Wall clock time and date at job start Tue Mar 31 2020 11:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21288 * 119.99981 * 2 1 4 4 N 1.34771 * 120.00014 * 179.97438 * 2 1 3 5 5 C 1.39961 * 120.00014 * 185.50529 * 4 2 1 6 6 C 1.39000 * 119.99749 * 212.86003 * 5 4 2 7 7 C 1.38211 * 120.23469 * 180.02562 * 6 5 4 8 8 C 1.38006 * 120.22860 * 359.96963 * 7 6 5 9 9 C 1.50706 * 120.00909 * 179.97438 * 8 7 6 10 10 C 1.39632 * 119.99063 * 0.02562 * 8 7 6 11 11 C 1.47737 * 120.11617 * 179.97438 * 10 8 7 12 12 O 1.21471 * 120.00532 * 348.82604 * 11 10 8 13 13 O 1.34706 * 120.00047 * 168.82556 * 11 10 8 14 14 C 1.45202 * 117.00214 * 185.73378 * 13 11 10 15 15 C 1.50695 * 112.85534 * 285.61663 * 14 13 11 16 16 H 1.07995 * 119.99968 * 126.47200 * 15 14 13 17 17 C 1.37876 * 119.99723 * 306.47495 * 15 14 13 18 18 N 1.31514 * 120.00276 * 4.57210 * 17 15 14 19 19 Si 1.86798 * 120.00036 * 184.56827 * 17 15 14 20 20 H 1.48505 * 109.46853 * 60.00147 * 19 17 15 21 21 H 1.48498 * 109.47450 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47191 * 300.00310 * 19 17 15 23 23 C 1.53789 * 113.61227 * 154.30512 * 14 13 11 24 24 C 1.53783 * 87.08132 * 220.01983 * 23 14 13 25 25 C 1.53784 * 87.07842 * 25.43853 * 24 23 14 26 26 C 1.38578 * 119.99597 * 33.11373 * 5 4 2 27 27 H 1.09000 * 109.46882 * 240.00377 * 1 2 3 28 28 H 1.09001 * 109.47176 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47014 * 120.00420 * 1 2 3 30 30 H 0.97005 * 119.99888 * 5.50294 * 4 2 1 31 31 H 1.08000 * 119.88146 * 359.97438 * 6 5 4 32 32 H 1.08003 * 119.88707 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47072 * 256.74795 * 9 8 7 34 34 H 1.09000 * 109.46573 * 16.74175 * 9 8 7 35 35 H 1.08996 * 109.46928 * 136.73977 * 9 8 7 36 36 H 0.96995 * 120.00284 * 185.00046 * 18 17 15 37 37 H 1.08988 * 113.61737 * 334.57260 * 23 14 13 38 38 H 1.09002 * 113.60778 * 105.47640 * 23 14 13 39 39 H 1.08995 * 113.62178 * 270.88781 * 24 23 14 40 40 H 1.09003 * 113.68701 * 139.99339 * 24 23 14 41 41 H 1.09006 * 113.61118 * 220.01786 * 25 24 23 42 42 H 1.08993 * 113.69409 * 89.12430 * 25 24 23 43 43 H 1.08004 * 120.11700 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5757 -1.1699 0.1168 6 6 4.3245 -2.1503 -0.5237 7 6 5.7020 -2.1579 -0.4117 8 6 6.3437 -1.1919 0.3363 9 6 7.8460 -1.2053 0.4555 10 6 5.6008 -0.2025 0.9836 11 6 6.2848 0.8327 1.7855 12 8 7.4639 0.7138 2.0523 13 8 5.6010 1.9085 2.2209 14 6 6.3627 2.9464 2.8923 15 6 6.7752 2.5590 4.2890 16 1 7.8131 2.6182 4.5815 17 6 5.8275 2.1290 5.1934 18 7 4.5788 1.9709 4.8122 19 14 6.3172 1.7709 6.9601 20 1 6.8715 3.0016 7.5792 21 1 5.1240 1.3261 7.7241 22 1 7.3455 0.6997 6.9814 23 6 5.7177 4.3396 2.8025 24 6 7.1362 4.8965 2.5953 25 6 7.5144 3.5115 2.0442 26 6 4.2096 -0.1983 0.8748 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6992 -2.0053 -0.0797 31 1 3.8280 -2.9092 -1.1102 32 1 6.2783 -2.9226 -0.9114 33 1 8.1295 -1.5985 1.4317 34 1 8.2668 -1.8370 -0.3268 35 1 8.2281 -0.1902 0.3476 36 1 3.8986 1.7388 5.4635 37 1 5.0685 4.4652 1.9362 38 1 5.2522 4.6659 3.7325 39 1 7.6457 5.1507 3.5247 40 1 7.1901 5.6918 1.8518 41 1 8.4993 3.1692 2.3620 42 1 7.3569 3.4093 0.9706 43 1 3.6292 0.5621 1.3762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:43 Heat of formation + Delta-G solvation = -92.442684 kcal Electronic energy + Delta-G solvation = -27332.105087 eV Core-core repulsion = 23535.343657 eV Total energy + Delta-G solvation = -3796.761430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73046 -41.03486 -39.74799 -38.51035 -36.26372 -35.85291 -34.40832 -32.81630 -32.28082 -30.49554 -28.28895 -27.26981 -26.44548 -25.63479 -24.47523 -23.05634 -21.84528 -21.20647 -20.49695 -19.24397 -18.51322 -17.91641 -17.15813 -16.87627 -16.73541 -16.67047 -16.34326 -16.21514 -15.78762 -15.52774 -15.14209 -14.78338 -14.47322 -14.38533 -14.04445 -13.57365 -13.48378 -13.38892 -13.08706 -12.99399 -12.98017 -12.96476 -12.78859 -12.67418 -12.52533 -12.29378 -12.17075 -11.78034 -11.69803 -11.37007 -11.04138 -10.92173 -10.79411 -10.48160 -10.43247 -9.97438 -9.05201 -8.18440 -6.39376 -0.17845 0.27400 1.32761 1.35610 1.42999 1.54193 1.94454 2.12651 2.32566 2.35286 2.82675 3.09352 3.71978 3.89059 3.90849 3.94398 3.99841 4.03534 4.16941 4.26945 4.38258 4.47694 4.54763 4.60326 4.67400 4.77704 4.81938 4.83781 4.84532 4.90631 5.08977 5.09935 5.14492 5.23849 5.29825 5.30944 5.32650 5.42916 5.56256 5.62660 5.70272 5.95308 6.02224 6.36521 6.47033 6.65043 7.20554 7.25928 7.42911 8.85180 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.005051 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.091932 B = 5542.210706 C = 6186.024878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.493 3.507 3 O -0.579 6.579 4 N -0.658 5.658 5 C 0.117 3.883 6 C -0.095 4.095 7 C -0.103 4.103 8 C -0.056 4.056 9 C -0.102 4.102 10 C -0.133 4.133 11 C 0.488 3.512 12 O -0.530 6.530 13 O -0.345 6.345 14 C 0.215 3.785 15 C -0.532 4.532 16 H 0.055 0.945 17 C 0.029 3.971 18 N -0.885 5.885 19 Si 0.953 3.047 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.279 1.279 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.150 4.150 26 C -0.086 4.086 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.434 0.566 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -11.419 -13.159 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.283 3.717 3 O -0.457 6.457 4 N -0.306 5.306 5 C 0.022 3.978 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.057 4.057 9 C -0.158 4.158 10 C -0.135 4.135 11 C 0.335 3.665 12 O -0.423 6.423 13 O -0.261 6.261 14 C 0.181 3.819 15 C -0.570 4.570 16 H 0.073 0.927 17 C -0.174 4.174 18 N -0.521 5.521 19 Si 0.777 3.223 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.205 1.205 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.188 4.188 26 C -0.107 4.107 27 H 0.132 0.868 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.274 0.726 31 H 0.201 0.799 32 H 0.197 0.803 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.858 -10.745 -12.985 18.196 hybrid contribution 0.038 0.008 1.515 1.515 sum -6.820 -10.737 -11.470 17.128 Atomic orbital electron populations 1.21938 0.86315 1.06376 1.07131 1.22121 0.93052 0.82592 0.73919 1.90834 1.72048 1.33530 1.49325 1.43449 1.03876 1.10736 1.72555 1.17755 0.84638 0.97549 0.97844 1.21523 0.93703 0.98540 0.97681 1.21243 0.94293 0.98087 0.98486 1.20313 0.97247 0.92871 0.95303 1.20820 0.89784 1.02726 1.02465 1.19364 0.93893 0.97385 1.02820 1.21441 0.85230 0.82483 0.77389 1.90642 1.17595 1.78324 1.55722 1.86589 1.43776 1.29099 1.66587 1.21441 0.88109 0.82130 0.90248 1.21089 0.93953 1.46559 0.95367 0.92726 1.25814 0.95040 0.93810 1.02765 1.70232 1.01582 1.45489 1.34800 0.85710 0.77746 0.79034 0.79793 1.18443 1.20284 1.20511 1.22967 0.96876 0.95462 0.99916 1.22464 0.95446 0.95318 1.01235 1.23420 0.99357 0.98000 0.98046 1.21264 0.93470 0.99146 0.96771 0.86839 0.89573 0.85405 0.72553 0.79949 0.80325 0.92104 0.88410 0.92768 0.92973 0.92004 0.92909 0.89893 0.89147 0.92737 0.92005 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.32 71.24 0.74 -1.50 16 2 C 0.49 13.24 7.67 87.66 0.67 13.91 16 3 O -0.58 -23.82 14.76 -3.05 -0.05 -23.87 16 4 N -0.66 -14.28 5.34 -303.60 -1.62 -15.91 16 5 C 0.12 3.44 6.28 38.11 0.24 3.68 16 6 C -0.09 -1.97 9.95 22.45 0.22 -1.74 16 7 C -0.10 -2.37 9.64 22.21 0.21 -2.16 16 8 C -0.06 -1.93 5.92 -19.58 -0.12 -2.04 16 9 C -0.10 -3.30 8.47 71.24 0.60 -2.69 16 10 C -0.13 -5.92 5.87 -20.11 -0.12 -6.04 16 11 C 0.49 26.39 7.32 70.33 0.51 26.90 16 12 O -0.53 -29.32 12.05 19.93 0.24 -29.08 16 13 O -0.34 -20.30 8.59 -56.16 -0.48 -20.78 16 14 C 0.21 12.02 0.57 -11.01 -0.01 12.02 16 15 C -0.53 -31.75 7.63 25.60 0.20 -31.55 16 16 H 0.05 3.28 7.81 -2.91 -0.02 3.26 16 17 C 0.03 1.70 5.43 84.65 0.46 2.16 16 18 N -0.88 -54.19 12.60 21.45 0.27 -53.92 16 19 Si 0.95 46.09 29.54 68.60 2.03 48.12 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 23 C -0.11 -5.74 7.50 31.12 0.23 -5.50 16 24 C -0.11 -4.53 7.81 31.12 0.24 -4.29 16 25 C -0.15 -7.30 6.01 31.12 0.19 -7.11 16 26 C -0.09 -3.65 8.22 22.67 0.19 -3.46 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.43 4.56 8.82 -92.70 -0.82 3.74 16 31 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.18 2.42 8.01 -2.91 -0.02 2.40 16 33 H 0.06 2.14 8.00 -2.39 -0.02 2.13 16 34 H 0.10 2.19 7.96 -2.39 -0.02 2.17 16 35 H 0.05 2.08 6.52 -2.39 -0.02 2.06 16 36 H 0.26 15.17 8.32 -92.71 -0.77 14.40 16 37 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.05 2.77 8.10 -2.39 -0.02 2.75 16 39 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.05 2.70 8.09 -2.38 -0.02 2.68 16 42 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.11 5.50 6.00 -2.91 -0.02 5.48 16 Total: -1.00 -87.71 361.47 5.07 -82.64 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.22 Total: 22.22 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.47 Total: -9.43 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -1.35 Total: -69.82 kcal Atomic # 8 Polarization: -73.44 SS G_CDS: -0.29 Total: -73.73 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -87.71 5.07 -82.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.799 kcal (2) G-P(sol) polarization free energy of solvation -87.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds