Wall clock time and date at job start Tue Mar 31 2020 11:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99720 * 2 1 4 4 H 1.48504 * 109.47104 * 274.98826 * 3 2 1 5 5 H 1.48495 * 109.47323 * 34.98475 * 3 2 1 6 6 H 1.48496 * 109.47276 * 154.98916 * 3 2 1 7 7 C 1.37875 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99920 * 189.58104 * 7 2 1 9 9 C 1.50697 * 120.00058 * 9.57940 * 7 2 1 10 10 C 1.53039 * 109.46012 * 185.45429 * 9 7 2 11 11 C 1.53195 * 109.31294 * 178.62771 * 10 9 7 12 12 N 1.46930 * 108.77564 * 54.63296 * 11 10 9 13 13 C 1.34767 * 120.63255 * 126.37094 * 12 11 10 14 14 O 1.21284 * 120.00229 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00073 * 179.97438 * 13 12 11 16 16 O 1.42907 * 109.47464 * 179.97438 * 15 13 12 17 17 C 1.35587 * 117.00277 * 180.02562 * 16 15 13 18 18 C 1.38699 * 120.17291 * 359.97438 * 17 16 15 19 19 C 1.38047 * 120.11072 * 180.29836 * 18 17 16 20 20 C 1.38625 * 120.45890 * 359.44438 * 19 18 17 21 21 C 1.37685 * 120.33592 * 0.55964 * 20 19 18 22 22 C 1.40018 * 119.87756 * 359.71911 * 21 20 19 23 23 C 1.46788 * 120.21896 * 180.02562 * 22 21 20 24 24 O 1.21296 * 120.00113 * 359.97438 * 23 22 21 25 25 C 1.46933 * 118.73677 * 306.64166 * 12 11 10 26 26 C 1.52761 * 109.00654 * 53.31291 * 25 12 11 27 27 H 0.96999 * 120.00404 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.45623 * 305.42151 * 9 7 2 29 29 H 1.08996 * 109.49924 * 58.67470 * 10 9 7 30 30 H 1.08999 * 109.52063 * 298.59258 * 10 9 7 31 31 H 1.09004 * 109.58615 * 294.84594 * 11 10 9 32 32 H 1.09003 * 109.70622 * 174.48890 * 11 10 9 33 33 H 1.09002 * 109.47089 * 60.00201 * 15 13 12 34 34 H 1.08995 * 109.47459 * 299.99930 * 15 13 12 35 35 H 1.07993 * 119.94028 * 0.02562 * 18 17 16 36 36 H 1.08006 * 119.77274 * 179.70686 * 19 18 17 37 37 H 1.07998 * 119.83733 * 180.27903 * 20 19 18 38 38 H 1.08001 * 120.06000 * 179.74473 * 21 20 19 39 39 H 1.08002 * 119.99844 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.58469 * 173.14046 * 25 12 11 41 41 H 1.08998 * 109.58764 * 293.57148 * 25 12 11 42 42 H 1.09004 * 109.56618 * 185.55430 * 26 25 12 43 43 H 1.08998 * 109.39063 * 65.51078 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5031 2.6200 0.8027 6 1 3.5953 1.4122 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1562 9 6 1.2669 -2.4901 -0.2161 10 6 2.2329 -3.6631 -0.0343 11 6 1.4723 -4.9796 -0.2213 12 7 0.7940 -4.9528 -1.5245 13 6 0.9781 -5.9474 -2.4150 14 8 1.7091 -6.8765 -2.1440 15 6 0.2749 -5.9058 -3.7472 16 8 0.6286 -7.0620 -4.5090 17 6 0.0777 -7.1788 -5.7423 18 6 -0.7873 -6.2030 -6.2147 19 6 -1.3523 -6.3262 -7.4682 20 6 -1.0531 -7.4170 -8.2697 21 6 -0.1969 -8.3968 -7.8194 22 6 0.3796 -8.2888 -6.5480 23 6 1.2939 -9.3287 -6.0607 24 8 1.5518 -10.2857 -6.7599 25 6 -0.0842 -3.8180 -1.8406 26 6 0.6896 -2.5173 -1.6332 27 1 -0.4851 0.8400 -0.0004 28 1 0.4561 -2.5719 0.5080 29 1 2.6614 -3.6296 0.9674 30 1 3.0309 -3.5957 -0.7737 31 1 0.7339 -5.0910 0.5727 32 1 2.1712 -5.8155 -0.1903 33 1 0.5751 -5.0087 -4.2886 34 1 -0.8034 -5.8908 -3.5886 35 1 -1.0227 -5.3475 -5.5991 36 1 -2.0289 -5.5655 -7.8287 37 1 -1.4973 -7.5011 -9.2505 38 1 0.0299 -9.2467 -8.4460 39 1 1.7369 -9.2417 -5.0796 40 1 -0.4099 -3.8861 -2.8785 41 1 -0.9520 -3.8328 -1.1813 42 1 0.0197 -1.6683 -1.7694 43 1 1.5018 -2.4599 -2.3579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782054101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:56 Heat of formation + Delta-G solvation = -83.456010 kcal Electronic energy + Delta-G solvation = -25907.877046 eV Core-core repulsion = 22111.505307 eV Total energy + Delta-G solvation = -3796.371739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87048 -39.79930 -38.74725 -37.53370 -36.78719 -33.66548 -31.95296 -31.50118 -30.66531 -30.34809 -28.42750 -26.12412 -25.11283 -23.29133 -22.71266 -22.19704 -21.30897 -20.12620 -18.71973 -18.54875 -17.12444 -16.92803 -16.60023 -16.38456 -16.08700 -15.72140 -15.06822 -14.78889 -14.57950 -14.51332 -14.35717 -14.14311 -13.70506 -13.34607 -13.13368 -13.01528 -12.72521 -12.61528 -12.35679 -12.15827 -11.79473 -11.56345 -11.50722 -11.41303 -11.00649 -10.74737 -10.53240 -10.31859 -9.90659 -9.83367 -9.60986 -9.40594 -9.21818 -9.12227 -8.62764 -8.45399 -8.24490 -6.15621 -4.17157 0.37991 1.04454 2.26528 2.35961 2.65069 3.21959 3.30407 3.33662 3.47207 3.47822 4.10410 4.33950 4.34923 4.44331 4.59890 4.69349 4.83568 4.90290 4.91983 5.14062 5.17417 5.31878 5.36416 5.49789 5.64708 5.74273 5.75623 5.87303 5.98163 6.01891 6.03282 6.10856 6.25761 6.32269 6.47227 6.71466 6.86121 6.90327 6.93635 7.03437 7.29622 7.51070 7.63921 7.76309 7.85115 8.25717 8.29086 8.86548 9.47380 10.93066 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002723 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.664576 B =10281.431401 C =11151.167519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.047 3.953 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.595 5.595 13 C 0.515 3.485 14 O -0.534 6.534 15 C 0.040 3.960 16 O -0.284 6.284 17 C 0.185 3.815 18 C -0.226 4.226 19 C -0.042 4.042 20 C -0.176 4.176 21 C -0.023 4.023 22 C -0.225 4.225 23 C 0.391 3.609 24 O -0.472 6.472 25 C 0.101 3.899 26 C -0.120 4.120 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -10.656 -12.363 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.028 3.972 10 C -0.162 4.162 11 C -0.008 4.008 12 N -0.329 5.329 13 C 0.300 3.700 14 O -0.411 6.411 15 C -0.038 4.038 16 O -0.195 6.195 17 C 0.137 3.863 18 C -0.245 4.245 19 C -0.060 4.060 20 C -0.194 4.194 21 C -0.041 4.041 22 C -0.227 4.227 23 C 0.251 3.749 24 O -0.347 6.347 25 C -0.021 4.021 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.940 -11.659 -12.447 17.755 hybrid contribution 0.069 1.643 -0.036 1.645 sum -4.870 -10.016 -12.483 16.729 Atomic orbital electron populations 1.69935 1.05897 1.26663 1.50253 1.24946 0.94786 0.99074 0.94907 0.86664 0.80147 0.83713 0.78023 1.20710 1.21283 1.19876 1.21158 0.94183 0.90839 1.49190 0.92623 1.18650 0.94238 0.91912 0.92377 1.22021 0.99025 0.94033 1.01102 1.21781 0.96470 1.00063 0.82506 1.48131 1.46712 1.21358 1.16665 1.19766 0.82419 0.82901 0.84874 1.90707 1.38188 1.34204 1.77978 1.22709 1.00928 0.88304 0.91868 1.86045 1.65626 1.43125 1.24690 1.19293 0.90210 0.92920 0.83842 1.21339 1.02846 1.01030 0.99240 1.21230 0.95678 0.96633 0.92506 1.21065 1.01664 0.95574 1.01099 1.21312 0.92020 0.97701 0.93087 1.20313 1.07563 0.98280 0.96511 1.23900 0.77425 0.82061 0.91487 1.90496 1.54291 1.30779 1.59094 1.22006 0.93332 0.87306 0.99503 1.21901 0.99244 0.94082 1.00638 0.92948 0.94589 0.91734 0.92901 0.91735 0.90050 0.88380 0.88590 0.84499 0.85070 0.85255 0.84339 0.86992 0.91810 0.91163 0.89375 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.47 12.16 55.43 0.67 -22.79 16 2 C 0.06 1.66 5.19 -17.82 -0.09 1.57 16 3 Si 0.89 20.10 29.55 -169.99 -5.02 15.07 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.06 8.48 -34.44 -0.29 -13.35 16 8 H 0.06 1.42 7.77 -52.48 -0.41 1.02 16 9 C 0.05 1.03 1.93 -91.73 -0.18 0.85 16 10 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 11 C 0.11 1.88 6.44 -3.71 -0.02 1.86 16 12 N -0.59 -9.36 2.98 -173.03 -0.52 -9.87 16 13 C 0.51 7.98 7.77 -10.99 -0.09 7.89 16 14 O -0.53 -10.07 15.91 -14.36 -0.23 -10.30 16 15 C 0.04 0.46 3.57 36.00 0.13 0.59 16 16 O -0.28 -3.59 8.85 -38.37 -0.34 -3.93 16 17 C 0.18 2.04 6.71 -38.58 -0.26 1.78 16 18 C -0.23 -2.02 9.03 -39.48 -0.36 -2.38 16 19 C -0.04 -0.32 10.03 -39.51 -0.40 -0.72 16 20 C -0.18 -1.39 10.02 -39.64 -0.40 -1.78 16 21 C -0.02 -0.22 9.59 -39.12 -0.38 -0.60 16 22 C -0.22 -2.52 5.88 -104.94 -0.62 -3.14 16 23 C 0.39 4.72 11.19 34.19 0.38 5.10 16 24 O -0.47 -6.80 17.16 5.54 0.10 -6.71 16 25 C 0.10 1.50 6.31 -3.93 -0.02 1.48 16 26 C -0.12 -2.34 5.19 -26.83 -0.14 -2.48 16 27 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 33 H 0.10 0.96 7.20 -51.93 -0.37 0.59 16 34 H 0.10 0.86 7.47 -51.93 -0.39 0.47 16 35 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.23 7.65 -52.49 -0.40 0.83 16 39 H 0.11 1.26 7.64 -52.49 -0.40 0.86 16 40 H 0.06 0.73 5.93 -51.93 -0.31 0.42 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.92 6.87 -51.93 -0.36 1.56 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -30.44 357.62 -8.66 -39.10 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.85 Total: -0.15 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.87 Total: -5.80 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.16 Total: -32.66 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.47 Total: -20.94 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.44 -8.66 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.361 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds