Wall clock time and date at job start Tue Mar 31 2020 11:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21287 * 119.99610 * 2 1 4 4 N 1.34773 * 120.00009 * 179.97438 * 2 1 3 5 5 C 1.39955 * 119.99747 * 185.13503 * 4 2 1 6 6 C 1.38999 * 119.99813 * 326.15583 * 5 4 2 7 7 C 1.38216 * 120.23373 * 180.02562 * 6 5 4 8 8 C 1.38013 * 120.23016 * 0.24508 * 7 6 5 9 9 C 1.39625 * 119.98498 * 359.45864 * 8 7 6 10 10 C 1.47744 * 120.11169 * 180.24543 * 9 8 7 11 11 O 1.21479 * 119.99806 * 176.56571 * 10 9 8 12 12 O 1.34705 * 120.00223 * 356.56910 * 10 9 8 13 13 C 1.45198 * 116.99871 * 185.07793 * 12 10 9 14 14 C 1.50706 * 112.85042 * 293.38321 * 13 12 10 15 15 H 1.07997 * 119.99671 * 124.53994 * 14 13 12 16 16 C 1.37879 * 119.99798 * 304.54066 * 14 13 12 17 17 N 1.31515 * 120.00084 * 4.92988 * 16 14 13 18 18 Si 1.86800 * 119.99828 * 184.92575 * 16 14 13 19 19 H 1.48495 * 109.47015 * 90.00033 * 18 16 14 20 20 H 1.48500 * 109.47023 * 210.00187 * 18 16 14 21 21 H 1.48500 * 109.47021 * 330.00033 * 18 16 14 22 22 C 1.53789 * 113.61370 * 162.07777 * 13 12 10 23 23 C 1.53780 * 87.07846 * 220.01489 * 22 13 12 24 24 C 1.53780 * 87.08272 * 25.43721 * 23 22 13 25 25 C 1.38579 * 119.99844 * 146.17351 * 5 4 2 26 26 C 1.50702 * 120.11120 * 359.96109 * 25 5 4 27 27 H 1.08998 * 109.47248 * 270.00281 * 1 2 3 28 28 H 1.08997 * 109.47309 * 30.00101 * 1 2 3 29 29 H 1.09001 * 109.46961 * 150.00634 * 1 2 3 30 30 H 0.96994 * 120.00491 * 5.14141 * 4 2 1 31 31 H 1.07998 * 119.88548 * 0.02562 * 6 5 4 32 32 H 1.08007 * 119.88779 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.00214 * 179.69887 * 8 7 6 34 34 H 0.96992 * 120.00006 * 185.00174 * 17 16 14 35 35 H 1.08998 * 113.61286 * 334.56518 * 22 13 12 36 36 H 1.08996 * 113.61067 * 105.47118 * 22 13 12 37 37 H 1.08998 * 113.61618 * 270.87984 * 23 22 13 38 38 H 1.09006 * 113.68573 * 139.99147 * 23 22 13 39 39 H 1.09000 * 113.60824 * 220.01695 * 24 23 22 40 40 H 1.08990 * 113.69791 * 89.12448 * 24 23 22 41 41 H 1.08992 * 109.47667 * 97.48839 * 26 25 5 42 42 H 1.09001 * 109.46956 * 217.48819 * 26 25 5 43 43 H 1.09004 * 109.47091 * 337.48434 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5762 -1.1695 0.1090 6 6 4.3193 -0.1421 -0.4606 7 6 5.6976 -0.1398 -0.3568 8 6 6.3460 -1.1603 0.3087 9 6 5.6085 -2.1937 0.8897 10 6 6.2994 -3.2847 1.6075 11 8 5.6536 -4.1491 2.1655 12 8 7.6455 -3.3208 1.6433 13 6 8.2574 -4.4799 2.2680 14 6 7.9905 -4.5555 3.7493 15 1 7.5390 -5.4408 4.1721 16 6 8.3226 -3.4944 4.5647 17 7 8.7821 -2.3799 4.0391 18 14 8.1199 -3.6399 6.4159 19 1 9.3735 -4.1682 7.0112 20 1 7.8256 -2.3016 6.9883 21 1 6.9991 -4.5656 6.7199 22 6 9.7375 -4.6705 1.8964 23 6 9.4428 -6.1779 1.8203 24 6 7.9824 -5.7976 1.5244 25 6 4.2170 -2.1962 0.7840 26 6 3.4138 -3.3111 1.4029 27 1 -0.3633 0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5137 30 1 1.6989 -2.0055 -0.0744 31 1 3.8180 0.6572 -0.9861 32 1 6.2694 0.6611 -0.8019 33 1 7.4234 -1.1574 0.3833 34 1 9.0839 -1.6604 4.6152 35 1 10.0071 -4.2293 0.9369 36 1 10.4268 -4.4003 2.6963 37 1 9.5752 -6.6972 2.7694 38 1 9.9400 -6.6799 0.9902 39 1 7.2550 -6.4373 2.0241 40 1 7.7708 -5.6644 0.4636 41 1 3.3990 -4.1666 0.7277 42 1 3.8675 -3.6035 2.3498 43 1 2.3937 -2.9696 1.5789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:02 Heat of formation + Delta-G solvation = -84.640290 kcal Electronic energy + Delta-G solvation = -27000.495017 eV Core-core repulsion = 23204.071924 eV Total energy + Delta-G solvation = -3796.423093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84429 -41.02161 -39.69027 -38.47197 -36.17662 -35.85298 -34.36228 -33.42474 -32.02184 -29.90881 -28.23361 -27.88685 -26.36964 -25.55834 -24.42494 -22.84241 -22.11982 -21.00465 -20.44398 -19.30375 -18.39572 -18.02947 -17.06575 -16.89818 -16.84609 -16.73965 -16.52763 -16.15724 -15.69188 -15.46720 -15.15501 -14.77229 -14.58194 -14.36402 -14.02245 -13.52305 -13.45473 -13.30435 -13.20646 -13.02860 -12.95707 -12.91215 -12.87580 -12.78287 -12.32289 -12.26780 -12.12625 -11.78350 -11.60034 -11.44797 -11.01897 -10.89207 -10.74602 -10.41960 -10.36189 -9.84212 -9.17338 -8.17517 -6.34368 -0.17962 0.20547 1.33936 1.36485 1.45511 1.49828 1.92533 2.01937 2.35665 2.41239 2.83044 3.13058 3.74029 3.80018 3.88955 4.00932 4.02407 4.07394 4.14543 4.30496 4.34358 4.45593 4.56014 4.59503 4.66207 4.72041 4.77295 4.81274 4.86261 4.93814 5.08779 5.16299 5.18716 5.24163 5.32055 5.36558 5.40452 5.41841 5.50600 5.65580 5.75832 5.90364 6.05036 6.40044 6.45915 6.69142 7.08573 7.30511 7.46356 8.86542 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.003874 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.070990 B = 7226.841062 C = 7661.538558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.504 3.496 3 O -0.575 6.575 4 N -0.658 5.658 5 C 0.123 3.877 6 C -0.097 4.097 7 C -0.118 4.118 8 C -0.080 4.080 9 C -0.126 4.126 10 C 0.497 3.503 11 O -0.525 6.525 12 O -0.345 6.345 13 C 0.217 3.783 14 C -0.526 4.526 15 H 0.051 0.949 16 C 0.033 3.967 17 N -0.885 5.885 18 Si 0.944 3.056 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.153 4.153 25 C -0.058 4.058 26 C -0.119 4.119 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.428 0.572 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.130 0.870 34 H 0.262 0.738 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 1.596 -11.220 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.295 3.705 3 O -0.454 6.454 4 N -0.305 5.305 5 C 0.029 3.971 6 C -0.117 4.117 7 C -0.136 4.136 8 C -0.099 4.099 9 C -0.128 4.128 10 C 0.343 3.657 11 O -0.418 6.418 12 O -0.260 6.260 13 C 0.182 3.818 14 C -0.563 4.563 15 H 0.069 0.931 16 C -0.170 4.170 17 N -0.522 5.522 18 Si 0.769 3.231 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.191 4.191 25 C -0.061 4.061 26 C -0.175 4.175 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.267 0.733 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.109 2.268 -10.990 17.256 hybrid contribution 0.140 -0.335 1.385 1.432 sum -12.969 1.933 -9.605 16.253 Atomic orbital electron populations 1.21935 0.86330 1.07052 1.06609 1.21996 0.92797 0.82131 0.73562 1.90701 1.71685 1.32910 1.50143 1.43603 1.03702 1.11137 1.72081 1.17390 0.84349 0.96260 0.99140 1.21629 0.93862 0.98237 0.97938 1.21269 0.94163 0.98585 0.99579 1.21541 1.00772 0.92707 0.94903 1.19240 0.93371 0.96675 1.03510 1.21205 0.82374 0.84508 0.77644 1.90607 1.66888 1.40355 1.43917 1.86495 1.19537 1.48697 1.71308 1.21417 0.90484 0.78979 0.90879 1.21112 1.42038 1.01715 0.91452 0.93099 1.25668 0.94415 0.94415 1.02492 1.70162 1.41230 1.04679 1.36091 0.85775 0.78923 0.77252 0.81137 1.18829 1.21170 1.20038 1.22949 0.95998 0.96006 0.99863 1.22449 0.95112 0.95273 1.01935 1.23467 0.97793 0.98725 0.99079 1.19882 0.91973 0.97860 0.96390 1.21033 0.98825 0.95333 1.02330 0.87033 0.87977 0.86694 0.73252 0.83406 0.82427 0.85233 0.92933 0.90935 0.93132 0.90441 0.89043 0.93106 0.91058 0.90112 0.90720 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.31 71.24 0.73 -0.65 16 2 C 0.50 10.15 7.79 87.66 0.68 10.83 16 3 O -0.58 -17.02 14.44 -3.05 -0.04 -17.06 16 4 N -0.66 -13.20 4.75 -303.60 -1.44 -14.64 16 5 C 0.12 3.56 6.30 38.11 0.24 3.80 16 6 C -0.10 -2.85 8.71 22.45 0.20 -2.65 16 7 C -0.12 -3.52 10.02 22.21 0.22 -3.30 16 8 C -0.08 -2.95 9.61 22.55 0.22 -2.73 16 9 C -0.13 -5.15 5.87 -20.11 -0.12 -5.27 16 10 C 0.50 24.32 7.42 70.34 0.52 24.84 16 11 O -0.53 -26.98 11.74 19.91 0.23 -26.75 16 12 O -0.34 -17.95 8.64 -56.15 -0.49 -18.44 16 13 C 0.22 11.00 0.54 -11.01 -0.01 11.00 16 14 C -0.53 -29.59 7.11 25.60 0.18 -29.41 16 15 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 16 C 0.03 1.87 5.43 84.66 0.46 2.33 16 17 N -0.88 -51.36 12.67 21.45 0.27 -51.08 16 18 Si 0.94 44.81 29.54 68.60 2.03 46.84 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 C -0.11 -4.95 7.50 31.12 0.23 -4.71 16 23 C -0.11 -4.20 7.80 31.12 0.24 -3.96 16 24 C -0.15 -6.64 6.53 31.12 0.20 -6.44 16 25 C -0.06 -1.99 5.93 -19.47 -0.12 -2.10 16 26 C -0.12 -3.65 8.48 71.24 0.60 -3.04 16 27 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.43 5.48 7.64 -92.71 -0.71 4.77 16 31 H 0.15 4.19 6.10 -2.91 -0.02 4.17 16 32 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.13 4.95 7.61 -2.91 -0.02 4.93 16 34 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 35 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.05 2.44 8.10 -2.39 -0.02 2.42 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 39 H 0.05 2.30 8.09 -2.39 -0.02 2.28 16 40 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.07 2.94 5.62 -2.39 -0.01 2.93 16 43 H 0.08 1.89 6.78 -2.38 -0.02 1.87 16 Total: -1.00 -74.93 357.73 5.39 -69.54 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.33 Total: 23.05 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.50 Total: -11.45 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -1.17 Total: -65.73 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -0.30 Total: -62.24 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.93 5.39 -69.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.097 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds