Wall clock time and date at job start Tue Mar 31 2020 11:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46909 * 180.02562 * 14 12 11 16 16 O 1.42904 * 109.47202 * 180.02562 * 15 14 12 17 17 C 1.35906 * 117.00090 * 180.02562 * 16 15 14 18 18 C 1.38892 * 119.97382 * 359.71483 * 17 16 15 19 19 C 1.38294 * 120.29477 * 179.76378 * 18 17 16 20 20 C 1.37927 * 120.23702 * 0.51999 * 19 18 17 21 21 C 1.39842 * 119.93742 * 359.74060 * 20 19 18 22 22 C 1.47183 * 120.14647 * 180.02562 * 21 20 19 23 23 O 1.21254 * 119.99881 * 359.97438 * 22 21 20 24 24 C 1.38391 * 119.97008 * 179.97438 * 17 16 15 25 25 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 26 26 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 27 27 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 28 28 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 29 29 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 30 30 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 31 31 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 32 32 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 33 33 H 1.09001 * 109.47343 * 299.99642 * 15 14 12 34 34 H 1.08995 * 109.47684 * 60.00162 * 15 14 12 35 35 H 1.08004 * 119.85240 * 0.02562 * 18 17 16 36 36 H 1.08007 * 119.87874 * 180.26063 * 19 18 17 37 37 H 1.07998 * 120.03365 * 179.76636 * 20 19 18 38 38 H 1.07999 * 119.99695 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.11899 * 359.95508 * 24 17 16 40 40 H 1.09003 * 117.49648 * 359.97438 * 25 9 7 41 41 H 1.08991 * 117.50066 * 145.01997 * 25 9 7 42 42 H 1.08996 * 117.49909 * 214.98045 * 26 9 7 43 43 H 1.09006 * 117.50020 * 359.97109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0422 -4.6345 5.6167 16 8 4.2510 -4.9205 6.3234 17 6 4.1269 -5.4378 7.5740 18 6 2.8655 -5.6596 8.1112 19 6 2.7316 -6.1903 9.3813 20 6 3.8503 -6.4936 10.1288 21 6 5.1251 -6.2693 9.5996 22 6 6.3221 -6.5918 10.3931 23 8 6.2040 -7.0527 11.5084 24 6 5.2577 -5.7382 8.3131 25 6 1.5730 -3.5796 -0.9302 26 6 0.2452 -2.8210 -1.0000 27 1 -0.4850 0.8369 -0.0732 28 1 0.3751 -2.1632 2.0411 29 1 0.3015 -3.8512 1.4812 30 1 3.0164 -3.0733 1.8316 31 1 3.9649 -4.7929 3.6769 32 1 3.9584 -3.1474 4.3556 33 1 2.4574 -3.9059 6.1781 34 1 2.4643 -5.5511 5.4990 35 1 1.9852 -5.4204 7.5329 36 1 1.7474 -6.3639 9.7908 37 1 3.7419 -6.9044 11.1217 38 1 7.3055 -6.4180 9.9819 39 1 6.2391 -5.5629 7.8977 40 1 2.3246 -3.3491 -1.6853 41 1 1.5428 -4.6172 -0.5978 42 1 -0.6578 -3.3599 -0.7135 43 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797768149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:31 Heat of formation + Delta-G solvation = -66.565520 kcal Electronic energy + Delta-G solvation = -24683.352614 eV Core-core repulsion = 20887.713302 eV Total energy + Delta-G solvation = -3795.639312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60791 -39.52620 -39.05665 -37.35693 -36.74793 -33.44331 -32.30919 -32.02142 -31.74048 -29.92581 -26.80708 -25.67872 -25.15143 -23.45732 -22.94569 -21.24239 -20.92100 -19.87604 -19.32746 -18.43287 -16.92131 -16.74163 -16.52343 -16.36977 -16.08845 -15.69108 -15.21946 -14.98522 -14.75912 -14.67409 -14.51780 -14.10057 -13.83781 -13.58065 -13.26932 -12.94155 -12.66790 -12.33690 -12.22163 -11.99194 -11.74807 -11.62246 -11.25303 -11.05942 -11.00944 -10.92527 -10.59262 -10.30661 -10.21297 -9.74155 -9.45229 -9.41895 -9.12586 -8.57581 -8.56470 -8.38171 -8.19567 -6.14213 -4.24565 0.24379 1.07016 2.08006 2.71646 2.99751 3.20607 3.29238 3.30006 3.44908 3.79561 3.94008 4.29194 4.39024 4.61949 4.68616 4.82617 4.85133 4.94474 5.02956 5.07468 5.12390 5.14724 5.27277 5.44050 5.55669 5.63468 5.65727 5.83721 5.94915 5.96484 6.07633 6.26005 6.29936 6.38940 6.47030 6.63471 6.76973 6.99093 7.05283 7.09334 7.13561 7.30975 7.46089 7.74283 8.11752 8.26096 8.67293 8.77332 9.43049 10.92788 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.002067 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.301224 B =13544.937952 C =14044.827200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.163 3.837 11 N -0.698 5.698 12 C 0.509 3.491 13 O -0.561 6.561 14 C -0.141 4.141 15 C 0.076 3.924 16 O -0.315 6.315 17 C 0.123 3.877 18 C -0.173 4.173 19 C -0.093 4.093 20 C -0.101 4.101 21 C -0.159 4.159 22 C 0.387 3.613 23 O -0.460 6.460 24 C -0.104 4.104 25 C -0.210 4.210 26 C -0.142 4.142 27 H 0.262 0.738 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.403 0.597 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -10.987 13.769 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.021 3.979 10 C 0.040 3.960 11 N -0.347 5.347 12 C 0.294 3.706 13 O -0.441 6.441 14 C -0.181 4.181 15 C 0.000 4.000 16 O -0.229 6.229 17 C 0.077 3.923 18 C -0.192 4.192 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.160 4.160 22 C 0.245 3.755 23 O -0.333 6.333 24 C -0.123 4.123 25 C -0.248 4.248 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.238 0.762 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.800 -11.191 14.661 20.435 hybrid contribution 0.416 1.191 -0.548 1.376 sum 9.216 -9.999 14.112 19.598 Atomic orbital electron populations 1.69988 1.05897 1.26955 1.48164 1.25004 0.94845 0.99040 0.94280 0.86615 0.79914 0.83474 0.78156 1.20660 1.21167 1.19762 1.20340 0.92631 0.88513 1.52365 0.92147 1.19057 0.99540 0.93412 0.85887 1.21037 0.83943 0.98017 0.93042 1.45968 1.11625 1.62186 1.14896 1.20110 0.90056 0.78141 0.82320 1.90680 1.31034 1.54433 1.67973 1.21474 0.97875 1.04085 0.94640 1.22511 0.84537 1.01162 0.91749 1.86000 1.34233 1.77623 1.25058 1.18859 0.93633 0.94729 0.85030 1.21707 0.97037 1.02836 0.97616 1.20989 0.99102 0.97456 0.93571 1.21327 0.91334 0.99025 1.00307 1.20710 0.96157 1.03733 0.95437 1.24083 0.93207 0.72581 0.85629 1.90527 1.90228 1.32183 1.20333 1.20614 0.97946 1.00746 0.92994 1.23021 1.00753 0.95527 1.05467 1.22469 0.90790 1.01306 1.03422 0.92816 0.91323 0.94047 0.76228 0.87971 0.87767 0.90863 0.90938 0.84430 0.85047 0.84952 0.87522 0.84114 0.90336 0.91720 0.91808 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.60 12.65 55.43 0.70 -22.90 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.50 -12.37 8.59 -34.44 -0.30 -12.67 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 10 C 0.16 3.48 5.50 -4.04 -0.02 3.45 16 11 N -0.70 -12.33 5.48 -60.29 -0.33 -12.67 16 12 C 0.51 8.36 7.83 -10.98 -0.09 8.27 16 13 O -0.56 -11.14 15.98 5.55 0.09 -11.05 16 14 C -0.14 -1.64 6.07 -27.88 -0.17 -1.81 16 15 C 0.08 0.87 4.03 37.16 0.15 1.02 16 16 O -0.32 -3.48 10.13 -19.44 -0.20 -3.68 16 17 C 0.12 1.26 6.68 -39.28 -0.26 1.00 16 18 C -0.17 -1.69 9.04 -39.32 -0.36 -2.05 16 19 C -0.09 -0.81 10.02 -39.67 -0.40 -1.21 16 20 C -0.10 -0.91 9.59 -39.10 -0.38 -1.29 16 21 C -0.16 -1.35 5.87 -105.08 -0.62 -1.97 16 22 C 0.39 2.86 11.46 34.36 0.39 3.25 16 23 O -0.46 -5.08 17.16 5.58 0.10 -4.98 16 24 C -0.10 -0.88 9.73 -38.94 -0.38 -1.26 16 25 C -0.21 -4.20 9.96 -26.69 -0.27 -4.46 16 26 C -0.14 -3.14 9.14 -26.70 -0.24 -3.39 16 27 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 28 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 29 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.40 6.44 8.33 -40.82 -0.34 6.10 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 34 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 35 H 0.14 1.30 6.28 -52.48 -0.33 0.97 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.13 1.12 7.64 -52.49 -0.40 0.72 16 38 H 0.11 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -30.53 375.55 -8.31 -38.84 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.05 Total: 6.91 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -3.25 Total: -11.08 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.37 Total: -35.56 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.01 Total: -19.72 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.53 -8.31 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797768149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.724 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds