Wall clock time and date at job start Tue Mar 31 2020 12:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21246 * 120.00059 * 2 1 4 4 C 1.47179 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.40043 * 120.51722 * 5.48302 * 4 2 1 6 6 C 1.39712 * 118.12596 * 180.02562 * 5 4 2 7 7 C 1.47744 * 120.48028 * 180.02562 * 6 5 4 8 8 O 1.21463 * 120.00305 * 186.83360 * 7 6 5 9 9 O 1.34708 * 119.99767 * 6.83759 * 7 6 5 10 10 C 1.45201 * 117.00327 * 174.47887 * 9 7 6 11 11 C 1.50695 * 112.84553 * 302.11301 * 10 9 7 12 12 H 1.08004 * 120.00284 * 124.19820 * 11 10 9 13 13 C 1.37883 * 119.99947 * 304.19520 * 11 10 9 14 14 N 1.31518 * 119.99896 * 184.67568 * 13 11 10 15 15 Si 1.86794 * 119.99794 * 4.67151 * 13 11 10 16 16 H 1.48499 * 109.47369 * 94.37258 * 15 13 11 17 17 H 1.48504 * 109.47288 * 214.37520 * 15 13 11 18 18 H 1.48503 * 109.47376 * 334.37228 * 15 13 11 19 19 C 1.53781 * 113.61798 * 170.91166 * 10 9 7 20 20 C 1.53955 * 87.01634 * 220.04781 * 19 10 9 21 21 C 1.53774 * 87.11481 * 25.36538 * 20 19 10 22 22 C 1.39757 * 119.03960 * 0.02562 * 6 5 4 23 23 C 1.50706 * 119.53424 * 179.97438 * 22 6 5 24 24 N 1.31747 * 120.93462 * 359.97438 * 22 6 5 25 25 C 1.31715 * 122.07605 * 359.97438 * 24 22 6 26 26 C 1.50702 * 119.56966 * 180.02562 * 25 24 22 27 27 H 1.09002 * 109.46815 * 269.99861 * 1 2 3 28 28 H 1.08999 * 109.46761 * 29.99894 * 1 2 3 29 29 H 1.08998 * 109.46846 * 149.99959 * 1 2 3 30 30 H 1.07995 * 120.93505 * 0.04015 * 5 4 2 31 31 H 0.96999 * 119.99471 * 180.02562 * 14 13 11 32 32 H 1.08994 * 113.61168 * 334.56368 * 19 10 9 33 33 H 1.08992 * 113.60882 * 105.47314 * 19 10 9 34 34 H 1.09002 * 113.53579 * 270.80669 * 20 19 10 35 35 H 1.09003 * 113.73938 * 139.94446 * 20 19 10 36 36 H 1.09005 * 113.61486 * 220.09233 * 21 20 19 37 37 H 1.08992 * 113.69512 * 89.19771 * 21 20 19 38 38 H 1.09000 * 109.47142 * 277.57655 * 23 22 6 39 39 H 1.08998 * 109.46794 * 37.57316 * 23 22 6 40 40 H 1.09002 * 109.47105 * 157.56998 * 23 22 6 41 41 H 1.09001 * 109.47009 * 97.66591 * 26 25 24 42 42 H 1.09003 * 109.47502 * 217.66219 * 26 25 24 43 43 H 1.09003 * 109.47298 * 337.66485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5584 -2.4909 -0.1164 6 6 2.3065 -3.6708 -0.1108 7 6 1.6377 -4.9828 -0.2305 8 8 2.2795 -6.0058 -0.1005 9 8 0.3161 -5.0444 -0.4839 10 6 -0.2509 -6.3617 -0.7108 11 6 0.4025 -7.0905 -1.8566 12 1 0.8334 -8.0683 -1.6992 13 6 0.4500 -6.5092 -3.1059 14 7 0.9371 -7.1815 -4.1260 15 14 -0.1774 -4.7667 -3.3497 16 1 0.9550 -3.8126 -3.2378 17 1 -0.7948 -4.6465 -4.6950 18 1 -1.1913 -4.4556 -2.3102 19 6 -1.7875 -6.3688 -0.7722 20 6 -1.7332 -7.6832 0.0277 21 6 -0.3740 -7.2079 0.5674 22 6 3.6967 -3.5921 0.0097 23 6 4.5145 -4.8579 0.0175 24 7 4.3023 -2.4270 0.1164 25 6 3.6372 -1.2901 0.1147 26 6 4.3876 0.0108 0.2396 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4826 -2.5160 -0.2077 31 1 0.9709 -6.7723 -5.0048 32 1 -2.2499 -5.5454 -0.2280 33 1 -2.1835 -6.4865 -1.7808 34 1 -1.6672 -8.5721 -0.5997 35 1 -2.5039 -7.7624 0.7944 36 1 0.3694 -8.0019 0.6387 37 1 -0.4478 -6.6143 1.4786 38 1 4.5133 -5.2850 1.0204 39 1 4.0832 -5.5734 -0.6826 40 1 5.5384 -4.6308 -0.2796 41 1 4.5353 0.4415 -0.7508 42 1 3.8139 0.7036 0.8552 43 1 5.3565 -0.1718 0.7046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:18 Heat of formation + Delta-G solvation = -74.700276 kcal Electronic energy + Delta-G solvation = -27535.572356 eV Core-core repulsion = 23739.580294 eV Total energy + Delta-G solvation = -3795.992062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24618 -41.21498 -40.00917 -38.89964 -36.45606 -34.66845 -34.57941 -34.50943 -31.28995 -30.13685 -28.93044 -28.30059 -26.54631 -25.21095 -24.40189 -23.71463 -22.56055 -20.87355 -20.43317 -19.24365 -18.34527 -18.03213 -17.37952 -17.04885 -16.71711 -16.65614 -16.56964 -16.07447 -15.65864 -15.49020 -15.33409 -14.93614 -14.76775 -14.52425 -14.17608 -13.71405 -13.47502 -13.43457 -13.28707 -13.10100 -13.03800 -13.00743 -12.96653 -12.91908 -12.85093 -12.34620 -11.95249 -11.85797 -11.66073 -11.57654 -11.16402 -11.09556 -10.97535 -10.65493 -10.53097 -10.46533 -10.17008 -8.41200 -6.51105 -0.85407 -0.43428 1.10704 1.28380 1.28462 1.43771 1.67466 1.92020 2.27877 2.51869 2.76203 2.95857 3.01755 3.36766 3.41198 3.51584 3.86783 3.91063 3.98590 4.10897 4.16550 4.22242 4.36365 4.47028 4.49738 4.60851 4.61779 4.62338 4.64771 4.68085 4.85023 4.87675 4.92511 4.98664 5.08230 5.13268 5.16092 5.17590 5.29461 5.36683 5.53593 5.65544 5.78213 6.27876 6.37371 6.55920 6.57951 7.01733 7.19967 8.73214 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.005084 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.506947 B = 5506.129322 C = 5904.829171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.409 3.591 3 O -0.471 6.471 4 C -0.254 4.254 5 C 0.034 3.966 6 C -0.214 4.214 7 C 0.503 3.497 8 O -0.500 6.500 9 O -0.361 6.361 10 C 0.180 3.820 11 C -0.499 4.499 12 H 0.036 0.964 13 C 0.028 3.972 14 N -0.932 5.932 15 Si 0.921 3.079 16 H -0.286 1.286 17 H -0.297 1.297 18 H -0.200 1.200 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.143 4.143 22 C 0.214 3.786 23 C -0.110 4.110 24 N -0.509 5.509 25 C 0.203 3.797 26 C -0.105 4.105 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.180 0.820 31 H 0.267 0.733 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 14.412 11.126 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.289 3.711 3 O -0.348 6.348 4 C -0.257 4.257 5 C 0.010 3.990 6 C -0.217 4.217 7 C 0.347 3.653 8 O -0.389 6.389 9 O -0.279 6.279 10 C 0.146 3.854 11 C -0.536 4.536 12 H 0.054 0.946 13 C -0.172 4.172 14 N -0.571 5.571 15 Si 0.746 3.254 16 H -0.213 1.213 17 H -0.225 1.225 18 H -0.122 1.122 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.181 4.181 22 C 0.077 3.923 23 C -0.166 4.166 24 N -0.220 5.220 25 C 0.065 3.935 26 C -0.162 4.162 27 H 0.142 0.858 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.197 0.803 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.790 14.611 11.086 18.428 hybrid contribution -0.375 -0.367 -1.024 1.150 sum -2.165 14.244 10.063 17.574 Atomic orbital electron populations 1.22322 0.90154 1.06272 1.06833 1.22554 0.93117 0.85531 0.69884 1.90485 1.72234 1.34322 1.37788 1.21558 0.95397 0.96608 1.12111 1.22533 1.02320 0.89336 0.84861 1.20301 0.95142 0.92978 1.13293 1.20732 0.81933 0.88600 0.74026 1.90742 1.65282 1.37272 1.45610 1.86446 1.22592 1.39210 1.79661 1.21945 0.91843 0.77337 0.94304 1.20839 1.37332 1.03237 0.92200 0.94594 1.25802 0.94261 1.01848 0.95333 1.70053 1.46723 1.39281 1.01044 0.86133 0.80827 0.79997 0.78462 1.21281 1.22459 1.12185 1.23342 0.92640 0.98568 1.00817 1.22473 0.96560 0.96675 0.99372 1.23349 0.98181 0.99398 0.97159 1.21928 0.89976 0.94887 0.85506 1.21077 0.99291 0.91547 1.04715 1.67661 1.39814 0.97334 1.17146 1.22480 0.90676 0.95039 0.85354 1.21136 1.00369 0.90130 1.04532 0.85761 0.87782 0.88673 0.80297 0.92451 0.87885 0.92045 0.91415 0.88076 0.93707 0.89172 0.88384 0.90138 0.89369 0.88945 0.87667 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.62 9.88 71.24 0.70 -1.92 16 2 C 0.41 8.57 7.16 28.04 0.20 8.77 16 3 O -0.47 -11.38 14.10 -2.92 -0.04 -11.43 16 4 C -0.25 -6.55 5.88 -20.09 -0.12 -6.66 16 5 C 0.03 0.97 9.06 23.06 0.21 1.18 16 6 C -0.21 -7.61 5.88 -20.04 -0.12 -7.73 16 7 C 0.50 21.23 7.11 70.34 0.50 21.73 16 8 O -0.50 -23.76 11.89 19.96 0.24 -23.52 16 9 O -0.36 -14.84 6.70 -56.18 -0.38 -15.22 16 10 C 0.18 7.84 0.24 -11.01 0.00 7.84 16 11 C -0.50 -27.56 7.36 25.60 0.19 -27.37 16 12 H 0.04 2.29 8.05 -2.91 -0.02 2.27 16 13 C 0.03 1.57 5.47 84.66 0.46 2.03 16 14 N -0.93 -57.53 13.96 21.45 0.30 -57.23 16 15 Si 0.92 42.60 25.17 68.60 1.73 44.32 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 17 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 18 H -0.20 -7.82 5.57 99.48 0.55 -7.26 16 19 C -0.12 -4.13 5.92 31.18 0.18 -3.94 16 20 C -0.11 -3.72 7.81 31.18 0.24 -3.48 16 21 C -0.14 -5.43 6.86 31.12 0.21 -5.21 16 22 C 0.21 7.42 6.83 42.94 0.29 7.71 16 23 C -0.11 -3.67 8.80 71.24 0.63 -3.04 16 24 N -0.51 -16.14 10.15 -169.80 -1.72 -17.87 16 25 C 0.20 5.64 6.83 42.98 0.29 5.93 16 26 C -0.11 -2.30 8.83 71.24 0.63 -1.67 16 27 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.17 6.34 -2.39 -0.02 1.16 16 30 H 0.18 4.10 6.03 -2.91 -0.02 4.09 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.06 2.32 7.43 -2.39 -0.02 2.30 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.04 1.90 8.09 -2.38 -0.02 1.88 16 37 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.08 3.25 5.93 -2.39 -0.01 3.24 16 40 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 42 H 0.11 2.21 5.90 -2.39 -0.01 2.19 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -71.33 349.16 5.52 -65.81 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.88 Total: 20.96 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.51 Total: -5.83 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.42 Total: -75.10 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.18 Total: -50.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.73 Total: 44.32 kcal Total: -71.33 5.52 -65.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.887 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds