Wall clock time and date at job start Tue Mar 31 2020 11:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21286 * 120.00112 * 2 1 4 4 N 1.34775 * 120.00270 * 179.97438 * 2 1 3 5 5 C 1.39950 * 120.00367 * 185.72728 * 4 2 1 6 6 C 1.38999 * 120.00009 * 21.11661 * 5 4 2 7 7 C 1.38222 * 120.23545 * 179.97438 * 6 5 4 8 8 C 1.38007 * 120.22667 * 0.02562 * 7 6 5 9 9 C 1.39624 * 119.99107 * 0.02562 * 8 7 6 10 10 C 1.47746 * 120.11240 * 179.97438 * 9 8 7 11 11 O 1.21472 * 119.99485 * 173.62640 * 10 9 8 12 12 O 1.34710 * 120.00046 * 353.63566 * 10 9 8 13 13 C 1.45204 * 116.99672 * 185.13787 * 12 10 9 14 14 C 1.53002 * 109.46934 * 184.58189 * 13 12 10 15 15 C 1.50692 * 115.54889 * 179.36196 * 14 13 12 16 16 H 1.08002 * 119.99918 * 215.54893 * 15 14 13 17 17 C 1.37874 * 120.00349 * 35.54822 * 15 14 13 18 18 N 1.31515 * 120.00467 * 213.60885 * 17 15 14 19 19 Si 1.86800 * 119.99947 * 33.60861 * 17 15 14 20 20 H 1.48506 * 109.47093 * 271.09251 * 19 17 15 21 21 H 1.48501 * 109.46937 * 31.08938 * 19 17 15 22 22 H 1.48497 * 109.47609 * 151.09218 * 19 17 15 23 23 C 1.53000 * 117.49730 * 325.03471 * 14 13 12 24 24 C 1.52997 * 117.49560 * 33.69141 * 14 13 12 25 25 C 1.38583 * 119.99759 * 201.42481 * 5 4 2 26 26 C 1.50699 * 120.11517 * 359.97438 * 25 5 4 27 27 H 1.09000 * 109.47770 * 240.00341 * 1 2 3 28 28 H 1.09003 * 109.47339 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47318 * 119.99903 * 1 2 3 30 30 H 0.97003 * 119.99713 * 5.71851 * 4 2 1 31 31 H 1.08001 * 119.87701 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.88376 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.00051 * 180.02562 * 8 7 6 34 34 H 1.08999 * 109.46880 * 64.58410 * 13 12 10 35 35 H 1.08998 * 109.46940 * 304.58390 * 13 12 10 36 36 H 0.97001 * 120.00081 * 179.97438 * 18 17 15 37 37 H 1.09005 * 117.49757 * 215.00097 * 23 14 13 38 38 H 1.08997 * 117.50349 * 0.02562 * 23 14 13 39 39 H 1.08997 * 117.50460 * 359.97438 * 24 14 13 40 40 H 1.09004 * 117.49739 * 144.97714 * 24 14 13 41 41 H 1.09001 * 109.47197 * 262.04499 * 26 25 5 42 42 H 1.09001 * 109.47223 * 22.04426 * 26 25 5 43 43 H 1.08998 * 109.47171 * 142.04280 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5751 -1.1702 0.1215 6 6 4.2276 -0.0715 0.6686 7 6 5.6044 -0.0695 0.7908 8 6 6.3409 -1.1582 0.3700 9 6 5.6952 -2.2663 -0.1820 10 6 6.4811 -3.4330 -0.6339 11 8 5.9133 -4.4404 -1.0057 12 8 7.8271 -3.3795 -0.6335 13 6 8.5321 -4.5169 -1.1971 14 6 10.0385 -4.3286 -1.0064 15 6 10.9045 -5.4444 -1.5317 16 1 11.8065 -5.7211 -1.0060 17 6 10.5455 -6.1121 -2.6832 18 7 10.8190 -7.3919 -2.8139 19 14 9.6705 -5.1991 -4.0581 20 1 8.2034 -5.2572 -3.8356 21 1 10.1134 -3.7817 -4.0711 22 1 9.9991 -5.8323 -5.3605 23 6 10.5895 -2.9041 -1.0971 24 6 10.5057 -3.6078 0.2597 25 6 4.3057 -2.2658 -0.3101 26 6 3.6014 -3.4557 -0.9095 27 1 -0.3635 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.6994 -2.0052 -0.0828 31 1 3.6566 0.7832 1.0001 32 1 6.1055 0.7870 1.2172 33 1 7.4165 -1.1529 0.4676 34 1 8.3072 -4.5930 -2.2609 35 1 8.2131 -5.4286 -0.6921 36 1 10.5661 -7.8617 -3.6239 37 1 11.5784 -2.7740 -1.5367 38 1 9.8788 -2.1011 -1.2921 39 1 9.7399 -3.2674 0.9566 40 1 11.4393 -3.9409 0.7130 41 1 3.4761 -4.2254 -0.1480 42 1 2.6234 -3.1497 -1.2812 43 1 4.1951 -3.8525 -1.7330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785886471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:10 Heat of formation + Delta-G solvation = -55.060903 kcal Electronic energy + Delta-G solvation = -26241.958374 eV Core-core repulsion = 22446.817940 eV Total energy + Delta-G solvation = -3795.140435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12825 -40.09398 -38.53815 -37.02891 -35.39466 -35.17424 -32.60628 -32.36967 -31.45323 -29.39364 -27.57443 -27.04030 -25.39297 -24.00655 -22.11899 -21.35952 -21.33617 -20.18709 -19.12601 -18.45456 -17.49540 -16.81960 -16.53634 -16.17065 -15.95000 -15.80184 -15.42527 -14.82698 -14.61339 -14.34832 -13.99524 -13.85886 -13.54633 -13.12097 -13.01009 -12.94595 -12.83062 -12.58031 -12.44039 -12.28564 -12.09145 -11.73541 -11.42923 -11.06631 -10.96266 -10.85463 -10.41194 -10.32301 -10.24813 -10.15499 -9.88535 -9.60815 -9.17812 -8.98560 -8.61264 -8.27430 -8.22457 -6.39993 -4.13794 0.69711 1.04180 2.14398 2.58089 2.76768 3.11246 3.17583 3.33247 3.42456 3.70503 4.21040 4.30128 4.59702 4.66894 4.71986 4.74035 4.83813 4.91791 4.97748 5.17308 5.25692 5.30552 5.36716 5.49876 5.61414 5.66468 5.77226 5.95000 5.98496 6.04991 6.09494 6.11330 6.24777 6.31749 6.34410 6.60819 6.63400 6.73710 6.78405 6.96982 7.03209 7.05693 7.25720 7.64169 7.64617 8.10668 8.38113 8.79861 9.35221 10.71331 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003150 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.795899 B = 8887.662264 C = 9543.226172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.525 6.525 4 N -0.667 5.667 5 C 0.127 3.873 6 C -0.103 4.103 7 C -0.119 4.119 8 C -0.073 4.073 9 C -0.103 4.103 10 C 0.500 3.500 11 O -0.505 6.505 12 O -0.349 6.349 13 C 0.094 3.906 14 C 0.014 3.986 15 C -0.506 4.506 16 H 0.083 0.917 17 C 0.093 3.907 18 N -0.852 5.852 19 Si 0.846 3.154 20 H -0.270 1.270 21 H -0.256 1.256 22 H -0.287 1.287 23 C -0.204 4.204 24 C -0.180 4.180 25 C -0.054 4.054 26 C -0.121 4.121 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.413 0.587 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.269 0.731 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.455 13.158 6.602 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.401 6.401 4 N -0.312 5.312 5 C 0.033 3.967 6 C -0.123 4.123 7 C -0.138 4.138 8 C -0.092 4.092 9 C -0.104 4.104 10 C 0.345 3.655 11 O -0.395 6.395 12 O -0.265 6.265 13 C 0.022 3.978 14 C 0.013 3.987 15 C -0.541 4.541 16 H 0.100 0.900 17 C -0.115 4.115 18 N -0.485 5.485 19 Si 0.672 3.328 20 H -0.197 1.197 21 H -0.180 1.180 22 H -0.213 1.213 23 C -0.242 4.242 24 C -0.217 4.217 25 C -0.056 4.056 26 C -0.177 4.177 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.250 0.750 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.215 13.392 6.384 25.075 hybrid contribution -0.625 -0.209 -0.966 1.170 sum -20.841 13.183 5.418 25.249 Atomic orbital electron populations 1.21940 0.90482 1.06147 1.04732 1.21036 0.91001 0.82978 0.75181 1.90671 1.70225 1.31488 1.47686 1.43620 1.05303 1.10232 1.72049 1.17392 0.82680 0.95765 1.00889 1.21776 0.95041 0.98393 0.97061 1.21071 0.93383 0.98580 1.00749 1.21550 1.01195 0.91522 0.94950 1.18832 0.91769 0.94363 1.05471 1.21038 0.82128 0.86904 0.75415 1.90771 1.71499 1.32591 1.44673 1.86496 1.18296 1.47551 1.74149 1.23358 0.91372 0.85283 0.97832 1.19273 0.88351 0.92277 0.98840 1.20043 1.09329 1.14762 1.09994 0.89951 1.24907 0.94518 0.93496 0.98571 1.70196 1.44308 1.07037 1.26923 0.87500 0.79968 0.82753 0.82548 1.19741 1.18005 1.21305 1.23142 1.01940 0.98084 1.01047 1.22732 1.01816 1.06382 0.90804 1.19633 0.91973 0.96154 0.97875 1.21023 0.99109 0.94815 1.02727 0.88872 0.88400 0.88978 0.74962 0.82777 0.84797 0.83983 0.91300 0.90565 0.92135 0.89938 0.90961 0.90492 0.90126 0.90162 0.92833 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.32 36.00 0.37 -0.30 16 2 C 0.51 4.36 7.77 -10.99 -0.09 4.27 16 3 O -0.52 -6.57 14.05 5.55 0.08 -6.49 16 4 N -0.67 -5.61 5.05 -9.90 -0.05 -5.66 16 5 C 0.13 1.49 6.46 -83.74 -0.54 0.95 16 6 C -0.10 -1.23 8.76 -39.31 -0.34 -1.58 16 7 C -0.12 -1.37 10.02 -39.67 -0.40 -1.77 16 8 C -0.07 -0.98 9.61 -39.15 -0.38 -1.35 16 9 C -0.10 -1.56 5.87 -105.01 -0.62 -2.17 16 10 C 0.50 9.29 7.82 34.62 0.27 9.56 16 11 O -0.50 -10.20 13.09 -19.24 -0.25 -10.45 16 12 O -0.35 -7.00 7.74 -40.52 -0.31 -7.31 16 13 C 0.09 2.16 5.00 37.16 0.19 2.35 16 14 C 0.01 0.33 1.71 -155.66 -0.27 0.06 16 15 C -0.51 -13.98 9.36 -34.45 -0.32 -14.31 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 17 C 0.09 2.59 5.16 -17.82 -0.09 2.50 16 18 N -0.85 -24.88 13.96 55.43 0.77 -24.11 16 19 Si 0.85 20.95 25.77 -169.99 -4.38 16.57 16 20 H -0.27 -6.64 6.16 56.52 0.35 -6.29 16 21 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 C -0.20 -4.38 9.65 -26.70 -0.26 -4.64 16 24 C -0.18 -3.76 9.64 -26.70 -0.26 -4.02 16 25 C -0.05 -0.71 5.93 -104.01 -0.62 -1.32 16 26 C -0.12 -1.42 8.28 36.01 0.30 -1.13 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.10 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.41 2.26 7.08 -40.82 -0.29 1.97 16 31 H 0.15 1.86 5.51 -52.49 -0.29 1.57 16 32 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.14 1.82 7.62 -52.48 -0.40 1.42 16 34 H 0.07 1.68 3.58 -51.93 -0.19 1.50 16 35 H 0.08 1.81 7.98 -51.93 -0.41 1.40 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 39 H 0.08 1.47 7.63 -51.93 -0.40 1.08 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.45 6.51 -51.93 -0.34 0.12 16 43 H 0.10 1.44 6.00 -51.93 -0.31 1.13 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -32.70 354.26 -7.45 -40.15 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.59 Total: 4.86 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.05 Total: -12.90 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.72 Total: -29.77 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.49 Total: -24.25 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.38 Total: 16.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.70 -7.45 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785886471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.910 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds