Wall clock time and date at job start Tue Mar 31 2020 11:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99720 * 2 1 4 4 H 1.48504 * 109.47104 * 274.98826 * 3 2 1 5 5 H 1.48495 * 109.47323 * 34.98475 * 3 2 1 6 6 H 1.48496 * 109.47276 * 154.98916 * 3 2 1 7 7 C 1.37875 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99920 * 189.58104 * 7 2 1 9 9 C 1.50697 * 120.00058 * 9.57940 * 7 2 1 10 10 C 1.53039 * 109.46012 * 185.45429 * 9 7 2 11 11 C 1.53195 * 109.31294 * 178.62771 * 10 9 7 12 12 N 1.46930 * 108.77564 * 54.63296 * 11 10 9 13 13 C 1.34767 * 120.63255 * 126.37094 * 12 11 10 14 14 O 1.21284 * 120.00229 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00073 * 179.97438 * 13 12 11 16 16 O 1.42907 * 109.47464 * 179.97438 * 15 13 12 17 17 C 1.35587 * 117.00277 * 180.02562 * 16 15 13 18 18 C 1.38699 * 120.17291 * 359.97438 * 17 16 15 19 19 C 1.38047 * 120.11072 * 180.29836 * 18 17 16 20 20 C 1.38625 * 120.45890 * 359.44438 * 19 18 17 21 21 C 1.37685 * 120.33592 * 0.55964 * 20 19 18 22 22 C 1.40018 * 119.87756 * 359.71911 * 21 20 19 23 23 C 1.46788 * 120.21896 * 180.02562 * 22 21 20 24 24 O 1.21296 * 120.00113 * 359.97438 * 23 22 21 25 25 C 1.46933 * 118.73677 * 306.64166 * 12 11 10 26 26 C 1.52761 * 109.00654 * 53.31291 * 25 12 11 27 27 H 0.96999 * 120.00404 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.45623 * 305.42151 * 9 7 2 29 29 H 1.08996 * 109.49924 * 58.67470 * 10 9 7 30 30 H 1.08999 * 109.52063 * 298.59258 * 10 9 7 31 31 H 1.09004 * 109.58615 * 294.84594 * 11 10 9 32 32 H 1.09003 * 109.70622 * 174.48890 * 11 10 9 33 33 H 1.09002 * 109.47089 * 60.00201 * 15 13 12 34 34 H 1.08995 * 109.47459 * 299.99930 * 15 13 12 35 35 H 1.07993 * 119.94028 * 0.02562 * 18 17 16 36 36 H 1.08006 * 119.77274 * 179.70686 * 19 18 17 37 37 H 1.07998 * 119.83733 * 180.27903 * 20 19 18 38 38 H 1.08001 * 120.06000 * 179.74473 * 21 20 19 39 39 H 1.08002 * 119.99844 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.58469 * 173.14046 * 25 12 11 41 41 H 1.08998 * 109.58764 * 293.57148 * 25 12 11 42 42 H 1.09004 * 109.56618 * 185.55430 * 26 25 12 43 43 H 1.08998 * 109.39063 * 65.51078 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5031 2.6200 0.8027 6 1 3.5953 1.4122 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1562 9 6 1.2669 -2.4901 -0.2161 10 6 2.2329 -3.6631 -0.0343 11 6 1.4723 -4.9796 -0.2213 12 7 0.7940 -4.9528 -1.5245 13 6 0.9781 -5.9474 -2.4150 14 8 1.7091 -6.8765 -2.1440 15 6 0.2749 -5.9058 -3.7472 16 8 0.6286 -7.0620 -4.5090 17 6 0.0777 -7.1788 -5.7423 18 6 -0.7873 -6.2030 -6.2147 19 6 -1.3523 -6.3262 -7.4682 20 6 -1.0531 -7.4170 -8.2697 21 6 -0.1969 -8.3968 -7.8194 22 6 0.3796 -8.2888 -6.5480 23 6 1.2939 -9.3287 -6.0607 24 8 1.5518 -10.2857 -6.7599 25 6 -0.0842 -3.8180 -1.8406 26 6 0.6896 -2.5173 -1.6332 27 1 -0.4851 0.8400 -0.0004 28 1 0.4561 -2.5719 0.5080 29 1 2.6614 -3.6296 0.9674 30 1 3.0309 -3.5957 -0.7737 31 1 0.7339 -5.0910 0.5727 32 1 2.1712 -5.8155 -0.1903 33 1 0.5751 -5.0087 -4.2886 34 1 -0.8034 -5.8908 -3.5886 35 1 -1.0227 -5.3475 -5.5991 36 1 -2.0289 -5.5655 -7.8287 37 1 -1.4973 -7.5011 -9.2505 38 1 0.0299 -9.2467 -8.4460 39 1 1.7369 -9.2417 -5.0796 40 1 -0.4099 -3.8861 -2.8785 41 1 -0.9520 -3.8328 -1.1813 42 1 0.0197 -1.6683 -1.7694 43 1 1.5018 -2.4599 -2.3579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782054101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:55 Heat of formation + Delta-G solvation = -99.654190 kcal Electronic energy + Delta-G solvation = -25908.579452 eV Core-core repulsion = 22111.505307 eV Total energy + Delta-G solvation = -3797.074145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75855 -40.92468 -39.74714 -38.55675 -37.97230 -35.34250 -33.31733 -32.49646 -31.92664 -31.27115 -29.48714 -27.74056 -25.90597 -24.77314 -24.00904 -23.18337 -22.16173 -21.49202 -19.89890 -19.52258 -18.51365 -18.00425 -17.75701 -17.49909 -17.06034 -16.84090 -16.46367 -15.95177 -15.81495 -15.35116 -15.19729 -15.12673 -14.89438 -14.79549 -14.57769 -14.35702 -14.01783 -13.69945 -13.39500 -13.24692 -13.20841 -12.81175 -12.77891 -12.49678 -12.22539 -12.20088 -12.15137 -11.96409 -11.48263 -11.09025 -10.90166 -10.83126 -10.68137 -10.38699 -10.09291 -9.61741 -9.34490 -8.11560 -6.18269 -0.37754 0.37193 1.39244 1.40905 1.43691 1.44930 1.49058 1.52703 2.41179 2.45244 2.77380 3.18636 3.28853 3.35282 3.74875 3.87250 3.98194 4.03909 4.13320 4.26490 4.26654 4.31558 4.35106 4.43336 4.46873 4.58232 4.60115 4.70870 4.86216 4.87015 4.97396 5.09755 5.19104 5.24833 5.35413 5.37470 5.46731 5.47990 5.66455 5.68476 5.99345 6.06214 6.14985 6.37529 6.39728 6.42173 6.91413 7.05163 7.48243 8.95775 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002723 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.664576 B =10281.431401 C =11151.167519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.044 0.956 9 C 0.043 3.957 10 C -0.114 4.114 11 C 0.119 3.881 12 N -0.597 5.597 13 C 0.512 3.488 14 O -0.573 6.573 15 C 0.043 3.957 16 O -0.307 6.307 17 C 0.172 3.828 18 C -0.227 4.227 19 C -0.035 4.035 20 C -0.171 4.171 21 C -0.034 4.034 22 C -0.247 4.247 23 C 0.394 3.606 24 O -0.505 6.505 25 C 0.110 3.890 26 C -0.112 4.112 27 H 0.262 0.738 28 H 0.010 0.990 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -9.835 -14.190 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.152 4.152 11 C -0.004 4.004 12 N -0.330 5.330 13 C 0.300 3.700 14 O -0.453 6.453 15 C -0.034 4.034 16 O -0.219 6.219 17 C 0.125 3.875 18 C -0.245 4.245 19 C -0.053 4.053 20 C -0.189 4.189 21 C -0.052 4.052 22 C -0.249 4.249 23 C 0.257 3.743 24 O -0.382 6.382 25 C -0.012 4.012 26 C -0.151 4.151 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.606 -10.823 -14.276 19.094 hybrid contribution 0.581 1.420 0.538 1.626 sum -6.025 -9.403 -13.738 17.704 Atomic orbital electron populations 1.70014 1.06739 1.27224 1.50925 1.25534 0.95517 1.01621 0.94879 0.85830 0.78888 0.80536 0.78100 1.20100 1.21130 1.20050 1.21505 0.93951 0.92708 1.49174 0.93775 1.18625 0.93770 0.91677 0.93475 1.21859 0.98330 0.94373 1.00669 1.21611 0.96638 0.98285 0.83825 1.48151 1.46675 1.21797 1.16372 1.20474 0.81742 0.81828 0.85953 1.90692 1.39989 1.35685 1.78959 1.22776 1.02166 0.88930 0.89561 1.86003 1.66502 1.43746 1.25622 1.19403 0.91153 0.93595 0.83315 1.21652 1.01934 1.00927 1.00031 1.21667 0.95079 0.96848 0.91710 1.21421 1.00463 0.94802 1.02195 1.21455 0.92608 0.98519 0.92597 1.20307 1.08434 0.98533 0.97626 1.24045 0.77122 0.81846 0.91274 1.90475 1.55740 1.32129 1.59866 1.21956 0.92251 0.84455 1.02513 1.21670 0.98963 0.95970 0.98485 0.92910 0.97190 0.92044 0.93843 0.90783 0.90208 0.86038 0.85193 0.82213 0.81784 0.82628 0.84429 0.86918 0.87188 0.90644 0.91659 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.14 12.16 21.45 0.26 -47.88 16 2 C 0.02 1.24 5.19 84.66 0.44 1.68 16 3 Si 0.94 41.20 29.55 68.60 2.03 43.22 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -27.48 8.48 25.60 0.22 -27.26 16 8 H 0.04 2.30 7.77 -2.91 -0.02 2.28 16 9 C 0.04 1.91 1.93 -11.51 -0.02 1.89 16 10 C -0.11 -4.35 5.30 30.67 0.16 -4.19 16 11 C 0.12 3.87 6.44 86.36 0.56 4.43 16 12 N -0.60 -17.66 2.98 -819.72 -2.44 -20.11 16 13 C 0.51 14.89 7.77 87.66 0.68 15.58 16 14 O -0.57 -21.36 15.91 15.99 0.25 -21.11 16 15 C 0.04 0.84 3.57 71.24 0.25 1.09 16 16 O -0.31 -7.21 8.85 -69.92 -0.62 -7.83 16 17 C 0.17 3.44 6.71 22.92 0.15 3.59 16 18 C -0.23 -3.15 9.03 22.33 0.20 -2.95 16 19 C -0.04 -0.38 10.03 22.32 0.22 -0.16 16 20 C -0.17 -2.12 10.02 22.23 0.22 -1.90 16 21 C -0.03 -0.60 9.59 22.57 0.22 -0.38 16 22 C -0.25 -5.36 5.88 -20.07 -0.12 -5.48 16 23 C 0.39 9.81 11.19 70.06 0.78 10.59 16 24 O -0.50 -15.12 17.16 -3.08 -0.05 -15.17 16 25 C 0.11 2.99 6.31 86.22 0.54 3.53 16 26 C -0.11 -4.26 5.19 30.53 0.16 -4.10 16 27 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 28 H 0.01 0.49 8.09 -2.38 -0.02 0.47 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.65 7.00 -2.39 -0.02 2.64 16 33 H 0.12 1.83 7.20 -2.39 -0.02 1.81 16 34 H 0.13 1.67 7.47 -2.39 -0.02 1.65 16 35 H 0.16 1.41 6.30 -2.91 -0.02 1.39 16 36 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.14 2.38 7.65 -2.91 -0.02 2.36 16 39 H 0.11 2.67 7.64 -2.91 -0.02 2.65 16 40 H 0.11 2.00 5.93 -2.39 -0.01 1.99 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 2.80 6.87 -2.38 -0.02 2.78 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -68.11 357.62 5.12 -62.99 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.02 Total: 9.92 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.68 Total: -4.04 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -2.18 Total: -67.99 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.42 Total: -44.11 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -68.11 5.12 -62.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.668 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds