.75557 * 184.73224 * 18 17 16 20 20 C 1.33092 * 114.90928 * 179.83644 * 19 18 17 21 21 S 1.75821 * 109.90950 * 0.41142 * 20 19 18 22 22 C 1.34510 * 122.75659 * 5.02779 * 18 17 16 23 23 N 1.31592 * 107.92944 * 359.77341 * 17 16 15 24 24 C 1.46851 * 111.19575 * 298.25434 * 12 11 10 25 25 C 1.53032 * 109.52182 * 61.74475 * 24 12 11 26 26 H 0.96998 * 119.99654 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.52066 * 300.11812 * 9 7 2 28 28 H 1.09006 * 109.50478 * 62.43517 * 10 9 7 29 29 H 1.09000 * 109.53517 * 302.33789 * 10 9 7 30 30 H 1.09004 * 109.46685 * 299.16314 * 11 10 9 31 31 H 1.09010 * 109.45302 * 179.19085 * 11 10 9 32 32 H 1.08992 * 109.47459 * 289.99654 * 13 12 11 33 33 H 1.09004 * 109.47040 * 49.99804 * 13 12 11 34 34 H 1.07995 * 126.01344 * 0.02562 * 15 14 13 35 35 H 1.08001 * 126.08029 * 180.14023 * 16 15 14 36 36 H 1.07993 * 122.55077 * 0.03761 * 19 18 17 37 37 H 1.07992 * 125.04333 * 180.18646 * 20 19 18 38 38 H 1.08002 * 125.22996 * 359.94317 * 22 18 17 39 39 H 1.09005 * 109.46004 * 181.75655 * 24 12 11 40 40 H 1.08992 * 109.46301 * 301.72635 * 24 12 11 41 41 H 1.09001 * 109.50447 * 180.88041 * 25 24 12 42 42 H 1.08994 * 109.53706 * 60.78047 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 -0.0593 12 7 0.6532 -5.0195 -1.2757 13 6 0.0068 -6.3288 -1.4375 14 7 -0.9828 -6.2549 -2.5152 15 6 -0.7743 -6.5897 -3.8066 16 6 -1.9264 -6.3844 -4.4817 17 6 -2.8805 -5.8952 -3.5685 18 6 -4.2846 -5.5304 -3.8839 19 6 -5.1445 -4.9618 -2.9466 20 6 -6.3676 -4.6941 -3.3978 21 16 -6.5021 -5.1738 -5.0839 22 6 -4.8329 -5.7269 -5.0964 23 7 -2.3077 -5.8191 -2.3862 24 6 -0.3406 -3.9384 -1.2759 25 6 0.3751 -2.5859 -1.2524 26 1 -0.4849 0.8401 -0.0004 27 1 0.6221 -2.5566 0.8889 28 1 2.8428 -3.6321 0.9114 29 1 2.8995 -3.5845 -0.8674 30 1 0.8314 -5.0705 0.8164 31 1 2.1804 -5.8160 -0.0739 32 1 0.7591 -7.0773 -1.6858 33 1 -0.4890 -6.6066 -0.5074 34 1 0.1501 -6.9589 -4.2255 35 1 -2.0863 -6.5603 -5.5352 36 1 -4.8407 -4.7512 -1.9319 37 1 -7.1609 -4.2515 -2.8138 38 1 -4.3257 -6.1578 -5.9470 39 1 -0.9540 -4.0091 -2.1742 40 1 -0.9756 -4.0286 -0.3947 41 1 -0.3628 -1.7839 -1.2368 42 1 0.9996 -2.4885 -2.1404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781572002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:10 Heat of formation + Delta-G solvation = 121.934459 kcal Electronic energy + Delta-G solvation = -23794.737647 eV Core-core repulsion = 20482.317929 eV Total energy + Delta-G solvation = -3312.419718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16386 -38.32771 -37.64863 -34.30626 -32.36474 -30.81223 -30.16866 -29.77025 -29.22688 -26.43757 -24.74828 -23.74804 -22.21690 -21.70775 -20.90249 -20.53517 -18.73089 -18.50762 -17.62808 -16.83636 -16.42406 -15.90438 -15.25226 -14.55431 -14.50347 -14.08755 -13.91980 -13.52295 -13.28947 -13.09150 -13.02024 -12.88151 -12.43494 -12.34404 -12.32553 -12.16934 -11.93168 -11.42785 -10.99991 -10.97546 -10.81303 -10.54163 -10.46868 -10.25019 -10.02817 -9.84664 -9.45681 -9.00622 -8.85276 -8.76460 -8.59109 -8.29348 -8.18585 -7.86218 -5.96147 -4.02043 0.79052 1.52331 1.83150 1.86776 2.36483 2.59276 3.30980 3.39084 3.42720 3.45467 4.28942 4.45984 4.51917 4.67270 4.94560 5.05297 5.19791 5.28486 5.34122 5.40115 5.56327 5.62520 5.71606 5.78111 5.93069 5.95551 6.03151 6.19176 6.25566 6.28199 6.41685 6.57363 6.59443 6.70589 6.80786 6.91601 7.00642 7.14594 7.36057 7.53558 7.58947 7.79773 7.80905 8.03241 8.15954 8.47971 9.01793 9.62556 11.09997 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.003289 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.878486 B = 8511.083638 C =10034.722698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.064 3.936 12 N -0.550 5.550 13 C 0.299 3.701 14 N -0.359 5.359 15 C 0.073 3.927 16 C -0.266 4.266 17 C 0.123 3.877 18 C -0.020 4.020 19 C -0.111 4.111 20 C -0.215 4.215 21 S 0.100 5.900 22 C -0.194 4.194 23 N -0.274 5.274 24 C 0.061 3.939 25 C -0.102 4.102 26 H 0.259 0.741 27 H 0.021 0.979 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.174 0.826 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.092 0.908 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -15.543 -9.127 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.064 4.064 12 N -0.278 5.278 13 C 0.089 3.911 14 N -0.141 5.141 15 C -0.073 4.073 16 C -0.295 4.295 17 C -0.044 4.044 18 C -0.034 4.034 19 C -0.141 4.141 20 C -0.350 4.350 21 S 0.362 5.638 22 C -0.332 4.332 23 N -0.096 5.096 24 C -0.066 4.066 25 C -0.140 4.140 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.191 0.809 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.111 0.889 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.624 -15.006 -9.211 20.067 hybrid contribution 1.260 0.605 0.848 1.635 sum -8.365 -14.402 -8.363 18.636 Atomic orbital electron populations 1.69895 1.05877 1.26227 1.50939 1.24980 0.94827 0.99051 0.95178 0.86579 0.80153 0.83999 0.77521 1.19824 1.21068 1.21117 1.21220 0.92872 0.90614 1.50237 0.92690 1.18697 0.92641 0.91780 0.93988 1.21673 0.98687 0.93384 1.00525 1.22101 0.95565 0.99973 0.88730 1.62399 1.24231 1.01734 1.39409 1.22250 0.86919 0.94328 0.87636 1.48581 1.08511 1.49333 1.07698 1.22437 0.99969 1.00270 0.84617 1.21336 0.92963 1.14524 1.00722 1.20196 0.92765 0.99937 0.91531 1.16862 0.91080 1.02355 0.93101 1.20232 0.92398 1.00006 1.01450 1.25463 1.01712 1.09642 0.98137 1.84137 1.09814 1.60086 1.09741 1.25607 0.97865 1.08525 1.01206 1.77597 0.90200 1.20477 1.21353 1.22288 0.92567 0.92110 0.99642 1.21656 1.00114 0.93039 0.99211 0.93126 0.96131 0.92797 0.92364 0.95197 0.92045 0.87839 0.92190 0.80870 0.83682 0.83523 0.81625 0.81409 0.91940 0.95649 0.88938 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 11.37 55.43 0.63 -25.23 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.10 -2.15 5.32 -26.65 -0.14 -2.29 16 11 C 0.06 1.09 5.42 -3.84 -0.02 1.07 16 12 N -0.55 -9.63 4.88 -238.57 -1.16 -10.80 16 13 C 0.30 4.20 6.45 -63.31 -0.41 3.79 16 14 N -0.36 -5.37 2.81 -64.41 -0.18 -5.56 16 15 C 0.07 0.92 11.46 -17.26 -0.20 0.72 16 16 C -0.27 -3.40 10.33 -39.71 -0.41 -3.81 16 17 C 0.12 1.84 7.04 -82.77 -0.58 1.26 16 18 C -0.02 -0.26 5.79 -106.59 -0.62 -0.88 16 19 C -0.11 -1.45 9.92 -40.97 -0.41 -1.86 16 20 C -0.21 -2.31 11.19 28.94 0.32 -1.98 16 21 S 0.10 0.95 23.32 -107.50 -2.51 -1.55 16 22 C -0.19 -2.10 10.73 29.41 0.32 -1.79 16 23 N -0.27 -4.60 10.81 33.43 0.36 -4.24 16 24 C 0.06 1.28 4.90 -3.83 -0.02 1.26 16 25 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.85 8.12 -51.92 -0.42 0.43 16 32 H 0.10 1.11 8.13 -51.93 -0.42 0.68 16 33 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.15 1.44 7.76 -52.49 -0.41 1.03 16 36 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.17 1.43 7.69 -52.49 -0.40 1.03 16 39 H 0.06 1.35 5.98 -51.93 -0.31 1.04 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 2.56 6.17 -51.93 -0.32 2.24 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -31.12 354.78 -11.48 -42.60 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.05 Total: 1.91 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.89 Total: -19.00 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.35 Total: -45.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.12 -11.48 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.535 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds