Wall clock time and date at job start Tue Mar 31 2020 11:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48506 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47531 * 59.99986 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21276 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99585 * 180.02562 * 13 12 11 16 16 O 1.42899 * 109.47008 * 179.97438 * 15 13 12 17 17 C 1.35664 * 117.00199 * 179.97438 * 16 15 13 18 18 C 1.39081 * 119.88114 * 359.72952 * 17 16 15 19 19 C 1.37124 * 120.10898 * 179.72120 * 18 17 16 20 20 C 1.40036 * 119.88631 * 0.57142 * 19 18 17 21 21 C 1.46856 * 120.11326 * 179.68065 * 20 19 18 22 22 O 1.21294 * 120.00463 * 0.02562 * 21 20 19 23 23 C 1.40041 * 119.77153 * 359.70380 * 20 19 18 24 24 C 1.37118 * 119.87995 * 359.97438 * 23 20 19 25 25 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 26 26 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 27 27 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 29 29 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 30 30 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 31 31 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 32 32 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 33 33 H 1.09002 * 109.47438 * 299.99718 * 15 13 12 34 34 H 1.08999 * 109.47522 * 60.00065 * 15 13 12 35 35 H 1.07989 * 119.94680 * 0.02562 * 18 17 16 36 36 H 1.08008 * 120.05642 * 180.27648 * 19 18 17 37 37 H 1.08002 * 119.99549 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.05789 * 179.97438 * 23 20 19 39 39 H 1.08004 * 119.93673 * 179.97438 * 24 23 20 40 40 H 1.09001 * 109.46843 * 293.57352 * 25 12 11 41 41 H 1.08997 * 109.71602 * 173.28846 * 25 12 11 42 42 H 1.08995 * 109.49643 * 301.32932 * 26 9 7 43 43 H 1.08996 * 109.49892 * 61.43126 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2922 -6.9546 -1.8205 15 6 -0.4779 -6.0481 -3.0912 16 8 -0.2938 -7.2316 -3.8706 17 6 -1.1093 -7.3966 -4.9422 18 6 -2.0733 -6.4373 -5.2334 19 6 -2.8963 -6.5965 -6.3186 20 6 -2.7727 -7.7331 -7.1273 21 6 -3.6562 -7.9121 -8.2867 22 8 -4.4943 -7.0744 -8.5456 23 6 -1.8042 -8.6988 -6.8262 24 6 -0.9819 -8.5268 -5.7425 25 6 -0.4199 -3.8913 -1.2280 26 6 0.3707 -2.5793 -1.2487 27 1 -0.4851 0.8400 -0.0004 28 1 0.6246 -2.5568 0.8906 29 1 2.8883 -3.5914 0.8783 30 1 2.8564 -3.6194 -0.9015 31 1 2.1755 -5.8175 -0.0644 32 1 0.9394 -5.0725 0.9795 33 1 -1.4925 -6.0290 -2.6933 34 1 -0.3172 -5.1716 -3.7189 35 1 -2.1707 -5.5633 -4.6067 36 1 -3.6417 -5.8488 -6.5466 37 1 -3.5595 -8.7896 -8.9088 38 1 -1.7052 -9.5773 -7.4465 39 1 -0.2349 -9.2711 -5.5093 40 1 -1.1142 -3.8866 -0.3877 41 1 -0.9750 -3.9982 -2.1599 42 1 -0.3218 -1.7377 -1.2603 43 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782056266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:59 Heat of formation + Delta-G solvation = -82.915408 kcal Electronic energy + Delta-G solvation = -25586.862541 eV Core-core repulsion = 21790.514245 eV Total energy + Delta-G solvation = -3796.348297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78975 -39.82101 -39.05562 -37.39570 -36.71180 -33.66973 -31.81900 -31.50171 -30.90444 -30.28102 -28.48494 -26.13677 -24.69085 -23.45845 -22.79701 -22.31323 -21.20879 -20.11449 -18.75810 -18.53091 -17.18892 -16.96904 -16.53115 -16.37040 -16.04698 -15.74028 -15.05206 -14.70761 -14.63527 -14.60123 -14.39032 -13.87330 -13.62065 -13.32182 -13.17038 -13.02902 -12.89461 -12.69639 -12.50247 -12.31299 -11.75971 -11.43327 -11.30734 -11.22564 -11.02650 -10.69666 -10.49301 -10.22346 -10.10219 -9.81365 -9.56041 -9.48083 -9.28021 -9.04500 -8.58178 -8.47659 -8.19048 -6.11921 -4.17904 0.38072 1.01901 2.15699 2.44261 2.69070 3.22016 3.31085 3.34905 3.47666 3.53653 3.96805 4.33535 4.34371 4.43531 4.54650 4.75818 4.87902 4.90317 4.94599 5.12920 5.17453 5.20007 5.37127 5.64252 5.66679 5.79576 5.81631 5.91506 5.93308 6.02026 6.03338 6.09859 6.26840 6.31889 6.52530 6.74228 6.89721 6.97504 7.01541 7.13888 7.14149 7.55477 7.68781 7.80479 7.93229 8.29949 8.30600 8.85794 9.47946 10.93781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002592 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.093697 B =10798.926535 C =12067.619112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.595 5.595 13 C 0.514 3.486 14 O -0.535 6.535 15 C 0.039 3.961 16 O -0.283 6.283 17 C 0.172 3.828 18 C -0.228 4.228 19 C -0.014 4.014 20 C -0.243 4.243 21 C 0.386 3.614 22 O -0.469 6.469 23 C -0.027 4.027 24 C -0.167 4.167 25 C 0.099 3.901 26 C -0.125 4.125 27 H 0.260 0.740 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 -15.207 -10.996 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.162 4.162 11 C -0.008 4.008 12 N -0.329 5.329 13 C 0.300 3.700 14 O -0.413 6.413 15 C -0.039 4.039 16 O -0.194 6.194 17 C 0.124 3.876 18 C -0.246 4.246 19 C -0.032 4.032 20 C -0.244 4.244 21 C 0.246 3.754 22 O -0.344 6.344 23 C -0.045 4.045 24 C -0.185 4.185 25 C -0.022 4.022 26 C -0.164 4.164 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.007 -15.232 -10.962 19.704 hybrid contribution 0.365 1.274 0.109 1.330 sum -5.642 -13.958 -10.853 18.559 Atomic orbital electron populations 1.69824 1.05857 1.26481 1.50958 1.24959 0.94890 0.99131 0.94997 0.86552 0.80203 0.83746 0.77613 1.19812 1.21028 1.21008 1.21231 0.93036 0.90466 1.50248 0.92572 1.18647 0.92661 0.91862 0.93917 1.22025 0.98939 0.94005 1.01246 1.21752 0.91574 0.99991 0.87484 1.48173 1.36388 1.20456 1.27898 1.19787 0.84574 0.82767 0.82845 1.90698 1.40707 1.35876 1.73988 1.22693 1.00376 0.87691 0.93114 1.86122 1.54737 1.41485 1.37063 1.19515 0.88179 0.93679 0.86182 1.21236 0.99839 1.01490 1.02067 1.21110 0.95466 0.95464 0.91155 1.20821 1.03113 0.98497 1.01967 1.23889 0.79525 0.88501 0.83475 1.90537 1.31277 1.43965 1.68582 1.21054 0.91613 0.97223 0.94607 1.20316 1.03670 0.97929 0.96608 1.22142 0.91700 0.87737 1.00670 1.22052 1.00148 0.94351 0.99839 0.92961 0.95306 0.91849 0.92838 0.90135 0.91816 0.88696 0.88447 0.84547 0.84616 0.88143 0.84295 0.84255 0.91333 0.91837 0.87497 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 11.31 55.43 0.63 -22.95 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.12 8.56 -34.44 -0.29 -13.42 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.05 1.07 2.07 -91.73 -0.19 0.88 16 10 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 11 C 0.11 1.95 6.43 -3.71 -0.02 1.93 16 12 N -0.60 -9.87 2.98 -172.74 -0.51 -10.39 16 13 C 0.51 8.49 7.78 -10.98 -0.09 8.41 16 14 O -0.54 -10.65 15.91 -14.35 -0.23 -10.88 16 15 C 0.04 0.50 3.56 36.01 0.13 0.63 16 16 O -0.28 -3.88 9.65 -38.60 -0.37 -4.25 16 17 C 0.17 1.94 6.70 -38.96 -0.26 1.68 16 18 C -0.23 -2.30 8.99 -39.67 -0.36 -2.66 16 19 C -0.01 -0.13 9.57 -39.31 -0.38 -0.51 16 20 C -0.24 -2.08 5.87 -105.06 -0.62 -2.70 16 21 C 0.39 3.01 11.44 34.22 0.39 3.41 16 22 O -0.47 -5.59 17.16 5.55 0.10 -5.50 16 23 C -0.03 -0.19 9.77 -39.31 -0.38 -0.58 16 24 C -0.17 -1.56 9.95 -39.68 -0.39 -1.96 16 25 C 0.10 1.58 6.33 -3.69 -0.02 1.56 16 26 C -0.13 -2.56 5.15 -26.61 -0.14 -2.70 16 27 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.39 7.01 -51.93 -0.36 1.03 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 0.96 7.44 -51.93 -0.39 0.57 16 34 H 0.10 1.08 7.21 -51.93 -0.37 0.71 16 35 H 0.14 1.19 6.27 -52.49 -0.33 0.86 16 36 H 0.14 1.28 7.64 -52.48 -0.40 0.88 16 37 H 0.10 0.37 8.06 -52.49 -0.42 -0.06 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.81 5.95 -51.93 -0.31 0.50 16 42 H 0.11 2.45 6.03 -51.93 -0.31 2.14 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -31.47 357.26 -8.71 -40.18 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.82 Total: 0.18 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.86 Total: -7.08 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.11 Total: -33.33 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.51 Total: -20.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.47 -8.71 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782056266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.736 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds