Wall clock time and date at job start Tue Mar 31 2020 11:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21286 * 120.00112 * 2 1 4 4 N 1.34775 * 120.00270 * 179.97438 * 2 1 3 5 5 C 1.39950 * 120.00367 * 185.72728 * 4 2 1 6 6 C 1.38999 * 120.00009 * 21.11661 * 5 4 2 7 7 C 1.38222 * 120.23545 * 179.97438 * 6 5 4 8 8 C 1.38007 * 120.22667 * 0.02562 * 7 6 5 9 9 C 1.39624 * 119.99107 * 0.02562 * 8 7 6 10 10 C 1.47746 * 120.11240 * 179.97438 * 9 8 7 11 11 O 1.21472 * 119.99485 * 173.62640 * 10 9 8 12 12 O 1.34710 * 120.00046 * 353.63566 * 10 9 8 13 13 C 1.45204 * 116.99672 * 185.13787 * 12 10 9 14 14 C 1.53002 * 109.46934 * 184.58189 * 13 12 10 15 15 C 1.50692 * 115.54889 * 179.36196 * 14 13 12 16 16 H 1.08002 * 119.99918 * 215.54893 * 15 14 13 17 17 C 1.37874 * 120.00349 * 35.54822 * 15 14 13 18 18 N 1.31515 * 120.00467 * 213.60885 * 17 15 14 19 19 Si 1.86800 * 119.99947 * 33.60861 * 17 15 14 20 20 H 1.48506 * 109.47093 * 271.09251 * 19 17 15 21 21 H 1.48501 * 109.46937 * 31.08938 * 19 17 15 22 22 H 1.48497 * 109.47609 * 151.09218 * 19 17 15 23 23 C 1.53000 * 117.49730 * 325.03471 * 14 13 12 24 24 C 1.52997 * 117.49560 * 33.69141 * 14 13 12 25 25 C 1.38583 * 119.99759 * 201.42481 * 5 4 2 26 26 C 1.50699 * 120.11517 * 359.97438 * 25 5 4 27 27 H 1.09000 * 109.47770 * 240.00341 * 1 2 3 28 28 H 1.09003 * 109.47339 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47318 * 119.99903 * 1 2 3 30 30 H 0.97003 * 119.99713 * 5.71851 * 4 2 1 31 31 H 1.08001 * 119.87701 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.88376 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.00051 * 180.02562 * 8 7 6 34 34 H 1.08999 * 109.46880 * 64.58410 * 13 12 10 35 35 H 1.08998 * 109.46940 * 304.58390 * 13 12 10 36 36 H 0.97001 * 120.00081 * 179.97438 * 18 17 15 37 37 H 1.09005 * 117.49757 * 215.00097 * 23 14 13 38 38 H 1.08997 * 117.50349 * 0.02562 * 23 14 13 39 39 H 1.08997 * 117.50460 * 359.97438 * 24 14 13 40 40 H 1.09004 * 117.49739 * 144.97714 * 24 14 13 41 41 H 1.09001 * 109.47197 * 262.04499 * 26 25 5 42 42 H 1.09001 * 109.47223 * 22.04426 * 26 25 5 43 43 H 1.08998 * 109.47171 * 142.04280 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5751 -1.1702 0.1215 6 6 4.2276 -0.0715 0.6686 7 6 5.6044 -0.0695 0.7908 8 6 6.3409 -1.1582 0.3700 9 6 5.6952 -2.2663 -0.1820 10 6 6.4811 -3.4330 -0.6339 11 8 5.9133 -4.4404 -1.0057 12 8 7.8271 -3.3795 -0.6335 13 6 8.5321 -4.5169 -1.1971 14 6 10.0385 -4.3286 -1.0064 15 6 10.9045 -5.4444 -1.5317 16 1 11.8065 -5.7211 -1.0060 17 6 10.5455 -6.1121 -2.6832 18 7 10.8190 -7.3919 -2.8139 19 14 9.6705 -5.1991 -4.0581 20 1 8.2034 -5.2572 -3.8356 21 1 10.1134 -3.7817 -4.0711 22 1 9.9991 -5.8323 -5.3605 23 6 10.5895 -2.9041 -1.0971 24 6 10.5057 -3.6078 0.2597 25 6 4.3057 -2.2658 -0.3101 26 6 3.6014 -3.4557 -0.9095 27 1 -0.3635 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.6994 -2.0052 -0.0828 31 1 3.6566 0.7832 1.0001 32 1 6.1055 0.7870 1.2172 33 1 7.4165 -1.1529 0.4676 34 1 8.3072 -4.5930 -2.2609 35 1 8.2131 -5.4286 -0.6921 36 1 10.5661 -7.8617 -3.6239 37 1 11.5784 -2.7740 -1.5367 38 1 9.8788 -2.1011 -1.2921 39 1 9.7399 -3.2674 0.9566 40 1 11.4393 -3.9409 0.7130 41 1 3.4761 -4.2254 -0.1480 42 1 2.6234 -3.1497 -1.2812 43 1 4.1951 -3.8525 -1.7330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785886471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:10 Heat of formation + Delta-G solvation = -74.554096 kcal Electronic energy + Delta-G solvation = -26242.803662 eV Core-core repulsion = 22446.817940 eV Total energy + Delta-G solvation = -3795.985723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10400 -41.34620 -39.61784 -38.64818 -36.97153 -36.06184 -34.48160 -33.59335 -32.20692 -30.17418 -29.19888 -28.09389 -27.25403 -25.16062 -23.14936 -23.05674 -22.30213 -21.24751 -21.05076 -19.52404 -18.74273 -18.20042 -17.95761 -17.58108 -17.00411 -16.83227 -16.69179 -16.44364 -15.70441 -15.52465 -15.20643 -15.01579 -14.84646 -14.59440 -14.36519 -14.32679 -13.57615 -13.49269 -13.43030 -13.28441 -13.19860 -13.02829 -12.92767 -12.86834 -12.37066 -12.25942 -12.08142 -12.05034 -11.72784 -11.63848 -11.29351 -11.04720 -10.83754 -10.50411 -10.26487 -9.98328 -9.15564 -8.55001 -6.30641 -0.40890 0.12982 1.19347 1.28440 1.32960 1.42956 1.51902 1.62630 2.05143 2.23678 2.66414 2.68050 3.36694 3.49931 3.64593 3.73771 3.89897 3.98758 3.99987 4.15385 4.23086 4.26929 4.36064 4.49476 4.54304 4.61138 4.64885 4.67004 4.67736 4.81071 4.95525 5.01502 5.05410 5.10434 5.11113 5.25583 5.27732 5.29986 5.36011 5.51671 5.56551 5.61948 5.83994 6.22796 6.34594 6.60194 6.64431 7.01395 7.19475 8.60884 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003150 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.795899 B = 8887.662264 C = 9543.226172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.568 6.568 4 N -0.659 5.659 5 C 0.130 3.870 6 C -0.105 4.105 7 C -0.111 4.111 8 C -0.078 4.078 9 C -0.124 4.124 10 C 0.496 3.504 11 O -0.528 6.528 12 O -0.344 6.344 13 C 0.107 3.893 14 C -0.021 4.021 15 C -0.516 4.516 16 H 0.049 0.951 17 C 0.049 3.951 18 N -0.897 5.897 19 Si 0.902 3.098 20 H -0.270 1.270 21 H -0.245 1.245 22 H -0.281 1.281 23 C -0.186 4.186 24 C -0.161 4.161 25 C -0.060 4.060 26 C -0.117 4.117 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.428 0.572 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.273 0.727 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.052 15.715 7.055 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.447 6.447 4 N -0.305 5.305 5 C 0.035 3.965 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.097 4.097 9 C -0.126 4.126 10 C 0.343 3.657 11 O -0.419 6.419 12 O -0.261 6.261 13 C 0.034 3.966 14 C -0.022 4.022 15 C -0.552 4.552 16 H 0.067 0.933 17 C -0.155 4.155 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.168 1.168 22 H -0.207 1.207 23 C -0.223 4.223 24 C -0.198 4.198 25 C -0.063 4.063 26 C -0.173 4.173 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.268 0.732 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.843 15.949 6.841 28.687 hybrid contribution 0.113 -0.953 -0.992 1.381 sum -22.730 14.996 5.848 27.852 Atomic orbital electron populations 1.21985 0.86465 1.06898 1.06974 1.21941 0.92762 0.82036 0.73551 1.90651 1.71417 1.32938 1.49657 1.43677 1.03988 1.11314 1.71511 1.17456 0.84284 0.94905 0.99865 1.21983 0.95432 0.98450 0.96685 1.21343 0.93240 0.98687 0.99669 1.21633 1.01540 0.91456 0.95038 1.18787 0.92374 0.93779 1.07675 1.21720 0.81435 0.87781 0.74769 1.90767 1.71540 1.33791 1.45847 1.86473 1.19413 1.45960 1.74219 1.22858 0.91328 0.85657 0.96797 1.19153 0.88368 0.92732 1.01909 1.20186 1.08968 1.16056 1.09964 0.93314 1.25555 0.95673 0.93888 1.00407 1.70261 1.46741 1.08386 1.27793 0.86599 0.78876 0.81977 0.79867 1.19696 1.16827 1.20683 1.23114 1.01971 0.96371 1.00861 1.22786 1.02132 1.04340 0.90510 1.19743 0.91414 0.97036 0.98078 1.20972 1.00206 0.94479 1.01667 0.86403 0.88463 0.86683 0.73189 0.82569 0.82047 0.83610 0.92770 0.92489 0.91792 0.90014 0.88958 0.88297 0.90085 0.90008 0.89387 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 10.32 71.23 0.74 0.07 16 2 C 0.51 7.26 7.77 87.65 0.68 7.94 16 3 O -0.57 -13.15 14.05 -3.05 -0.04 -13.19 16 4 N -0.66 -9.20 5.05 -303.62 -1.53 -10.73 16 5 C 0.13 2.77 6.46 38.11 0.25 3.01 16 6 C -0.11 -2.30 8.76 22.45 0.20 -2.10 16 7 C -0.11 -2.28 10.02 22.21 0.22 -2.06 16 8 C -0.08 -1.93 9.61 22.55 0.22 -1.71 16 9 C -0.12 -3.66 5.87 -20.11 -0.12 -3.78 16 10 C 0.50 18.35 7.82 70.34 0.55 18.90 16 11 O -0.53 -21.66 13.09 19.93 0.26 -21.40 16 12 O -0.34 -13.59 7.74 -56.20 -0.43 -14.03 16 13 C 0.11 4.96 5.00 71.98 0.36 5.32 16 14 C -0.02 -0.98 1.71 -52.93 -0.09 -1.07 16 15 C -0.52 -29.28 9.36 25.60 0.24 -29.04 16 16 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 17 C 0.05 2.79 5.16 84.65 0.44 3.22 16 18 N -0.90 -54.13 13.96 21.45 0.30 -53.83 16 19 Si 0.90 43.90 25.77 68.60 1.77 45.67 16 20 H -0.27 -13.05 6.16 99.48 0.61 -12.44 16 21 H -0.25 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 C -0.19 -7.61 9.65 30.62 0.30 -7.32 16 24 C -0.16 -6.48 9.64 30.62 0.30 -6.18 16 25 C -0.06 -1.49 5.93 -19.47 -0.12 -1.61 16 26 C -0.12 -2.62 8.28 71.24 0.59 -2.03 16 27 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.10 0.48 8.12 -2.39 -0.02 0.46 16 29 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.43 3.21 7.08 -92.71 -0.66 2.55 16 31 H 0.16 3.45 5.51 -2.91 -0.02 3.44 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 3.44 7.62 -2.91 -0.02 3.42 16 34 H 0.05 2.66 3.58 -2.39 -0.01 2.65 16 35 H 0.06 2.80 7.98 -2.39 -0.02 2.78 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 38 H 0.09 3.43 7.68 -2.39 -0.02 3.41 16 39 H 0.10 3.55 7.63 -2.39 -0.02 3.54 16 40 H 0.08 3.25 8.14 -2.38 -0.02 3.24 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 1.27 6.51 -2.39 -0.02 1.26 16 43 H 0.07 2.01 6.00 -2.39 -0.01 2.00 16 Total: -1.00 -73.36 354.26 5.36 -67.99 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.30 Total: 17.94 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.74 Total: -18.43 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -1.23 Total: -64.56 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.22 Total: -48.61 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.77 Total: 45.67 kcal Total: -73.36 5.36 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785886471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.561 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds