Wall clock time and date at job start Tue Mar 31 2020 11:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21287 * 119.99610 * 2 1 4 4 N 1.34773 * 120.00009 * 179.97438 * 2 1 3 5 5 C 1.39955 * 119.99747 * 185.13503 * 4 2 1 6 6 C 1.38999 * 119.99813 * 326.15583 * 5 4 2 7 7 C 1.38216 * 120.23373 * 180.02562 * 6 5 4 8 8 C 1.38013 * 120.23016 * 0.24508 * 7 6 5 9 9 C 1.39625 * 119.98498 * 359.45864 * 8 7 6 10 10 C 1.47744 * 120.11169 * 180.24543 * 9 8 7 11 11 O 1.21479 * 119.99806 * 176.56571 * 10 9 8 12 12 O 1.34705 * 120.00223 * 356.56910 * 10 9 8 13 13 C 1.45198 * 116.99871 * 185.07793 * 12 10 9 14 14 C 1.50706 * 112.85042 * 293.38321 * 13 12 10 15 15 H 1.07997 * 119.99671 * 124.53994 * 14 13 12 16 16 C 1.37879 * 119.99798 * 304.54066 * 14 13 12 17 17 N 1.31515 * 120.00084 * 4.92988 * 16 14 13 18 18 Si 1.86800 * 119.99828 * 184.92575 * 16 14 13 19 19 H 1.48495 * 109.47015 * 90.00033 * 18 16 14 20 20 H 1.48500 * 109.47023 * 210.00187 * 18 16 14 21 21 H 1.48500 * 109.47021 * 330.00033 * 18 16 14 22 22 C 1.53789 * 113.61370 * 162.07777 * 13 12 10 23 23 C 1.53780 * 87.07846 * 220.01489 * 22 13 12 24 24 C 1.53780 * 87.08272 * 25.43721 * 23 22 13 25 25 C 1.38579 * 119.99844 * 146.17351 * 5 4 2 26 26 C 1.50702 * 120.11120 * 359.96109 * 25 5 4 27 27 H 1.08998 * 109.47248 * 270.00281 * 1 2 3 28 28 H 1.08997 * 109.47309 * 30.00101 * 1 2 3 29 29 H 1.09001 * 109.46961 * 150.00634 * 1 2 3 30 30 H 0.96994 * 120.00491 * 5.14141 * 4 2 1 31 31 H 1.07998 * 119.88548 * 0.02562 * 6 5 4 32 32 H 1.08007 * 119.88779 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.00214 * 179.69887 * 8 7 6 34 34 H 0.96992 * 120.00006 * 185.00174 * 17 16 14 35 35 H 1.08998 * 113.61286 * 334.56518 * 22 13 12 36 36 H 1.08996 * 113.61067 * 105.47118 * 22 13 12 37 37 H 1.08998 * 113.61618 * 270.87984 * 23 22 13 38 38 H 1.09006 * 113.68573 * 139.99147 * 23 22 13 39 39 H 1.09000 * 113.60824 * 220.01695 * 24 23 22 40 40 H 1.08990 * 113.69791 * 89.12448 * 24 23 22 41 41 H 1.08992 * 109.47667 * 97.48839 * 26 25 5 42 42 H 1.09001 * 109.46956 * 217.48819 * 26 25 5 43 43 H 1.09004 * 109.47091 * 337.48434 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5762 -1.1695 0.1090 6 6 4.3193 -0.1421 -0.4606 7 6 5.6976 -0.1398 -0.3568 8 6 6.3460 -1.1603 0.3087 9 6 5.6085 -2.1937 0.8897 10 6 6.2994 -3.2847 1.6075 11 8 5.6536 -4.1491 2.1655 12 8 7.6455 -3.3208 1.6433 13 6 8.2574 -4.4799 2.2680 14 6 7.9905 -4.5555 3.7493 15 1 7.5390 -5.4408 4.1721 16 6 8.3226 -3.4944 4.5647 17 7 8.7821 -2.3799 4.0391 18 14 8.1199 -3.6399 6.4159 19 1 9.3735 -4.1682 7.0112 20 1 7.8256 -2.3016 6.9883 21 1 6.9991 -4.5656 6.7199 22 6 9.7375 -4.6705 1.8964 23 6 9.4428 -6.1779 1.8203 24 6 7.9824 -5.7976 1.5244 25 6 4.2170 -2.1962 0.7840 26 6 3.4138 -3.3111 1.4029 27 1 -0.3633 0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5137 30 1 1.6989 -2.0055 -0.0744 31 1 3.8180 0.6572 -0.9861 32 1 6.2694 0.6611 -0.8019 33 1 7.4234 -1.1574 0.3833 34 1 9.0839 -1.6604 4.6152 35 1 10.0071 -4.2293 0.9369 36 1 10.4268 -4.4003 2.6963 37 1 9.5752 -6.6972 2.7694 38 1 9.9400 -6.6799 0.9902 39 1 7.2550 -6.4373 2.0241 40 1 7.7708 -5.6644 0.4636 41 1 3.3990 -4.1666 0.7277 42 1 3.8675 -3.6035 2.3498 43 1 2.3937 -2.9696 1.5789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:03 Heat of formation + Delta-G solvation = -65.585247 kcal Electronic energy + Delta-G solvation = -26999.668728 eV Core-core repulsion = 23204.071924 eV Total energy + Delta-G solvation = -3795.596804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66354 -39.41966 -38.28884 -36.81076 -34.87092 -34.22296 -32.27958 -32.09944 -31.03620 -28.92564 -26.74421 -26.13408 -24.59584 -23.96951 -22.88475 -21.53513 -20.89749 -19.63548 -18.56463 -17.93750 -17.04107 -16.60461 -15.75826 -15.49673 -15.31707 -15.10494 -14.82587 -14.39040 -14.33154 -14.03384 -13.86165 -13.38038 -13.18843 -12.96366 -12.88874 -12.54291 -12.28631 -11.91313 -11.80768 -11.63518 -11.63032 -11.12471 -11.09340 -10.94378 -10.87728 -10.51962 -10.29931 -10.27296 -9.94048 -9.87754 -9.81285 -9.12850 -8.76541 -8.56536 -8.53743 -8.39558 -7.96612 -6.08806 -4.20608 1.23618 1.46008 2.44444 2.95644 3.26941 3.34960 3.39015 3.51408 4.00723 4.30832 4.37643 4.52535 4.88143 5.04474 5.08617 5.17472 5.23990 5.34762 5.46969 5.55960 5.66207 5.67542 5.73818 5.82840 5.91943 5.95744 6.03000 6.19891 6.36445 6.45150 6.47273 6.50637 6.60205 6.62689 6.73916 6.86053 6.89067 7.07865 7.16287 7.23607 7.28722 7.53004 7.78503 7.94942 7.96843 8.34952 8.80859 9.21988 9.49916 10.95892 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.003874 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.070990 B = 7226.841062 C = 7661.538558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.530 6.530 4 N -0.667 5.667 5 C 0.115 3.885 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.067 4.067 9 C -0.096 4.096 10 C 0.507 3.493 11 O -0.503 6.503 12 O -0.330 6.330 13 C 0.244 3.756 14 C -0.514 4.514 15 H 0.067 0.933 16 C 0.076 3.924 17 N -0.859 5.859 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.160 4.160 25 C -0.051 4.051 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.410 0.590 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.262 0.738 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 1.497 -10.125 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.406 6.406 4 N -0.313 5.313 5 C 0.021 3.979 6 C -0.117 4.117 7 C -0.146 4.146 8 C -0.086 4.086 9 C -0.098 4.098 10 C 0.351 3.649 11 O -0.394 6.394 12 O -0.246 6.246 13 C 0.210 3.790 14 C -0.551 4.551 15 H 0.085 0.915 16 C -0.130 4.130 17 N -0.494 5.494 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.149 4.149 23 C -0.169 4.169 24 C -0.198 4.198 25 C -0.054 4.054 26 C -0.183 4.183 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.247 0.753 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.240 2.206 -9.890 15.134 hybrid contribution -0.327 -0.353 1.105 1.205 sum -11.568 1.852 -8.785 14.643 Atomic orbital electron populations 1.21883 0.90885 1.05067 1.05165 1.20980 0.90814 0.83217 0.75352 1.90720 1.70369 1.31352 1.48129 1.43539 1.05346 1.09821 1.72594 1.17344 0.82363 0.97517 1.00635 1.21395 0.93811 0.98157 0.98341 1.21010 0.93820 0.98976 1.00840 1.21579 1.01234 0.91998 0.93814 1.19259 0.92072 0.96725 1.01759 1.20526 0.82840 0.83740 0.77787 1.90623 1.66791 1.39204 1.42780 1.86517 1.18366 1.48430 1.71246 1.21155 0.88785 0.77594 0.91511 1.20950 1.42307 1.02251 0.89572 0.91481 1.25032 0.94474 0.94625 0.98845 1.70067 1.40127 1.04233 1.35022 0.86613 0.78687 0.77575 0.85413 1.20384 1.21150 1.19621 1.22971 0.98039 0.93808 1.00113 1.22525 0.96861 0.96947 1.00543 1.23552 0.96618 1.00635 0.99000 1.19753 0.92856 0.96782 0.95979 1.21144 0.97545 0.95271 1.04333 0.88454 0.88602 0.89972 0.75306 0.84273 0.85346 0.84077 0.92830 0.92190 0.91028 0.90227 0.92970 0.91778 0.92232 0.91020 0.86904 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.31 36.01 0.37 -0.70 16 2 C 0.51 5.82 7.79 -10.99 -0.09 5.73 16 3 O -0.53 -8.31 14.44 5.55 0.08 -8.22 16 4 N -0.67 -7.61 4.75 -9.89 -0.05 -7.66 16 5 C 0.11 1.74 6.30 -83.74 -0.53 1.22 16 6 C -0.10 -1.50 8.71 -39.31 -0.34 -1.84 16 7 C -0.13 -1.97 10.02 -39.67 -0.40 -2.37 16 8 C -0.07 -1.21 9.61 -39.15 -0.38 -1.59 16 9 C -0.10 -1.91 5.87 -105.01 -0.62 -2.53 16 10 C 0.51 11.92 7.42 34.62 0.26 12.18 16 11 O -0.50 -12.37 11.74 -19.25 -0.23 -12.60 16 12 O -0.33 -8.29 8.64 -40.50 -0.35 -8.64 16 13 C 0.24 6.04 0.54 -90.95 -0.05 5.99 16 14 C -0.51 -14.01 7.11 -34.44 -0.24 -14.26 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.08 2.09 5.43 -17.82 -0.10 2.00 16 17 N -0.86 -24.21 12.67 55.43 0.70 -23.51 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -2.48 7.50 -25.92 -0.19 -2.68 16 23 C -0.13 -2.57 7.80 -25.92 -0.20 -2.77 16 24 C -0.16 -3.47 6.53 -25.92 -0.17 -3.64 16 25 C -0.05 -0.88 5.93 -104.01 -0.62 -1.50 16 26 C -0.13 -1.97 8.48 36.01 0.31 -1.67 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.41 3.36 7.64 -40.82 -0.31 3.05 16 31 H 0.14 2.10 6.10 -52.49 -0.32 1.78 16 32 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.14 2.57 7.61 -52.49 -0.40 2.17 16 34 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.69 8.10 -51.93 -0.42 1.27 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.43 8.09 -51.93 -0.42 1.01 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.11 2.16 5.62 -51.93 -0.29 1.87 16 43 H 0.05 0.60 6.78 -51.93 -0.35 0.24 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.98 357.73 -8.32 -41.31 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.87 Total: 5.99 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.99 Total: -8.43 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.66 Total: -31.17 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.50 Total: -29.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.98 -8.32 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.279 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds