Wall clock time and date at job start Tue Mar 31 2020 11:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12452 * 342.47719 * 3 2 1 5 5 C 1.37957 * 119.95872 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.21151 * 359.72622 * 5 4 3 7 7 C 1.38817 * 120.24742 * 0.55123 * 6 5 4 8 8 O 1.35912 * 119.97895 * 179.72713 * 7 6 5 9 9 C 1.42898 * 117.00151 * 359.72100 * 8 7 6 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 8 7 11 11 O 1.45203 * 109.47234 * 65.00025 * 10 9 8 12 12 C 1.34224 * 117.00031 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00402 * 359.97438 * 12 11 10 14 14 C 1.50710 * 120.00081 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47392 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47305 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47305 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47020 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00466 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99989 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00236 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47152 * 89.99739 * 22 20 18 24 24 H 1.48496 * 109.47441 * 210.00107 * 22 20 18 25 25 H 1.48500 * 109.46749 * 330.00323 * 22 20 18 26 26 C 1.38482 * 120.03977 * 359.44785 * 7 6 5 27 27 H 1.07995 * 120.02236 * 359.95838 * 4 3 2 28 28 H 1.07995 * 119.89837 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.87978 * 180.27561 * 6 5 4 30 30 H 1.09002 * 109.47259 * 300.00539 * 9 8 7 31 31 H 1.09001 * 109.47074 * 60.00560 * 9 8 7 32 32 H 1.09001 * 109.47630 * 185.00204 * 10 9 8 33 33 H 1.09004 * 109.47346 * 305.00335 * 10 9 8 34 34 H 1.09000 * 109.46802 * 299.99709 * 14 12 11 35 35 H 1.08999 * 109.47072 * 59.99669 * 14 12 11 36 36 H 1.09000 * 109.47085 * 299.99750 * 15 14 12 37 37 H 1.08999 * 109.47108 * 59.99906 * 15 14 12 38 38 H 1.09000 * 109.46939 * 299.99954 * 16 15 14 39 39 H 1.08999 * 109.47021 * 59.99968 * 16 15 14 40 40 H 1.09000 * 109.47085 * 299.99865 * 17 16 15 41 41 H 1.08999 * 109.47108 * 60.00020 * 17 16 15 42 42 H 0.96999 * 119.99592 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.10734 * 180.25254 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1510 0.3637 5 6 4.6490 -1.1467 0.3620 6 6 5.3409 -0.0067 -0.0044 7 6 4.6525 1.1445 -0.3619 8 8 5.3381 2.2634 -0.7157 9 6 6.7647 2.1851 -0.6913 10 6 7.3567 3.5305 -1.1160 11 8 7.0107 4.5430 -0.1344 12 6 7.4567 5.7886 -0.3607 13 8 8.1147 6.0251 -1.3460 14 6 7.1376 6.8921 0.6149 15 6 7.7598 8.2014 0.1255 16 6 7.4353 9.3217 1.1157 17 6 8.0570 10.6311 0.6259 18 6 7.7379 11.7344 1.6015 19 1 7.1501 11.5231 2.4825 20 6 8.1964 13.0139 1.3694 21 7 7.9174 13.9769 2.2205 22 14 9.2137 13.3795 -0.1540 23 1 8.3131 13.7665 -1.2695 24 1 10.1527 14.4934 0.1333 25 1 9.9840 12.1690 -0.5370 26 6 3.2677 1.1517 -0.3639 27 1 2.7323 -2.0442 0.6464 28 1 5.1904 -2.0379 0.6430 29 1 6.4209 -0.0107 -0.0081 30 1 7.0982 1.9442 0.3181 31 1 7.0978 1.4079 -1.3792 32 1 8.4413 3.4453 -1.1833 33 1 6.9535 3.8143 -2.0882 34 1 6.0565 7.0091 0.6902 35 1 7.5449 6.6404 1.5941 36 1 8.8409 8.0841 0.0506 37 1 7.3528 8.4533 -0.8537 38 1 6.3542 9.4388 1.1902 39 1 7.8419 9.0700 2.0951 40 1 9.1381 10.5143 0.5510 41 1 7.6500 10.8826 -0.3534 42 1 8.2404 14.8769 2.0573 43 1 2.7311 2.0455 -0.6458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805698551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:08 Heat of formation + Delta-G solvation = -88.521589 kcal Electronic energy + Delta-G solvation = -23817.829072 eV Core-core repulsion = 20021.237673 eV Total energy + Delta-G solvation = -3796.591399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92993 -40.47132 -38.53142 -36.92135 -36.56370 -35.13301 -32.68871 -32.16646 -31.72881 -30.43694 -29.82653 -26.37639 -25.07948 -23.39141 -23.08653 -22.29630 -20.59224 -20.10252 -19.94839 -17.82048 -17.42192 -17.06480 -16.80829 -16.62800 -16.53093 -16.28245 -15.85859 -15.00735 -14.65279 -14.46375 -14.24854 -14.15914 -13.76460 -13.61400 -13.29166 -13.09476 -12.92780 -12.70621 -12.51091 -12.39294 -12.33292 -12.14005 -11.79840 -11.64031 -11.53462 -11.18112 -10.93560 -10.81737 -10.60286 -10.54196 -9.89401 -9.69619 -9.65368 -9.55239 -9.15142 -8.89168 -8.51232 -6.02114 -3.99913 0.13709 0.75260 2.09240 2.16821 2.40781 2.44908 2.53307 3.29315 3.33529 3.38216 3.40728 3.45627 4.04984 4.22445 4.34399 4.38711 4.46767 4.48075 4.51061 4.63759 4.74975 4.81999 4.94839 5.07052 5.17891 5.19039 5.24642 5.32490 5.51335 5.63042 5.66573 5.69256 5.91783 5.92967 6.02633 6.23074 6.31948 6.59465 6.73290 6.73926 6.93741 6.97112 7.33802 7.46506 7.68112 7.82493 8.56262 9.02914 9.60893 11.11321 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.001680 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.096149 B =16662.253598 C =17555.446912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.254 3.746 3 C 0.012 3.988 4 C -0.110 4.110 5 C -0.078 4.078 6 C -0.182 4.182 7 C 0.135 3.865 8 O -0.303 6.303 9 C 0.061 3.939 10 C 0.065 3.935 11 O -0.355 6.355 12 C 0.462 3.538 13 O -0.507 6.507 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.103 4.103 17 C -0.015 4.015 18 C -0.521 4.521 19 H 0.072 0.928 20 C 0.065 3.935 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 C -0.103 4.103 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.262 0.738 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -35.468 -5.518 36.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.062 4.062 3 C 0.009 3.991 4 C -0.131 4.131 5 C -0.096 4.096 6 C -0.202 4.202 7 C 0.089 3.911 8 O -0.216 6.216 9 C -0.014 4.014 10 C -0.009 4.009 11 O -0.272 6.272 12 C 0.306 3.694 13 O -0.394 6.394 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.190 1.190 26 C -0.125 4.125 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.778 -35.036 -5.862 35.843 hybrid contribution 1.236 0.155 -0.844 1.504 sum -3.542 -34.882 -6.706 35.696 Atomic orbital electron populations 1.81296 1.11956 1.07071 1.08009 1.25578 0.92512 0.94011 0.94067 1.15638 0.84305 0.95077 1.04095 1.21097 0.94340 0.97081 1.00604 1.20894 0.93453 0.97963 0.97317 1.21544 1.00959 0.93249 1.04407 1.18715 0.91262 0.86011 0.95139 1.86190 1.19756 1.33042 1.82633 1.22981 0.78571 0.96853 1.03033 1.23023 1.00340 0.85086 0.92417 1.86585 1.71549 1.19085 1.50008 1.24216 0.75962 0.82744 0.86495 1.90674 1.36634 1.82913 1.29217 1.21595 1.04484 0.91140 0.97715 1.21608 1.00982 0.91861 1.00440 1.21477 1.00776 0.94422 0.97351 1.19575 0.95957 0.93049 0.96679 1.21174 1.33935 0.92245 1.08521 0.91036 1.25045 0.95847 0.96279 0.96421 1.69920 1.46489 1.01478 1.36508 0.86772 0.80696 0.78111 0.83692 1.20321 1.21436 1.18953 1.20389 0.91300 0.98406 1.02372 0.84750 0.84491 0.84596 0.90248 0.89393 0.88752 0.89908 0.87598 0.87669 0.91541 0.91530 0.92555 0.92545 0.96586 0.97011 0.92792 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.36 18.54 41.84 0.78 -3.58 16 2 C 0.25 2.06 15.33 -22.47 -0.34 1.71 16 3 C 0.01 0.07 5.73 -106.96 -0.61 -0.54 16 4 C -0.11 -0.45 9.75 -39.15 -0.38 -0.84 16 5 C -0.08 -0.25 10.03 -39.66 -0.40 -0.65 16 6 C -0.18 -0.74 9.03 -39.35 -0.36 -1.09 16 7 C 0.13 0.84 6.68 -39.28 -0.26 0.58 16 8 O -0.30 -2.28 10.10 -23.03 -0.23 -2.51 16 9 C 0.06 0.30 5.13 37.16 0.19 0.49 16 10 C 0.07 0.49 5.84 37.16 0.22 0.71 16 11 O -0.35 -3.78 10.19 -42.01 -0.43 -4.20 16 12 C 0.46 5.87 7.96 36.01 0.29 6.15 16 13 O -0.51 -7.85 15.73 -18.75 -0.29 -8.15 16 14 C -0.11 -1.35 5.81 -27.88 -0.16 -1.51 16 15 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 16 C -0.10 -1.94 5.15 -26.73 -0.14 -2.08 16 17 C -0.02 -0.37 4.04 -27.89 -0.11 -0.48 16 18 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 22 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 26 C -0.10 -0.66 9.69 -39.01 -0.38 -1.04 16 27 H 0.13 0.33 8.06 -52.49 -0.42 -0.10 16 28 H 0.14 0.10 8.06 -52.49 -0.42 -0.32 16 29 H 0.14 0.27 6.28 -52.49 -0.33 -0.06 16 30 H 0.08 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.09 0.19 7.64 -51.93 -0.40 -0.20 16 32 H 0.09 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -35.35 378.42 -7.50 -42.85 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -6.12 Total: -6.22 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.00 Total: -13.91 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 1.55 Total: -30.94 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.96 Total: -14.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.35 -7.50 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.671 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds