Wall clock time and date at job start Tue Mar 31 2020 11:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99585 * 2 1 4 4 H 1.48502 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47175 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47364 * 60.00270 * 3 2 1 7 7 C 1.37870 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00457 * 173.55793 * 7 2 1 9 9 C 1.50706 * 119.99833 * 353.55860 * 7 2 1 10 10 C 1.52999 * 115.55242 * 85.41175 * 9 7 2 11 11 N 1.46500 * 109.47238 * 65.12157 * 10 9 7 12 12 C 1.34780 * 119.99770 * 178.20095 * 11 10 9 13 13 O 1.21273 * 120.00142 * 0.27890 * 12 11 10 14 14 C 1.50706 * 119.99615 * 180.27729 * 12 11 10 15 15 C 1.52995 * 109.46610 * 180.02562 * 14 12 11 16 16 O 1.42904 * 109.47034 * 179.97438 * 15 14 12 17 17 C 1.35661 * 116.99940 * 179.97438 * 16 15 14 18 18 C 1.39077 * 119.88730 * 359.73096 * 17 16 15 19 19 C 1.37120 * 120.11444 * 179.71417 * 18 17 16 20 20 C 1.40042 * 119.88172 * 0.57809 * 19 18 17 21 21 C 1.46859 * 120.11249 * 179.67596 * 20 19 18 22 22 O 1.21289 * 120.00078 * 0.02562 * 21 20 19 23 23 C 1.40037 * 119.77269 * 359.70024 * 20 19 18 24 24 C 1.37115 * 119.88247 * 359.97438 * 23 20 19 25 25 C 1.53005 * 117.49487 * 231.07670 * 9 7 2 26 26 C 1.53001 * 117.49828 * 299.73513 * 9 7 2 27 27 H 0.97003 * 120.00760 * 5.05229 * 1 2 3 28 28 H 1.09001 * 109.46805 * 305.12717 * 10 9 7 29 29 H 1.09000 * 109.46993 * 185.12621 * 10 9 7 30 30 H 0.96997 * 120.00094 * 358.48004 * 11 10 9 31 31 H 1.09000 * 109.47121 * 300.00002 * 14 12 11 32 32 H 1.08993 * 109.47107 * 60.00578 * 14 12 11 33 33 H 1.09000 * 109.47238 * 299.99756 * 15 14 12 34 34 H 1.09005 * 109.47341 * 60.00077 * 15 14 12 35 35 H 1.08000 * 119.94086 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.06071 * 180.26967 * 19 18 17 37 37 H 1.07996 * 119.99866 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.06090 * 179.97438 * 23 20 19 39 39 H 1.08005 * 119.94411 * 180.02562 * 24 23 20 40 40 H 1.08996 * 117.49566 * 214.99957 * 25 9 7 41 41 H 1.08996 * 117.50086 * 0.03010 * 25 9 7 42 42 H 1.09001 * 117.49885 * 359.97438 * 26 9 7 43 43 H 1.08999 * 117.49630 * 144.97422 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7023 -3.0860 -1.1519 11 7 1.8115 -3.4579 -2.0337 12 6 1.5605 -4.0357 -3.2253 13 8 0.4163 -4.2431 -3.5696 14 6 2.7017 -4.4239 -4.1297 15 6 2.1470 -5.0541 -5.4087 16 8 3.2291 -5.4218 -6.2666 17 6 2.9070 -5.9989 -7.4514 18 6 1.5721 -6.2120 -7.7782 19 6 1.2411 -6.7896 -8.9770 20 6 2.2504 -7.1762 -9.8675 21 6 1.9018 -7.8017 -11.1497 22 8 0.7381 -7.9839 -11.4391 23 6 3.5932 -6.9646 -9.5310 24 6 3.9132 -6.3801 -8.3327 25 6 1.7471 -3.4738 1.2149 26 6 0.4417 -2.7018 1.4226 27 1 -0.4851 0.8367 -0.0740 28 1 0.0755 -2.3457 -1.6490 29 1 0.1079 -3.9705 -0.9228 30 1 2.7266 -3.2920 -1.7584 31 1 3.2817 -3.5368 -4.3841 32 1 3.3422 -5.1425 -3.6184 33 1 1.5668 -5.9412 -5.1546 34 1 1.5066 -4.3352 -5.9199 35 1 0.7948 -5.9182 -7.0885 36 1 0.2040 -6.9507 -9.2318 37 1 2.6817 -8.0995 -11.8349 38 1 4.3753 -7.2613 -10.2141 39 1 4.9485 -6.2161 -8.0723 40 1 1.6726 -4.5386 0.9944 41 1 2.6081 -3.1765 1.8134 42 1 0.4447 -1.8969 2.1577 43 1 -0.4918 -3.2584 1.3387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797768718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:34 Heat of formation + Delta-G solvation = -67.600322 kcal Electronic energy + Delta-G solvation = -24682.917046 eV Core-core repulsion = 20887.232862 eV Total energy + Delta-G solvation = -3795.684185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65662 -39.48550 -39.03117 -37.37479 -36.75743 -33.42801 -32.31867 -32.03378 -31.52580 -30.37172 -26.78109 -25.52212 -24.75090 -24.15771 -22.27759 -21.26578 -21.16110 -19.86179 -19.34554 -18.63487 -17.24151 -16.65311 -16.54956 -16.34219 -16.06224 -15.29371 -15.07176 -14.97198 -14.71837 -14.64620 -14.47300 -13.91408 -13.84826 -13.60659 -13.28274 -12.97639 -12.89480 -12.64703 -12.19728 -11.96500 -11.71908 -11.61724 -11.09021 -11.07864 -10.98718 -10.92511 -10.58059 -10.34298 -10.11260 -9.77600 -9.48028 -9.47990 -9.04714 -8.57833 -8.57364 -8.39282 -8.18766 -6.14902 -4.24080 0.37719 1.01717 2.15134 2.68819 3.01519 3.20036 3.29580 3.31143 3.47443 3.88326 3.96392 4.29431 4.37997 4.46439 4.66443 4.83943 4.85224 4.95024 5.07305 5.10168 5.13760 5.22892 5.26063 5.46273 5.61472 5.63104 5.64468 5.83246 5.94495 5.95556 6.04212 6.25582 6.31805 6.38301 6.47173 6.61997 6.78406 7.02309 7.03657 7.12749 7.14639 7.34648 7.40436 7.74593 8.13069 8.25967 8.69159 8.77687 9.43406 10.92893 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.002052 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.504565 B =13639.991262 C =13954.375040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.698 5.698 12 C 0.509 3.491 13 O -0.560 6.560 14 C -0.141 4.141 15 C 0.073 3.927 16 O -0.311 6.311 17 C 0.175 3.825 18 C -0.225 4.225 19 C -0.015 4.015 20 C -0.243 4.243 21 C 0.386 3.614 22 O -0.470 6.470 23 C -0.028 4.028 24 C -0.171 4.171 25 C -0.210 4.210 26 C -0.147 4.147 27 H 0.262 0.738 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.402 0.598 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.174 -12.862 -15.404 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.025 3.975 10 C 0.039 3.961 11 N -0.346 5.346 12 C 0.294 3.706 13 O -0.440 6.440 14 C -0.181 4.181 15 C -0.002 4.002 16 O -0.223 6.223 17 C 0.128 3.872 18 C -0.243 4.243 19 C -0.033 4.033 20 C -0.245 4.245 21 C 0.246 3.754 22 O -0.344 6.344 23 C -0.047 4.047 24 C -0.190 4.190 25 C -0.247 4.247 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.237 0.763 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.740 -12.900 -15.603 21.674 hybrid contribution 0.719 1.195 0.377 1.444 sum 8.459 -11.706 -15.226 20.986 Atomic orbital electron populations 1.69978 1.05921 1.26932 1.48147 1.25000 0.94820 0.99044 0.94253 0.86568 0.80166 0.83758 0.77695 1.19680 1.21012 1.20911 1.20374 0.92875 0.88539 1.52095 0.92072 1.19055 0.98736 0.94024 0.85730 1.21037 0.87228 0.97035 0.90752 1.45948 1.11764 1.59450 1.17442 1.20078 0.89642 0.78487 0.82423 1.90683 1.22787 1.56092 1.74427 1.21481 0.98715 1.03451 0.94444 1.22591 0.87594 1.00548 0.89449 1.85958 1.36476 1.73324 1.26570 1.19419 0.93155 0.89581 0.85083 1.21314 0.95607 1.07350 1.00061 1.21125 0.99798 0.91051 0.91341 1.20817 0.94263 1.09821 0.99573 1.23889 0.91407 0.73673 0.86450 1.90535 1.23966 1.44113 1.75774 1.21038 0.95188 0.93414 0.95039 1.20306 0.99047 1.05260 0.94360 1.23030 0.98728 0.95624 1.07367 1.22497 0.92286 1.01095 1.02680 0.92823 0.90801 0.94340 0.76339 0.87741 0.87974 0.90669 0.90567 0.84287 0.84730 0.88173 0.84404 0.84433 0.91636 0.90287 0.89771 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.74 12.91 55.43 0.72 -23.02 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 3 Si 0.89 20.07 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.50 -12.44 8.63 -34.44 -0.30 -12.74 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.03 0.57 1.38 -155.65 -0.21 0.36 16 10 C 0.16 3.51 5.50 -4.04 -0.02 3.49 16 11 N -0.70 -12.47 5.47 -60.29 -0.33 -12.80 16 12 C 0.51 8.50 7.83 -10.98 -0.09 8.41 16 13 O -0.56 -11.34 15.98 5.56 0.09 -11.25 16 14 C -0.14 -1.67 6.07 -27.88 -0.17 -1.84 16 15 C 0.07 0.86 4.02 37.15 0.15 1.01 16 16 O -0.31 -3.50 10.12 -18.68 -0.19 -3.69 16 17 C 0.17 1.84 6.70 -38.96 -0.26 1.58 16 18 C -0.22 -2.35 8.99 -39.68 -0.36 -2.71 16 19 C -0.01 -0.15 9.57 -39.31 -0.38 -0.52 16 20 C -0.24 -2.06 5.87 -105.06 -0.62 -2.68 16 21 C 0.39 2.97 11.44 34.22 0.39 3.36 16 22 O -0.47 -5.58 17.16 5.55 0.10 -5.49 16 23 C -0.03 -0.19 9.77 -39.32 -0.38 -0.58 16 24 C -0.17 -1.43 9.95 -39.68 -0.39 -1.82 16 25 C -0.21 -4.18 9.96 -26.69 -0.27 -4.45 16 26 C -0.15 -3.26 9.42 -26.69 -0.25 -3.52 16 27 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 28 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 29 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.40 6.46 8.37 -40.82 -0.34 6.12 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.89 7.59 -51.93 -0.39 0.49 16 34 H 0.08 0.94 7.62 -51.93 -0.40 0.54 16 35 H 0.14 1.43 6.27 -52.49 -0.33 1.10 16 36 H 0.13 1.33 7.64 -52.49 -0.40 0.93 16 37 H 0.10 0.35 8.06 -52.49 -0.42 -0.08 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -31.08 375.88 -8.28 -39.36 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.06 Total: 7.03 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.25 Total: -10.85 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.39 Total: -35.82 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.01 Total: -20.43 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.08 -8.28 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797768718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.241 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds