Wall clock time and date at job start Tue Mar 31 2020 12:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21246 * 120.00059 * 2 1 4 4 C 1.47179 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.40043 * 120.51722 * 5.48302 * 4 2 1 6 6 C 1.39712 * 118.12596 * 180.02562 * 5 4 2 7 7 C 1.47744 * 120.48028 * 180.02562 * 6 5 4 8 8 O 1.21463 * 120.00305 * 186.83360 * 7 6 5 9 9 O 1.34708 * 119.99767 * 6.83759 * 7 6 5 10 10 C 1.45201 * 117.00327 * 174.47887 * 9 7 6 11 11 C 1.50695 * 112.84553 * 302.11301 * 10 9 7 12 12 H 1.08004 * 120.00284 * 124.19820 * 11 10 9 13 13 C 1.37883 * 119.99947 * 304.19520 * 11 10 9 14 14 N 1.31518 * 119.99896 * 184.67568 * 13 11 10 15 15 Si 1.86794 * 119.99794 * 4.67151 * 13 11 10 16 16 H 1.48499 * 109.47369 * 94.37258 * 15 13 11 17 17 H 1.48504 * 109.47288 * 214.37520 * 15 13 11 18 18 H 1.48503 * 109.47376 * 334.37228 * 15 13 11 19 19 C 1.53781 * 113.61798 * 170.91166 * 10 9 7 20 20 C 1.53955 * 87.01634 * 220.04781 * 19 10 9 21 21 C 1.53774 * 87.11481 * 25.36538 * 20 19 10 22 22 C 1.39757 * 119.03960 * 0.02562 * 6 5 4 23 23 C 1.50706 * 119.53424 * 179.97438 * 22 6 5 24 24 N 1.31747 * 120.93462 * 359.97438 * 22 6 5 25 25 C 1.31715 * 122.07605 * 359.97438 * 24 22 6 26 26 C 1.50702 * 119.56966 * 180.02562 * 25 24 22 27 27 H 1.09002 * 109.46815 * 269.99861 * 1 2 3 28 28 H 1.08999 * 109.46761 * 29.99894 * 1 2 3 29 29 H 1.08998 * 109.46846 * 149.99959 * 1 2 3 30 30 H 1.07995 * 120.93505 * 0.04015 * 5 4 2 31 31 H 0.96999 * 119.99471 * 180.02562 * 14 13 11 32 32 H 1.08994 * 113.61168 * 334.56368 * 19 10 9 33 33 H 1.08992 * 113.60882 * 105.47314 * 19 10 9 34 34 H 1.09002 * 113.53579 * 270.80669 * 20 19 10 35 35 H 1.09003 * 113.73938 * 139.94446 * 20 19 10 36 36 H 1.09005 * 113.61486 * 220.09233 * 21 20 19 37 37 H 1.08992 * 113.69512 * 89.19771 * 21 20 19 38 38 H 1.09000 * 109.47142 * 277.57655 * 23 22 6 39 39 H 1.08998 * 109.46794 * 37.57316 * 23 22 6 40 40 H 1.09002 * 109.47105 * 157.56998 * 23 22 6 41 41 H 1.09001 * 109.47009 * 97.66591 * 26 25 24 42 42 H 1.09003 * 109.47502 * 217.66219 * 26 25 24 43 43 H 1.09003 * 109.47298 * 337.66485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5584 -2.4909 -0.1164 6 6 2.3065 -3.6708 -0.1108 7 6 1.6377 -4.9828 -0.2305 8 8 2.2795 -6.0058 -0.1005 9 8 0.3161 -5.0444 -0.4839 10 6 -0.2509 -6.3617 -0.7108 11 6 0.4025 -7.0905 -1.8566 12 1 0.8334 -8.0683 -1.6992 13 6 0.4500 -6.5092 -3.1059 14 7 0.9371 -7.1815 -4.1260 15 14 -0.1774 -4.7667 -3.3497 16 1 0.9550 -3.8126 -3.2378 17 1 -0.7948 -4.6465 -4.6950 18 1 -1.1913 -4.4556 -2.3102 19 6 -1.7875 -6.3688 -0.7722 20 6 -1.7332 -7.6832 0.0277 21 6 -0.3740 -7.2079 0.5674 22 6 3.6967 -3.5921 0.0097 23 6 4.5145 -4.8579 0.0175 24 7 4.3023 -2.4270 0.1164 25 6 3.6372 -1.2901 0.1147 26 6 4.3876 0.0108 0.2396 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4826 -2.5160 -0.2077 31 1 0.9709 -6.7723 -5.0048 32 1 -2.2499 -5.5454 -0.2280 33 1 -2.1835 -6.4865 -1.7808 34 1 -1.6672 -8.5721 -0.5997 35 1 -2.5039 -7.7624 0.7944 36 1 0.3694 -8.0019 0.6387 37 1 -0.4478 -6.6143 1.4786 38 1 4.5133 -5.2850 1.0204 39 1 4.0832 -5.5734 -0.6826 40 1 5.5384 -4.6308 -0.2796 41 1 4.5353 0.4415 -0.7508 42 1 3.8139 0.7036 0.8552 43 1 5.3565 -0.1718 0.7046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:19 Heat of formation + Delta-G solvation = -56.685913 kcal Electronic energy + Delta-G solvation = -27534.791194 eV Core-core repulsion = 23739.580294 eV Total energy + Delta-G solvation = -3795.210900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98979 -39.70620 -38.84654 -37.32835 -34.82833 -33.45615 -33.34579 -32.43946 -30.37004 -28.95648 -27.59114 -26.58655 -24.98346 -23.65906 -23.11305 -22.41911 -21.23141 -19.66272 -18.64867 -17.67932 -16.94176 -16.66983 -15.72705 -15.52745 -15.43088 -15.34738 -15.28420 -14.62707 -14.56582 -14.06625 -13.87368 -13.49187 -13.18614 -13.10185 -12.83641 -12.64258 -12.35160 -12.22009 -12.11240 -11.91670 -11.88313 -11.75403 -11.56787 -11.16526 -11.12757 -10.72973 -10.35609 -10.24849 -10.19218 -9.89508 -9.87195 -9.49680 -9.38633 -9.05625 -8.96130 -8.84192 -8.72675 -6.29766 -4.36291 0.34065 0.81061 2.17070 3.04738 3.19598 3.26278 3.35704 3.48057 3.79362 3.87705 4.13987 4.27938 4.50521 4.63356 4.70187 4.93073 5.00848 5.16458 5.20889 5.36637 5.42251 5.45138 5.51342 5.58342 5.61277 5.71007 5.72826 5.79365 5.84455 5.93108 5.95077 6.08287 6.18185 6.30106 6.31941 6.34053 6.61385 6.63984 6.78652 6.87711 7.15873 7.30082 7.31069 7.62981 7.80340 8.25992 8.68859 8.79604 9.30187 10.80345 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.005084 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.506947 B = 5506.129322 C = 5904.829171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.406 3.594 3 O -0.456 6.456 4 C -0.256 4.256 5 C 0.026 3.974 6 C -0.188 4.188 7 C 0.508 3.492 8 O -0.470 6.470 9 O -0.368 6.368 10 C 0.200 3.800 11 C -0.503 4.503 12 H 0.088 0.912 13 C 0.083 3.917 14 N -0.878 5.878 15 Si 0.870 3.130 16 H -0.281 1.281 17 H -0.295 1.295 18 H -0.242 1.242 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.147 4.147 22 C 0.225 3.775 23 C -0.117 4.117 24 N -0.501 5.501 25 C 0.211 3.789 26 C -0.111 4.111 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.267 0.733 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 11.103 9.328 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.285 3.715 3 O -0.333 6.333 4 C -0.259 4.259 5 C 0.001 3.999 6 C -0.191 4.191 7 C 0.350 3.650 8 O -0.357 6.357 9 O -0.287 6.287 10 C 0.166 3.834 11 C -0.540 4.540 12 H 0.106 0.894 13 C -0.123 4.123 14 N -0.514 5.514 15 Si 0.698 3.302 16 H -0.207 1.207 17 H -0.222 1.222 18 H -0.166 1.166 19 C -0.160 4.160 20 C -0.164 4.164 21 C -0.185 4.185 22 C 0.088 3.912 23 C -0.173 4.173 24 N -0.211 5.211 25 C 0.072 3.928 26 C -0.167 4.167 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.174 0.826 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.483 11.297 9.260 14.615 hybrid contribution -1.207 0.668 -0.533 1.479 sum -0.724 11.965 8.727 14.827 Atomic orbital electron populations 1.22265 0.93386 1.05325 1.05037 1.22215 0.91636 0.86924 0.70720 1.90481 1.71530 1.34202 1.37058 1.21231 0.95493 0.95775 1.13404 1.22293 1.01303 0.90121 0.86205 1.20425 0.94712 0.93579 1.10383 1.20190 0.82156 0.87663 0.74965 1.90739 1.64920 1.35839 1.44220 1.86491 1.22295 1.40364 1.79535 1.21881 0.90194 0.76763 0.94557 1.20791 1.38116 1.04746 0.90360 0.89421 1.24986 0.93817 0.97782 0.95677 1.69902 1.43877 1.37166 1.00436 0.86950 0.80555 0.85171 0.77569 1.20748 1.22207 1.16595 1.23313 0.95723 0.96560 1.00442 1.22534 0.96734 0.98094 0.99055 1.23355 0.97580 1.00237 0.97284 1.21860 0.89949 0.94305 0.85081 1.21213 0.98773 0.92232 1.05094 1.67621 1.39634 0.97259 1.16587 1.21895 0.89736 0.94642 0.86513 1.21089 1.00060 0.91553 1.04019 0.88153 0.89067 0.89314 0.82608 0.92275 0.91555 0.91012 0.89599 0.92460 0.91131 0.91748 0.89212 0.86905 0.90942 0.89564 0.88311 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 9.88 36.01 0.36 -1.47 16 2 C 0.41 4.99 7.16 -30.68 -0.22 4.77 16 3 O -0.46 -6.26 14.10 5.59 0.08 -6.18 16 4 C -0.26 -3.66 5.88 -104.96 -0.62 -4.27 16 5 C 0.03 0.40 9.06 -38.36 -0.35 0.05 16 6 C -0.19 -3.42 5.88 -104.89 -0.62 -4.04 16 7 C 0.51 10.75 7.11 34.62 0.25 10.99 16 8 O -0.47 -10.74 11.89 -19.24 -0.23 -10.96 16 9 O -0.37 -7.91 6.70 -40.51 -0.27 -8.18 16 10 C 0.20 4.44 0.24 -90.96 -0.02 4.42 16 11 C -0.50 -13.39 7.36 -34.44 -0.25 -13.64 16 12 H 0.09 2.59 8.05 -52.48 -0.42 2.17 16 13 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 14 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 15 Si 0.87 20.87 25.17 -169.99 -4.28 16.60 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.24 -5.30 5.57 56.52 0.31 -4.99 16 19 C -0.12 -2.38 5.92 -25.83 -0.15 -2.53 16 20 C -0.13 -2.24 7.81 -25.83 -0.20 -2.44 16 21 C -0.15 -2.87 6.86 -25.92 -0.18 -3.04 16 22 C 0.23 3.92 6.83 -82.06 -0.56 3.36 16 23 C -0.12 -1.89 8.80 36.01 0.32 -1.57 16 24 N -0.50 -8.20 10.15 -5.02 -0.05 -8.26 16 25 C 0.21 3.14 6.83 -82.02 -0.56 2.58 16 26 C -0.11 -1.34 8.83 36.01 0.32 -1.02 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.78 6.34 -51.93 -0.33 0.45 16 30 H 0.16 2.11 6.03 -52.49 -0.32 1.80 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.45 7.43 -51.93 -0.39 1.07 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.11 2.13 5.93 -51.93 -0.31 1.82 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.17 5.90 -51.93 -0.31 0.86 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -30.88 349.16 -7.24 -38.12 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.94 Total: 4.26 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.59 Total: -5.66 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.72 Total: -33.25 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.42 Total: -25.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.28 Total: 16.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.88 -7.24 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.567 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds