Wall clock time and date at job start Tue Mar 31 2020 11:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48506 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47531 * 59.99986 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21276 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99585 * 180.02562 * 13 12 11 16 16 O 1.42899 * 109.47008 * 179.97438 * 15 13 12 17 17 C 1.35664 * 117.00199 * 179.97438 * 16 15 13 18 18 C 1.39081 * 119.88114 * 359.72952 * 17 16 15 19 19 C 1.37124 * 120.10898 * 179.72120 * 18 17 16 20 20 C 1.40036 * 119.88631 * 0.57142 * 19 18 17 21 21 C 1.46856 * 120.11326 * 179.68065 * 20 19 18 22 22 O 1.21294 * 120.00463 * 0.02562 * 21 20 19 23 23 C 1.40041 * 119.77153 * 359.70380 * 20 19 18 24 24 C 1.37118 * 119.87995 * 359.97438 * 23 20 19 25 25 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 26 26 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 27 27 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 29 29 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 30 30 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 31 31 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 32 32 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 33 33 H 1.09002 * 109.47438 * 299.99718 * 15 13 12 34 34 H 1.08999 * 109.47522 * 60.00065 * 15 13 12 35 35 H 1.07989 * 119.94680 * 0.02562 * 18 17 16 36 36 H 1.08008 * 120.05642 * 180.27648 * 19 18 17 37 37 H 1.08002 * 119.99549 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.05789 * 179.97438 * 23 20 19 39 39 H 1.08004 * 119.93673 * 179.97438 * 24 23 20 40 40 H 1.09001 * 109.46843 * 293.57352 * 25 12 11 41 41 H 1.08997 * 109.71602 * 173.28846 * 25 12 11 42 42 H 1.08995 * 109.49643 * 301.32932 * 26 9 7 43 43 H 1.08996 * 109.49892 * 61.43126 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2922 -6.9546 -1.8205 15 6 -0.4779 -6.0481 -3.0912 16 8 -0.2938 -7.2316 -3.8706 17 6 -1.1093 -7.3966 -4.9422 18 6 -2.0733 -6.4373 -5.2334 19 6 -2.8963 -6.5965 -6.3186 20 6 -2.7727 -7.7331 -7.1273 21 6 -3.6562 -7.9121 -8.2867 22 8 -4.4943 -7.0744 -8.5456 23 6 -1.8042 -8.6988 -6.8262 24 6 -0.9819 -8.5268 -5.7425 25 6 -0.4199 -3.8913 -1.2280 26 6 0.3707 -2.5793 -1.2487 27 1 -0.4851 0.8400 -0.0004 28 1 0.6246 -2.5568 0.8906 29 1 2.8883 -3.5914 0.8783 30 1 2.8564 -3.6194 -0.9015 31 1 2.1755 -5.8175 -0.0644 32 1 0.9394 -5.0725 0.9795 33 1 -1.4925 -6.0290 -2.6933 34 1 -0.3172 -5.1716 -3.7189 35 1 -2.1707 -5.5633 -4.6067 36 1 -3.6417 -5.8488 -6.5466 37 1 -3.5595 -8.7896 -8.9088 38 1 -1.7052 -9.5773 -7.4465 39 1 -0.2349 -9.2711 -5.5093 40 1 -1.1142 -3.8866 -0.3877 41 1 -0.9750 -3.9982 -2.1599 42 1 -0.3218 -1.7377 -1.2603 43 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782056266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:58 Heat of formation + Delta-G solvation = -100.210059 kcal Electronic energy + Delta-G solvation = -25587.612494 eV Core-core repulsion = 21790.514245 eV Total energy + Delta-G solvation = -3797.098249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72284 -40.89992 -39.91833 -38.53680 -37.86560 -35.39495 -33.32727 -32.30066 -31.95037 -31.56361 -29.60897 -27.80266 -25.41631 -24.83902 -24.05320 -23.51325 -21.92866 -21.54136 -19.95692 -19.59636 -18.54337 -17.98855 -17.78016 -17.51544 -17.11988 -16.72965 -16.49550 -15.93491 -15.80027 -15.40990 -15.21847 -14.93894 -14.87727 -14.62944 -14.44767 -14.34235 -14.05129 -13.85487 -13.49088 -13.42229 -13.29125 -13.14098 -12.84067 -12.45356 -12.19518 -12.13488 -11.96631 -11.92518 -11.50487 -11.05807 -11.02541 -10.75182 -10.71887 -10.40449 -10.13701 -9.65200 -9.33869 -8.09344 -6.21490 -0.29754 0.35380 1.38158 1.39239 1.43514 1.45328 1.52369 1.52588 2.42590 2.43516 2.81336 3.17844 3.28459 3.45366 3.68497 3.81982 3.92002 3.96638 4.09229 4.22946 4.23755 4.30962 4.33753 4.45034 4.55024 4.56226 4.59022 4.68292 4.83515 4.95587 4.98746 5.15353 5.17189 5.21980 5.24493 5.35479 5.40228 5.47595 5.63351 5.64733 5.98328 6.12518 6.18619 6.35660 6.40008 6.56722 6.87822 7.00058 7.46334 8.94181 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002592 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.093697 B =10798.926535 C =12067.619112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.046 0.954 9 C 0.043 3.957 10 C -0.114 4.114 11 C 0.118 3.882 12 N -0.597 5.597 13 C 0.513 3.487 14 O -0.573 6.573 15 C 0.044 3.956 16 O -0.308 6.308 17 C 0.148 3.852 18 C -0.232 4.232 19 C -0.031 4.031 20 C -0.249 4.249 21 C 0.395 3.605 22 O -0.516 6.516 23 C -0.009 4.009 24 C -0.177 4.177 25 C 0.109 3.891 26 C -0.118 4.118 27 H 0.262 0.738 28 H 0.007 0.993 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -16.588 -12.572 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.152 4.152 11 C -0.004 4.004 12 N -0.330 5.330 13 C 0.301 3.699 14 O -0.453 6.453 15 C -0.034 4.034 16 O -0.220 6.220 17 C 0.101 3.899 18 C -0.251 4.251 19 C -0.049 4.049 20 C -0.250 4.250 21 C 0.258 3.742 22 O -0.393 6.393 23 C -0.027 4.027 24 C -0.196 4.196 25 C -0.012 4.012 26 C -0.156 4.156 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.200 0.800 39 H 0.164 0.836 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.778 -16.617 -12.543 21.895 hybrid contribution 0.625 1.663 0.572 1.867 sum -6.153 -14.953 -11.971 20.119 Atomic orbital electron populations 1.69924 1.06651 1.27061 1.51312 1.25581 0.95691 1.01759 0.94933 0.85701 0.79021 0.80488 0.77585 1.19843 1.20650 1.20753 1.21562 0.92878 0.92273 1.50395 0.93610 1.18632 0.93103 0.91808 0.93972 1.21864 0.98355 0.94239 1.00767 1.21630 0.91859 0.98333 0.88580 1.48195 1.36243 1.20763 1.27813 1.20429 0.84560 0.81781 0.83160 1.90675 1.42447 1.37243 1.74964 1.22684 1.00286 0.88344 0.92062 1.86075 1.55979 1.41843 1.38115 1.19788 0.88792 0.94990 0.86305 1.21325 0.99657 1.01692 1.02385 1.21259 0.95668 0.96329 0.91685 1.21167 1.03508 0.98268 1.02106 1.24598 0.77694 0.88995 0.82930 1.90539 1.33190 1.45931 1.69609 1.21454 0.89641 0.97848 0.93768 1.20627 1.04323 0.97602 0.97014 1.22056 0.90968 0.85072 1.03150 1.21814 0.99499 0.96188 0.98142 0.92909 0.97505 0.91666 0.93977 0.90140 0.90572 0.85870 0.86806 0.83632 0.85011 0.82809 0.79961 0.83581 0.90607 0.87903 0.89891 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.52 11.31 21.45 0.24 -48.28 16 2 C 0.02 1.02 5.30 84.65 0.45 1.47 16 3 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.53 -27.85 8.56 25.60 0.22 -27.64 16 8 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 9 C 0.04 1.98 2.07 -11.51 -0.02 1.96 16 10 C -0.11 -4.47 5.30 30.67 0.16 -4.31 16 11 C 0.12 4.01 6.43 86.36 0.56 4.56 16 12 N -0.60 -19.14 2.98 -818.82 -2.44 -21.58 16 13 C 0.51 16.35 7.78 87.66 0.68 17.04 16 14 O -0.57 -22.65 15.91 16.02 0.25 -22.40 16 15 C 0.04 1.03 3.56 71.24 0.25 1.28 16 16 O -0.31 -8.11 9.65 -70.77 -0.68 -8.79 16 17 C 0.15 3.13 6.70 22.67 0.15 3.29 16 18 C -0.23 -4.38 8.99 22.21 0.20 -4.18 16 19 C -0.03 -0.57 9.57 22.44 0.21 -0.36 16 20 C -0.25 -3.65 5.87 -20.15 -0.12 -3.76 16 21 C 0.40 4.99 11.44 70.08 0.80 5.79 16 22 O -0.52 -11.56 17.16 -3.07 -0.05 -11.61 16 23 C -0.01 -0.10 9.77 22.44 0.22 0.12 16 24 C -0.18 -2.94 9.95 22.21 0.22 -2.72 16 25 C 0.11 3.31 6.33 86.36 0.55 3.86 16 26 C -0.12 -4.82 5.15 30.67 0.16 -4.66 16 27 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 28 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.76 7.01 -2.39 -0.02 2.74 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.12 2.15 7.44 -2.39 -0.02 2.14 16 34 H 0.11 2.27 7.21 -2.39 -0.02 2.26 16 35 H 0.15 2.30 6.27 -2.92 -0.02 2.28 16 36 H 0.13 2.45 7.64 -2.91 -0.02 2.42 16 37 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.10 2.32 5.95 -2.39 -0.01 2.31 16 42 H 0.08 3.84 6.03 -2.39 -0.01 3.82 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.46 357.26 5.06 -65.40 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.02 Total: 11.56 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.69 Total: -8.27 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -2.20 Total: -69.86 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.48 Total: -42.80 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -70.46 5.06 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782056266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.814 kcal (2) G-P(sol) polarization free energy of solvation -70.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds