Wall clock time and date at job start Tue Mar 31 2020 11:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12452 * 342.47719 * 3 2 1 5 5 C 1.37957 * 119.95872 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.21151 * 359.72622 * 5 4 3 7 7 C 1.38817 * 120.24742 * 0.55123 * 6 5 4 8 8 O 1.35912 * 119.97895 * 179.72713 * 7 6 5 9 9 C 1.42898 * 117.00151 * 359.72100 * 8 7 6 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 8 7 11 11 O 1.45203 * 109.47234 * 65.00025 * 10 9 8 12 12 C 1.34224 * 117.00031 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00402 * 359.97438 * 12 11 10 14 14 C 1.50710 * 120.00081 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47392 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47305 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47305 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47020 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00466 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99989 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00236 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47152 * 89.99739 * 22 20 18 24 24 H 1.48496 * 109.47441 * 210.00107 * 22 20 18 25 25 H 1.48500 * 109.46749 * 330.00323 * 22 20 18 26 26 C 1.38482 * 120.03977 * 359.44785 * 7 6 5 27 27 H 1.07995 * 120.02236 * 359.95838 * 4 3 2 28 28 H 1.07995 * 119.89837 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.87978 * 180.27561 * 6 5 4 30 30 H 1.09002 * 109.47259 * 300.00539 * 9 8 7 31 31 H 1.09001 * 109.47074 * 60.00560 * 9 8 7 32 32 H 1.09001 * 109.47630 * 185.00204 * 10 9 8 33 33 H 1.09004 * 109.47346 * 305.00335 * 10 9 8 34 34 H 1.09000 * 109.46802 * 299.99709 * 14 12 11 35 35 H 1.08999 * 109.47072 * 59.99669 * 14 12 11 36 36 H 1.09000 * 109.47085 * 299.99750 * 15 14 12 37 37 H 1.08999 * 109.47108 * 59.99906 * 15 14 12 38 38 H 1.09000 * 109.46939 * 299.99954 * 16 15 14 39 39 H 1.08999 * 109.47021 * 59.99968 * 16 15 14 40 40 H 1.09000 * 109.47085 * 299.99865 * 17 16 15 41 41 H 1.08999 * 109.47108 * 60.00020 * 17 16 15 42 42 H 0.96999 * 119.99592 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.10734 * 180.25254 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1510 0.3637 5 6 4.6490 -1.1467 0.3620 6 6 5.3409 -0.0067 -0.0044 7 6 4.6525 1.1445 -0.3619 8 8 5.3381 2.2634 -0.7157 9 6 6.7647 2.1851 -0.6913 10 6 7.3567 3.5305 -1.1160 11 8 7.0107 4.5430 -0.1344 12 6 7.4567 5.7886 -0.3607 13 8 8.1147 6.0251 -1.3460 14 6 7.1376 6.8921 0.6149 15 6 7.7598 8.2014 0.1255 16 6 7.4353 9.3217 1.1157 17 6 8.0570 10.6311 0.6259 18 6 7.7379 11.7344 1.6015 19 1 7.1501 11.5231 2.4825 20 6 8.1964 13.0139 1.3694 21 7 7.9174 13.9769 2.2205 22 14 9.2137 13.3795 -0.1540 23 1 8.3131 13.7665 -1.2695 24 1 10.1527 14.4934 0.1333 25 1 9.9840 12.1690 -0.5370 26 6 3.2677 1.1517 -0.3639 27 1 2.7323 -2.0442 0.6464 28 1 5.1904 -2.0379 0.6430 29 1 6.4209 -0.0107 -0.0081 30 1 7.0982 1.9442 0.3181 31 1 7.0978 1.4079 -1.3792 32 1 8.4413 3.4453 -1.1833 33 1 6.9535 3.8143 -2.0882 34 1 6.0565 7.0091 0.6902 35 1 7.5449 6.6404 1.5941 36 1 8.8409 8.0841 0.0506 37 1 7.3528 8.4533 -0.8537 38 1 6.3542 9.4388 1.1902 39 1 7.8419 9.0700 2.0951 40 1 9.1381 10.5143 0.5510 41 1 7.6500 10.8826 -0.3534 42 1 8.2404 14.8769 2.0573 43 1 2.7311 2.0455 -0.6458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805698551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:07 Heat of formation + Delta-G solvation = -108.541190 kcal Electronic energy + Delta-G solvation = -23818.697187 eV Core-core repulsion = 20021.237673 eV Total energy + Delta-G solvation = -3797.459514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59556 -41.11107 -39.01698 -37.79538 -37.22993 -36.63076 -34.63928 -32.66541 -32.28264 -31.79549 -30.39858 -27.92175 -25.64186 -24.39777 -23.56486 -23.18984 -21.92297 -21.48085 -20.36937 -18.90830 -18.61676 -17.98938 -17.64219 -17.45734 -17.01706 -16.85040 -16.53538 -16.25687 -16.14025 -15.14298 -15.06977 -14.84653 -14.67883 -14.58269 -14.30010 -14.07142 -13.83052 -13.80510 -13.63473 -13.46280 -13.33016 -12.87472 -12.82183 -12.69621 -12.34611 -12.11333 -12.01484 -11.99554 -11.74961 -11.66894 -11.61876 -11.35939 -11.29712 -11.20684 -10.74968 -10.02435 -9.26072 -8.28447 -6.31819 -0.26699 0.41602 1.20852 1.36335 1.37615 1.49835 1.50192 1.66621 1.89701 2.10864 2.37019 2.86824 2.87886 3.07083 3.61358 3.77364 3.87561 3.96157 4.03684 4.09455 4.11891 4.17025 4.26314 4.31039 4.41246 4.51107 4.58199 4.62099 4.66585 4.76707 4.83175 4.89052 5.11586 5.18281 5.18840 5.22635 5.34024 5.38913 5.40726 5.60835 5.63253 5.66063 5.69601 6.30671 6.35480 6.39305 6.75486 6.76978 7.33016 8.88161 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.001680 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.096149 B =16662.253598 C =17555.446912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.278 3.722 3 C -0.003 4.003 4 C -0.103 4.103 5 C -0.072 4.072 6 C -0.172 4.172 7 C 0.118 3.882 8 O -0.330 6.330 9 C 0.061 3.939 10 C 0.056 3.944 11 O -0.356 6.356 12 C 0.468 3.532 13 O -0.541 6.541 14 C -0.108 4.108 15 C -0.101 4.101 16 C -0.096 4.096 17 C -0.017 4.017 18 C -0.532 4.532 19 H 0.036 0.964 20 C 0.002 3.998 21 N -0.951 5.951 22 Si 0.949 3.051 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.249 1.249 26 C -0.118 4.118 27 H 0.152 0.848 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.266 0.734 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 -38.332 -6.262 38.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.036 4.036 3 C -0.007 4.007 4 C -0.124 4.124 5 C -0.090 4.090 6 C -0.191 4.191 7 C 0.073 3.927 8 O -0.244 6.244 9 C -0.013 4.013 10 C -0.017 4.017 11 O -0.273 6.273 12 C 0.313 3.687 13 O -0.431 6.431 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.054 4.054 18 C -0.570 4.570 19 H 0.054 0.946 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.773 3.227 23 H -0.193 1.193 24 H -0.209 1.209 25 H -0.172 1.172 26 C -0.140 4.140 27 H 0.170 0.830 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.949 -37.937 -6.596 38.619 hybrid contribution 0.669 0.975 -0.539 1.299 sum -2.280 -36.962 -7.136 37.714 Atomic orbital electron populations 1.81304 1.13495 1.08878 1.10242 1.25936 0.92851 0.92408 0.92439 1.15694 0.83036 0.96027 1.05938 1.21393 0.95083 0.96741 0.99182 1.21287 0.92972 0.98785 0.95962 1.21886 1.02319 0.92366 1.02571 1.18818 0.91058 0.86598 0.96241 1.86139 1.21018 1.34087 1.83159 1.23163 0.77500 0.95889 1.04791 1.23366 1.01554 0.85341 0.91451 1.86564 1.71089 1.18766 1.50840 1.24166 0.75206 0.83499 0.85801 1.90663 1.38303 1.83550 1.30567 1.21492 1.05272 0.89332 0.98402 1.21381 1.00920 0.92575 0.99015 1.21337 1.00420 0.93271 0.98283 1.19576 0.96369 0.93946 0.95554 1.21566 1.33079 0.93997 1.08368 0.94591 1.26023 0.97318 0.96119 0.99967 1.70069 1.48191 1.02111 1.38861 0.85670 0.79154 0.78523 0.79384 1.19349 1.20865 1.17227 1.20384 0.91968 0.98343 1.03259 0.82996 0.81210 0.81981 0.88729 0.86100 0.87315 0.90920 0.86026 0.85447 0.92017 0.92368 0.92461 0.92162 0.96424 0.96746 0.92562 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.35 18.54 19.00 0.35 -10.00 16 2 C 0.28 4.61 15.33 88.33 1.35 5.97 16 3 C 0.00 -0.04 5.73 -21.38 -0.12 -0.16 16 4 C -0.10 -0.59 9.75 22.55 0.22 -0.37 16 5 C -0.07 -0.18 10.03 22.22 0.22 0.04 16 6 C -0.17 -0.79 9.03 22.42 0.20 -0.59 16 7 C 0.12 1.27 6.68 22.47 0.15 1.42 16 8 O -0.33 -4.45 10.10 -89.15 -0.90 -5.35 16 9 C 0.06 0.43 5.13 71.98 0.37 0.80 16 10 C 0.06 0.74 5.84 71.98 0.42 1.16 16 11 O -0.36 -6.93 10.19 -48.71 -0.50 -7.42 16 12 C 0.47 11.14 7.96 71.24 0.57 11.71 16 13 O -0.54 -16.18 15.73 21.97 0.35 -15.83 16 14 C -0.11 -2.38 5.81 29.85 0.17 -2.21 16 15 C -0.10 -3.02 4.50 30.59 0.14 -2.89 16 16 C -0.10 -3.52 5.15 30.59 0.16 -3.37 16 17 C -0.02 -0.80 4.04 29.85 0.12 -0.68 16 18 C -0.53 -31.02 9.66 25.60 0.25 -30.78 16 19 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 20 C 0.00 0.13 5.47 84.66 0.46 0.60 16 21 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 22 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 26 C -0.12 -1.49 9.69 22.64 0.22 -1.27 16 27 H 0.15 0.31 8.06 -2.91 -0.02 0.29 16 28 H 0.17 -0.64 8.06 -2.91 -0.02 -0.66 16 29 H 0.16 -0.16 6.28 -2.91 -0.02 -0.18 16 30 H 0.09 0.39 7.67 -2.39 -0.02 0.37 16 31 H 0.12 0.05 7.64 -2.39 -0.02 0.03 16 32 H 0.11 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.13 2.27 8.14 -2.39 -0.02 2.26 16 36 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 37 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 41 H 0.01 0.66 7.57 -2.39 -0.02 0.65 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -79.13 378.42 7.34 -71.79 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 0.96 Total: 0.38 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.90 Total: -20.62 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: 0.65 Total: -70.07 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.05 Total: -28.60 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -79.13 7.34 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.750 kcal (2) G-P(sol) polarization free energy of solvation -79.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds