Wall clock time and date at job start Tue Mar 31 2020 11:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99585 * 2 1 4 4 H 1.48502 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47175 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47364 * 60.00270 * 3 2 1 7 7 C 1.37870 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00457 * 173.55793 * 7 2 1 9 9 C 1.50706 * 119.99833 * 353.55860 * 7 2 1 10 10 C 1.52999 * 115.55242 * 85.41175 * 9 7 2 11 11 N 1.46500 * 109.47238 * 65.12157 * 10 9 7 12 12 C 1.34780 * 119.99770 * 178.20095 * 11 10 9 13 13 O 1.21273 * 120.00142 * 0.27890 * 12 11 10 14 14 C 1.50706 * 119.99615 * 180.27729 * 12 11 10 15 15 C 1.52995 * 109.46610 * 180.02562 * 14 12 11 16 16 O 1.42904 * 109.47034 * 179.97438 * 15 14 12 17 17 C 1.35661 * 116.99940 * 179.97438 * 16 15 14 18 18 C 1.39077 * 119.88730 * 359.73096 * 17 16 15 19 19 C 1.37120 * 120.11444 * 179.71417 * 18 17 16 20 20 C 1.40042 * 119.88172 * 0.57809 * 19 18 17 21 21 C 1.46859 * 120.11249 * 179.67596 * 20 19 18 22 22 O 1.21289 * 120.00078 * 0.02562 * 21 20 19 23 23 C 1.40037 * 119.77269 * 359.70024 * 20 19 18 24 24 C 1.37115 * 119.88247 * 359.97438 * 23 20 19 25 25 C 1.53005 * 117.49487 * 231.07670 * 9 7 2 26 26 C 1.53001 * 117.49828 * 299.73513 * 9 7 2 27 27 H 0.97003 * 120.00760 * 5.05229 * 1 2 3 28 28 H 1.09001 * 109.46805 * 305.12717 * 10 9 7 29 29 H 1.09000 * 109.46993 * 185.12621 * 10 9 7 30 30 H 0.96997 * 120.00094 * 358.48004 * 11 10 9 31 31 H 1.09000 * 109.47121 * 300.00002 * 14 12 11 32 32 H 1.08993 * 109.47107 * 60.00578 * 14 12 11 33 33 H 1.09000 * 109.47238 * 299.99756 * 15 14 12 34 34 H 1.09005 * 109.47341 * 60.00077 * 15 14 12 35 35 H 1.08000 * 119.94086 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.06071 * 180.26967 * 19 18 17 37 37 H 1.07996 * 119.99866 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.06090 * 179.97438 * 23 20 19 39 39 H 1.08005 * 119.94411 * 180.02562 * 24 23 20 40 40 H 1.08996 * 117.49566 * 214.99957 * 25 9 7 41 41 H 1.08996 * 117.50086 * 0.03010 * 25 9 7 42 42 H 1.09001 * 117.49885 * 359.97438 * 26 9 7 43 43 H 1.08999 * 117.49630 * 144.97422 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7023 -3.0860 -1.1519 11 7 1.8115 -3.4579 -2.0337 12 6 1.5605 -4.0357 -3.2253 13 8 0.4163 -4.2431 -3.5696 14 6 2.7017 -4.4239 -4.1297 15 6 2.1470 -5.0541 -5.4087 16 8 3.2291 -5.4218 -6.2666 17 6 2.9070 -5.9989 -7.4514 18 6 1.5721 -6.2120 -7.7782 19 6 1.2411 -6.7896 -8.9770 20 6 2.2504 -7.1762 -9.8675 21 6 1.9018 -7.8017 -11.1497 22 8 0.7381 -7.9839 -11.4391 23 6 3.5932 -6.9646 -9.5310 24 6 3.9132 -6.3801 -8.3327 25 6 1.7471 -3.4738 1.2149 26 6 0.4417 -2.7018 1.4226 27 1 -0.4851 0.8367 -0.0740 28 1 0.0755 -2.3457 -1.6490 29 1 0.1079 -3.9705 -0.9228 30 1 2.7266 -3.2920 -1.7584 31 1 3.2817 -3.5368 -4.3841 32 1 3.3422 -5.1425 -3.6184 33 1 1.5668 -5.9412 -5.1546 34 1 1.5066 -4.3352 -5.9199 35 1 0.7948 -5.9182 -7.0885 36 1 0.2040 -6.9507 -9.2318 37 1 2.6817 -8.0995 -11.8349 38 1 4.3753 -7.2613 -10.2141 39 1 4.9485 -6.2161 -8.0723 40 1 1.6726 -4.5386 0.9944 41 1 2.6081 -3.1765 1.8134 42 1 0.4447 -1.8969 2.1577 43 1 -0.4918 -3.2584 1.3387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797768718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:33 Heat of formation + Delta-G solvation = -86.607792 kcal Electronic energy + Delta-G solvation = -24683.741272 eV Core-core repulsion = 20887.232862 eV Total energy + Delta-G solvation = -3796.508410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43835 -40.69656 -39.95145 -38.53743 -38.06015 -34.98877 -33.98266 -33.28376 -32.20966 -31.15147 -28.33963 -27.30624 -25.60830 -25.11383 -23.14032 -22.89961 -21.83715 -21.38918 -20.94438 -19.51109 -18.27324 -17.99000 -17.51099 -17.42053 -17.12268 -16.70281 -16.51762 -16.14768 -15.98675 -15.57549 -15.38085 -15.25051 -14.81759 -14.56651 -14.35918 -14.21906 -14.15070 -13.63982 -13.58046 -13.46017 -12.94694 -12.88522 -12.79884 -12.78032 -12.32912 -12.04936 -11.83327 -11.81847 -11.50210 -11.01705 -10.86183 -10.76261 -10.47612 -10.14203 -10.07549 -9.85486 -9.31828 -8.10996 -6.24112 -0.29679 0.34719 1.40756 1.45083 1.51869 1.53887 1.65894 1.74870 2.41434 2.63051 2.81066 3.17701 3.42959 3.49245 3.58568 3.76129 3.82823 3.89993 4.04730 4.18976 4.24691 4.31314 4.38969 4.54370 4.58014 4.59586 4.64293 4.69157 4.73834 4.76733 4.97345 4.99449 5.03421 5.18527 5.26507 5.27019 5.35755 5.56204 5.59538 5.66114 5.66311 5.77663 6.23626 6.35628 6.55907 6.71860 6.84375 7.33086 7.45908 8.96659 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.002052 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.504565 B =13639.991262 C =13954.375040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.501 4.501 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.178 3.822 11 N -0.695 5.695 12 C 0.507 3.493 13 O -0.600 6.600 14 C -0.126 4.126 15 C 0.079 3.921 16 O -0.311 6.311 17 C 0.152 3.848 18 C -0.240 4.240 19 C -0.036 4.036 20 C -0.251 4.251 21 C 0.395 3.605 22 O -0.519 6.519 23 C -0.010 4.010 24 C -0.172 4.172 25 C -0.174 4.174 26 C -0.162 4.162 27 H 0.258 0.742 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.414 0.586 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.187 0.813 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -14.074 -16.727 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.002 3.998 10 C 0.054 3.946 11 N -0.344 5.344 12 C 0.295 3.705 13 O -0.482 6.482 14 C -0.165 4.165 15 C 0.003 3.997 16 O -0.224 6.224 17 C 0.105 3.895 18 C -0.258 4.258 19 C -0.054 4.054 20 C -0.252 4.252 21 C 0.257 3.743 22 O -0.396 6.396 23 C -0.028 4.028 24 C -0.190 4.190 25 C -0.211 4.211 26 C -0.200 4.200 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.250 0.750 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.204 0.796 39 H 0.177 0.823 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.545 -14.122 -16.926 24.884 hybrid contribution -0.430 1.507 0.731 1.729 sum 11.115 -12.615 -16.195 23.344 Atomic orbital electron populations 1.70109 1.07336 1.27252 1.50009 1.25726 0.95445 1.02175 0.94489 0.85636 0.79630 0.80106 0.77028 1.18282 1.21464 1.21343 1.20706 0.93239 0.89416 1.50542 0.91491 1.19099 0.99732 0.94615 0.86364 1.20563 0.87851 0.95577 0.90625 1.45816 1.11311 1.59705 1.17590 1.20886 0.90397 0.77074 0.82160 1.90670 1.25027 1.57425 1.75094 1.21387 0.96756 1.04976 0.93411 1.22398 0.87721 0.99960 0.89574 1.85920 1.35735 1.73827 1.26949 1.19732 0.93665 0.90695 0.85391 1.21279 0.95874 1.08343 1.00343 1.21199 1.00141 0.92105 0.91969 1.21170 0.94831 1.09438 0.99792 1.24653 0.91595 0.71710 0.86292 1.90537 1.26340 1.46149 1.76567 1.21519 0.95292 0.91120 0.94826 1.20692 0.99491 1.04546 0.94283 1.23015 0.97261 0.96285 1.04534 1.22438 0.93865 1.01486 1.02257 0.93287 0.95241 0.94509 0.75003 0.85819 0.84964 0.91348 0.91990 0.85507 0.85893 0.82470 0.79597 0.82291 0.89157 0.89445 0.91919 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.80 12.91 21.44 0.28 -50.53 16 2 C 0.02 1.15 5.39 84.65 0.46 1.61 16 3 Si 0.95 41.32 29.55 68.60 2.03 43.35 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -24.67 8.63 25.60 0.22 -24.45 16 8 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.12 1.38 -52.92 -0.07 0.05 16 10 C 0.18 7.83 5.50 86.38 0.48 8.31 16 11 N -0.70 -24.40 5.47 -463.06 -2.54 -26.94 16 12 C 0.51 16.79 7.83 87.66 0.69 17.48 16 13 O -0.60 -24.99 15.98 -3.01 -0.05 -25.04 16 14 C -0.13 -2.77 6.07 29.85 0.18 -2.58 16 15 C 0.08 1.84 4.02 71.98 0.29 2.13 16 16 O -0.31 -6.65 10.12 -89.77 -0.91 -7.56 16 17 C 0.15 3.05 6.70 22.67 0.15 3.21 16 18 C -0.24 -5.24 8.99 22.21 0.20 -5.04 16 19 C -0.04 -0.74 9.57 22.44 0.21 -0.52 16 20 C -0.25 -3.77 5.87 -20.15 -0.12 -3.89 16 21 C 0.39 5.09 11.44 70.08 0.80 5.89 16 22 O -0.52 -12.06 17.16 -3.06 -0.05 -12.11 16 23 C -0.01 -0.09 9.77 22.44 0.22 0.12 16 24 C -0.17 -2.36 9.95 22.21 0.22 -2.14 16 25 C -0.17 -6.58 9.96 30.62 0.30 -6.28 16 26 C -0.16 -7.21 9.42 30.62 0.29 -6.92 16 27 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 28 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16 30 H 0.41 12.55 8.37 -92.71 -0.78 11.77 16 31 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 1.66 7.59 -2.39 -0.02 1.65 16 34 H 0.06 1.60 7.62 -2.38 -0.02 1.58 16 35 H 0.13 2.93 6.27 -2.91 -0.02 2.91 16 36 H 0.12 2.69 7.64 -2.91 -0.02 2.67 16 37 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -70.87 375.88 3.53 -67.34 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.25 Total: 24.52 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.52 Total: -13.03 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.26 Total: -77.46 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.01 Total: -44.71 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -70.87 3.53 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797768718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.264 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds