Wall clock time and date at job start Tue Mar 31 2020 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46612 * 299.99513 * 3 2 1 6 6 H 1.48500 * 109.47344 * 59.99480 * 3 2 1 7 7 C 1.37873 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52319 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.27820 * 182.37262 * 10 9 7 12 12 N 1.46844 * 109.52270 * 59.18322 * 11 10 9 13 13 C 1.46906 * 111.00112 * 174.15769 * 12 11 10 14 14 N 1.46500 * 109.46919 * 169.99428 * 13 12 11 15 15 C 1.35026 * 125.92441 * 94.71893 * 14 13 12 16 16 C 1.35106 * 107.97153 * 179.89349 * 15 14 13 17 17 C 1.40834 * 107.84323 * 0.36581 * 16 15 14 18 18 C 1.48467 * 126.03443 * 179.79218 * 17 16 15 19 19 C 1.39331 * 122.75557 * 184.73224 * 18 17 16 20 20 C 1.33092 * 114.90928 * 179.83644 * 19 18 17 21 21 S 1.75821 * 109.90950 * 0.41142 * 20 19 18 22 22 C 1.34510 * 122.75659 * 5.02779 * 18 17 16 23 23 N 1.31592 * 107.92944 * 359.77341 * 17 16 15 24 24 C 1.46851 * 111.19575 * 298.25434 * 12 11 10 25 25 C 1.53032 * 109.52182 * 61.74475 * 24 12 11 26 26 H 0.96998 * 119.99654 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.52066 * 300.11812 * 9 7 2 28 28 H 1.09006 * 109.50478 * 62.43517 * 10 9 7 29 29 H 1.09000 * 109.53517 * 302.33789 * 10 9 7 30 30 H 1.09004 * 109.46685 * 299.16314 * 11 10 9 31 31 H 1.09010 * 109.45302 * 179.19085 * 11 10 9 32 32 H 1.08992 * 109.47459 * 289.99654 * 13 12 11 33 33 H 1.09004 * 109.47040 * 49.99804 * 13 12 11 34 34 H 1.07995 * 126.01344 * 0.02562 * 15 14 13 35 35 H 1.08001 * 126.08029 * 180.14023 * 16 15 14 36 36 H 1.07993 * 122.55077 * 0.03761 * 19 18 17 37 37 H 1.07992 * 125.04333 * 180.18646 * 20 19 18 38 38 H 1.08002 * 125.22996 * 359.94317 * 22 18 17 39 39 H 1.09005 * 109.46004 * 181.75655 * 24 12 11 40 40 H 1.08992 * 109.46301 * 301.72635 * 24 12 11 41 41 H 1.09001 * 109.50447 * 180.88041 * 25 24 12 42 42 H 1.08994 * 109.53706 * 60.78047 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 -0.0593 12 7 0.6532 -5.0195 -1.2757 13 6 0.0068 -6.3288 -1.4375 14 7 -0.9828 -6.2549 -2.5152 15 6 -0.7743 -6.5897 -3.8066 16 6 -1.9264 -6.3844 -4.4817 17 6 -2.8805 -5.8952 -3.5685 18 6 -4.2846 -5.5304 -3.8839 19 6 -5.1445 -4.9618 -2.9466 20 6 -6.3676 -4.6941 -3.3978 21 16 -6.5021 -5.1738 -5.0839 22 6 -4.8329 -5.7269 -5.0964 23 7 -2.3077 -5.8191 -2.3862 24 6 -0.3406 -3.9384 -1.2759 25 6 0.3751 -2.5859 -1.2524 26 1 -0.4849 0.8401 -0.0004 27 1 0.6221 -2.5566 0.8889 28 1 2.8428 -3.6321 0.9114 29 1 2.8995 -3.5845 -0.8674 30 1 0.8314 -5.0705 0.8164 31 1 2.1804 -5.8160 -0.0739 32 1 0.7591 -7.0773 -1.6858 33 1 -0.4890 -6.6066 -0.5074 34 1 0.1501 -6.9589 -4.2255 35 1 -2.0863 -6.5603 -5.5352 36 1 -4.8407 -4.7512 -1.9319 37 1 -7.1609 -4.2515 -2.8138 38 1 -4.3257 -6.1578 -5.9470 39 1 -0.9540 -4.0091 -2.1742 40 1 -0.9756 -4.0286 -0.3947 41 1 -0.3628 -1.7839 -1.2368 42 1 0.9996 -2.4885 -2.1404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781572002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:10 Heat of formation + Delta-G solvation = 104.221365 kcal Electronic energy + Delta-G solvation = -23795.505744 eV Core-core repulsion = 20482.317929 eV Total energy + Delta-G solvation = -3313.187815 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.19201 -39.79883 -38.65281 -36.00634 -33.97693 -32.28417 -31.60927 -31.04046 -30.29441 -28.03997 -26.16343 -24.87308 -23.87038 -23.28554 -21.95428 -21.61652 -20.42071 -19.53943 -18.55112 -18.48084 -17.80163 -17.37810 -16.49717 -16.22082 -15.83170 -15.31966 -15.09998 -14.91631 -14.64633 -14.51486 -14.29951 -13.96382 -13.85629 -13.80576 -13.37170 -13.23815 -13.21209 -13.03022 -12.88640 -12.65084 -12.31569 -12.09452 -11.95646 -11.85099 -11.56070 -11.43826 -10.93289 -10.81305 -10.71560 -10.42702 -9.75742 -9.66025 -9.37960 -8.96986 -8.10830 -6.25366 -0.09267 0.70172 0.85447 0.95957 1.37896 1.39323 1.41640 1.51208 1.60961 2.41241 2.45811 2.92294 3.16276 3.55322 3.79023 4.05325 4.09605 4.14771 4.17411 4.25959 4.32073 4.42084 4.50543 4.58223 4.69553 4.72165 4.81365 4.83295 4.92031 5.00371 5.00576 5.04783 5.15730 5.24813 5.31424 5.49123 5.51186 5.57471 5.64798 5.81359 5.89763 6.05637 6.08944 6.32874 6.35544 6.77341 6.87707 7.43313 8.93991 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.003289 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.878486 B = 8511.083638 C =10034.722698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.008 3.992 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.044 3.956 10 C -0.098 4.098 11 C 0.069 3.931 12 N -0.551 5.551 13 C 0.299 3.701 14 N -0.373 5.373 15 C 0.076 3.924 16 C -0.273 4.273 17 C 0.112 3.888 18 C -0.054 4.054 19 C -0.140 4.140 20 C -0.217 4.217 21 S 0.156 5.844 22 C -0.187 4.187 23 N -0.327 5.327 24 C 0.086 3.914 25 C -0.091 4.091 26 H 0.259 0.741 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.058 0.942 34 H 0.213 0.787 35 H 0.174 0.826 36 H 0.124 0.876 37 H 0.185 0.815 38 H 0.193 0.807 39 H 0.055 0.945 40 H 0.001 0.999 41 H 0.052 0.948 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 -17.229 -11.008 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.136 4.136 11 C -0.058 4.058 12 N -0.278 5.278 13 C 0.089 3.911 14 N -0.156 5.156 15 C -0.069 4.069 16 C -0.303 4.303 17 C -0.055 4.055 18 C -0.068 4.068 19 C -0.171 4.171 20 C -0.352 4.352 21 S 0.419 5.581 22 C -0.326 4.326 23 N -0.150 5.150 24 C -0.042 4.042 25 C -0.129 4.129 26 H 0.068 0.932 27 H 0.002 0.998 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.128 0.872 32 H 0.169 0.831 33 H 0.076 0.924 34 H 0.230 0.770 35 H 0.191 0.809 36 H 0.142 0.858 37 H 0.202 0.798 38 H 0.210 0.790 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.070 0.930 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.679 -16.713 -11.094 21.857 hybrid contribution 0.863 1.117 1.371 1.968 sum -7.816 -15.596 -9.723 19.971 Atomic orbital electron populations 1.70064 1.07413 1.26953 1.51690 1.25823 0.95630 1.02690 0.94863 0.85540 0.79249 0.79597 0.77495 1.18723 1.20817 1.20660 1.21630 0.93135 0.92068 1.50066 0.92592 1.18665 0.93149 0.93274 0.92368 1.21534 0.97795 0.93418 1.00876 1.22078 0.95921 0.99468 0.88369 1.62346 1.23374 1.02509 1.39598 1.22503 0.87826 0.92792 0.87987 1.48684 1.08097 1.50035 1.08764 1.23134 1.01289 0.98874 0.83572 1.21746 0.92477 1.14168 1.01863 1.20662 0.93767 0.99321 0.91708 1.17025 0.91029 1.04463 0.94320 1.20199 0.93768 1.02140 1.00963 1.25769 1.01272 1.08579 0.99592 1.83944 1.08150 1.58382 1.07639 1.25976 0.98764 1.06968 1.00862 1.77545 0.91690 1.22748 1.22991 1.21792 0.92429 0.91818 0.98142 1.21390 0.98947 0.94183 0.98414 0.93226 0.99775 0.91938 0.92486 0.95729 0.87166 0.83137 0.92404 0.77043 0.80883 0.85838 0.79767 0.78973 0.92671 0.98047 0.92973 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 11.37 21.45 0.24 -55.62 16 2 C 0.01 0.46 5.31 84.65 0.45 0.91 16 3 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -30.13 8.56 25.60 0.22 -29.91 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.04 2.29 2.16 -11.46 -0.02 2.26 16 10 C -0.10 -3.98 5.32 30.65 0.16 -3.82 16 11 C 0.07 2.22 5.42 86.32 0.47 2.69 16 12 N -0.55 -18.67 4.88 -908.71 -4.43 -23.10 16 13 C 0.30 7.77 6.45 170.80 1.10 8.87 16 14 N -0.37 -10.81 2.81 -357.70 -1.01 -11.81 16 15 C 0.08 1.74 11.46 83.48 0.96 2.70 16 16 C -0.27 -6.54 10.33 22.18 0.23 -6.31 16 17 C 0.11 3.40 7.04 42.54 0.30 3.70 16 18 C -0.05 -1.47 5.79 -21.14 -0.12 -1.60 16 19 C -0.14 -3.88 9.92 21.38 0.21 -3.67 16 20 C -0.22 -4.62 11.19 66.67 0.75 -3.87 16 21 S 0.16 2.67 23.32 -56.49 -1.32 1.36 16 22 C -0.19 -3.78 10.73 66.97 0.72 -3.06 16 23 N -0.33 -11.35 10.81 -48.14 -0.52 -11.87 16 24 C 0.09 3.76 4.90 86.32 0.42 4.18 16 25 C -0.09 -4.69 5.12 30.64 0.16 -4.53 16 26 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 2.57 8.12 -2.38 -0.02 2.55 16 32 H 0.15 2.52 8.13 -2.39 -0.02 2.50 16 33 H 0.06 1.55 8.08 -2.38 -0.02 1.53 16 34 H 0.21 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.17 2.93 7.76 -2.91 -0.02 2.91 16 36 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.19 2.74 7.69 -2.91 -0.02 2.72 16 39 H 0.05 2.49 5.98 -2.38 -0.01 2.47 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.05 3.09 6.17 -2.39 -0.01 3.07 16 42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.56 354.78 2.00 -70.56 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.01 Total: 15.02 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 6.00 Total: -31.46 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -5.71 Total: -102.39 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.32 Total: 1.36 kcal Total: -72.56 2.00 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.777 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds