Wall clock time and date at job start Tue Mar 31 2020 11:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46909 * 180.02562 * 14 12 11 16 16 O 1.42904 * 109.47202 * 180.02562 * 15 14 12 17 17 C 1.35906 * 117.00090 * 180.02562 * 16 15 14 18 18 C 1.38892 * 119.97382 * 359.71483 * 17 16 15 19 19 C 1.38294 * 120.29477 * 179.76378 * 18 17 16 20 20 C 1.37927 * 120.23702 * 0.51999 * 19 18 17 21 21 C 1.39842 * 119.93742 * 359.74060 * 20 19 18 22 22 C 1.47183 * 120.14647 * 180.02562 * 21 20 19 23 23 O 1.21254 * 119.99881 * 359.97438 * 22 21 20 24 24 C 1.38391 * 119.97008 * 179.97438 * 17 16 15 25 25 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 26 26 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 27 27 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 28 28 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 29 29 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 30 30 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 31 31 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 32 32 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 33 33 H 1.09001 * 109.47343 * 299.99642 * 15 14 12 34 34 H 1.08995 * 109.47684 * 60.00162 * 15 14 12 35 35 H 1.08004 * 119.85240 * 0.02562 * 18 17 16 36 36 H 1.08007 * 119.87874 * 180.26063 * 19 18 17 37 37 H 1.07998 * 120.03365 * 179.76636 * 20 19 18 38 38 H 1.07999 * 119.99695 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.11899 * 359.95508 * 24 17 16 40 40 H 1.09003 * 117.49648 * 359.97438 * 25 9 7 41 41 H 1.08991 * 117.50066 * 145.01997 * 25 9 7 42 42 H 1.08996 * 117.49909 * 214.98045 * 26 9 7 43 43 H 1.09006 * 117.50020 * 359.97109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0422 -4.6345 5.6167 16 8 4.2510 -4.9205 6.3234 17 6 4.1269 -5.4378 7.5740 18 6 2.8655 -5.6596 8.1112 19 6 2.7316 -6.1903 9.3813 20 6 3.8503 -6.4936 10.1288 21 6 5.1251 -6.2693 9.5996 22 6 6.3221 -6.5918 10.3931 23 8 6.2040 -7.0527 11.5084 24 6 5.2577 -5.7382 8.3131 25 6 1.5730 -3.5796 -0.9302 26 6 0.2452 -2.8210 -1.0000 27 1 -0.4850 0.8369 -0.0732 28 1 0.3751 -2.1632 2.0411 29 1 0.3015 -3.8512 1.4812 30 1 3.0164 -3.0733 1.8316 31 1 3.9649 -4.7929 3.6769 32 1 3.9584 -3.1474 4.3556 33 1 2.4574 -3.9059 6.1781 34 1 2.4643 -5.5511 5.4990 35 1 1.9852 -5.4204 7.5329 36 1 1.7474 -6.3639 9.7908 37 1 3.7419 -6.9044 11.1217 38 1 7.3055 -6.4180 9.9819 39 1 6.2391 -5.5629 7.8977 40 1 2.3246 -3.3491 -1.6853 41 1 1.5428 -4.6172 -0.5978 42 1 -0.6578 -3.3599 -0.7135 43 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797768149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:30 Heat of formation + Delta-G solvation = -84.629431 kcal Electronic energy + Delta-G solvation = -24684.135924 eV Core-core repulsion = 20887.713302 eV Total energy + Delta-G solvation = -3796.422622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37040 -40.68791 -39.96193 -38.51919 -38.03049 -34.97503 -33.95484 -33.23175 -32.44986 -30.69874 -28.33004 -27.28882 -26.16496 -24.44416 -23.63583 -22.92480 -21.66422 -21.37817 -20.91322 -19.23736 -18.28376 -17.73479 -17.47758 -17.43645 -16.95052 -16.70279 -16.55330 -16.49540 -16.12265 -15.63845 -15.44500 -15.27683 -14.82146 -14.68758 -14.33767 -14.20704 -14.12617 -13.58474 -13.44565 -13.10024 -12.94813 -12.85202 -12.78427 -12.70912 -12.35789 -12.02833 -12.00926 -11.78658 -11.41324 -10.99029 -10.94310 -10.83086 -10.43594 -10.09260 -10.04863 -9.84779 -9.30386 -8.08950 -6.23109 -0.40981 0.37586 1.42929 1.46276 1.46757 1.53695 1.67962 1.78930 2.42499 2.64592 2.77675 3.19250 3.32843 3.51970 3.63632 3.81824 3.95503 3.96353 4.07723 4.17021 4.24193 4.26066 4.42373 4.47159 4.53620 4.55420 4.66034 4.72013 4.76849 4.77860 4.94710 5.00858 5.04469 5.14702 5.29169 5.29766 5.40053 5.56344 5.59376 5.60067 5.70662 5.79149 6.29894 6.37009 6.44712 6.73534 6.85561 7.34204 7.46985 8.97816 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.002067 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.301224 B =13544.937952 C =14044.827200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.261 1.261 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.000 4.000 10 C 0.179 3.821 11 N -0.696 5.696 12 C 0.508 3.492 13 O -0.599 6.599 14 C -0.127 4.127 15 C 0.080 3.920 16 O -0.316 6.316 17 C 0.101 3.899 18 C -0.185 4.185 19 C -0.098 4.098 20 C -0.112 4.112 21 C -0.166 4.166 22 C 0.397 3.603 23 O -0.501 6.501 24 C -0.095 4.095 25 C -0.175 4.175 26 C -0.156 4.156 27 H 0.258 0.742 28 H 0.027 0.973 29 H 0.039 0.961 30 H 0.414 0.586 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.527 -11.701 13.998 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.000 4.000 10 C 0.054 3.946 11 N -0.346 5.346 12 C 0.296 3.704 13 O -0.481 6.481 14 C -0.166 4.166 15 C 0.005 3.995 16 O -0.230 6.230 17 C 0.056 3.944 18 C -0.204 4.204 19 C -0.116 4.116 20 C -0.131 4.131 21 C -0.168 4.168 22 C 0.258 3.742 23 O -0.376 6.376 24 C -0.113 4.113 25 C -0.212 4.212 26 C -0.195 4.195 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.250 0.750 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.174 0.826 39 H 0.187 0.813 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.729 -11.913 14.880 22.381 hybrid contribution -0.494 1.362 -0.591 1.565 sum 11.235 -10.550 14.289 21.017 Atomic orbital electron populations 1.70116 1.07279 1.27257 1.49982 1.25724 0.95478 1.02143 0.94523 0.85694 0.79011 0.79769 0.78024 1.20454 1.22051 1.18493 1.20676 0.93049 0.89382 1.50825 0.91523 1.19113 1.00181 0.94051 0.86681 1.20562 0.85220 0.96379 0.92406 1.45841 1.10753 1.62560 1.15417 1.20898 0.91263 0.76624 0.81660 1.90668 1.33114 1.55717 1.68610 1.21386 0.95224 1.05765 0.94242 1.22352 0.84776 1.00707 0.91673 1.85960 1.33515 1.78010 1.25472 1.19127 0.94418 0.95813 0.85071 1.21796 0.97116 1.03358 0.98092 1.21175 0.99975 0.97182 0.93271 1.21521 0.91986 0.99070 1.00494 1.20995 0.96592 1.03445 0.95719 1.24707 0.94364 0.70623 0.84520 1.90529 1.90679 1.34235 1.22156 1.20874 0.98637 0.99328 0.92491 1.23001 0.98748 0.95935 1.03560 1.22389 0.92202 1.01889 1.02997 0.93293 0.95502 0.94240 0.74988 0.85116 0.85905 0.91960 0.91375 0.84803 0.83574 0.84892 0.82588 0.81330 0.89648 0.89254 0.91353 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.22 12.65 21.45 0.27 -49.95 16 2 C 0.02 1.12 5.43 84.65 0.46 1.58 16 3 Si 0.95 40.91 29.54 68.60 2.03 42.94 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.50 -24.47 8.59 25.60 0.22 -24.24 16 8 H 0.07 3.10 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.02 1.47 -52.93 -0.08 -0.06 16 10 C 0.18 7.68 5.50 86.38 0.48 8.16 16 11 N -0.70 -23.80 5.48 -463.05 -2.54 -26.34 16 12 C 0.51 16.14 7.83 87.66 0.69 16.83 16 13 O -0.60 -23.89 15.98 -3.04 -0.05 -23.94 16 14 C -0.13 -2.64 6.07 29.85 0.18 -2.46 16 15 C 0.08 1.74 4.03 71.98 0.29 2.03 16 16 O -0.32 -6.32 10.13 -92.49 -0.94 -7.26 16 17 C 0.10 1.91 6.68 22.46 0.15 2.06 16 18 C -0.18 -3.53 9.04 22.44 0.20 -3.33 16 19 C -0.10 -1.66 10.02 22.21 0.22 -1.44 16 20 C -0.11 -1.92 9.59 22.58 0.22 -1.71 16 21 C -0.17 -2.50 5.87 -20.16 -0.12 -2.61 16 22 C 0.40 4.86 11.46 70.17 0.80 5.67 16 23 O -0.50 -10.42 17.16 -2.95 -0.05 -10.47 16 24 C -0.09 -1.36 9.73 22.69 0.22 -1.14 16 25 C -0.18 -6.64 9.96 30.62 0.30 -6.34 16 26 C -0.16 -6.95 9.14 30.62 0.28 -6.68 16 27 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.69 8.09 -2.38 -0.02 1.67 16 30 H 0.41 12.32 8.33 -92.71 -0.77 11.55 16 31 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 34 H 0.07 1.52 7.62 -2.39 -0.02 1.50 16 35 H 0.13 2.57 6.28 -2.91 -0.02 2.55 16 36 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.13 2.21 7.64 -2.91 -0.02 2.19 16 38 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 39 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.06 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -67.32 375.55 3.49 -63.82 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.25 Total: 24.87 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.52 Total: -13.67 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.27 Total: -76.29 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.04 Total: -41.67 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -67.32 3.49 -63.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797768149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.807 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds