Wall clock time and date at job start Tue Mar 31 2020 11:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21282 * 120.00424 * 2 1 4 4 N 1.34786 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.39959 * 119.99861 * 185.88162 * 4 2 1 6 6 C 1.38630 * 119.99559 * 33.74103 * 5 4 2 7 7 C 1.39507 * 119.77083 * 180.27086 * 6 5 4 8 8 C 1.47739 * 120.11729 * 179.74599 * 7 6 5 9 9 O 1.21466 * 119.99696 * 359.73041 * 8 7 6 10 10 O 1.34706 * 119.99908 * 179.72764 * 8 7 6 11 11 C 1.45213 * 116.99734 * 184.74482 * 10 8 7 12 12 C 1.50700 * 112.84738 * 303.64758 * 11 10 8 13 13 H 1.08008 * 119.99520 * 124.18525 * 12 11 10 14 14 C 1.37870 * 120.00195 * 304.19022 * 12 11 10 15 15 N 1.31513 * 120.00625 * 4.56461 * 14 12 11 16 16 Si 1.86801 * 119.99890 * 184.56977 * 14 12 11 17 17 H 1.48501 * 109.47453 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47457 * 300.00096 * 16 14 12 19 19 H 1.48507 * 109.46964 * 59.99960 * 16 14 12 20 20 C 1.53777 * 113.61437 * 74.84809 * 11 10 8 21 21 C 1.53950 * 87.02234 * 89.22605 * 20 11 10 22 22 C 1.53777 * 113.61257 * 172.45290 * 11 10 8 23 23 C 1.39671 * 119.76822 * 359.47787 * 7 6 5 24 24 C 1.37970 * 119.98988 * 0.27301 * 23 7 6 25 25 C 1.38259 * 120.22940 * 359.97438 * 24 23 7 26 26 C 1.50697 * 119.88528 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46697 * 299.99519 * 1 2 3 29 29 H 1.08993 * 109.47363 * 59.99219 * 1 2 3 30 30 H 0.96996 * 119.99746 * 5.88695 * 4 2 1 31 31 H 1.07999 * 120.11412 * 0.04391 * 6 5 4 32 32 H 0.97004 * 119.99630 * 354.78994 * 15 14 12 33 33 H 1.08995 * 113.61524 * 203.75340 * 20 11 10 34 34 H 1.09008 * 113.61112 * 334.64847 * 20 11 10 35 35 H 1.08997 * 113.54284 * 270.81569 * 21 20 11 36 36 H 1.09000 * 113.74581 * 139.93819 * 21 20 11 37 37 H 1.09003 * 113.61548 * 25.34848 * 22 11 10 38 38 H 1.09000 * 113.61361 * 156.16440 * 22 11 10 39 39 H 1.07995 * 120.00768 * 180.29770 * 23 7 6 40 40 H 1.07996 * 119.88367 * 180.02562 * 24 23 7 41 41 H 1.09005 * 109.47097 * 90.00332 * 26 25 24 42 42 H 1.09001 * 109.47425 * 209.99795 * 26 25 24 43 43 H 1.08991 * 109.46976 * 330.00259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5749 -1.1706 0.1237 6 6 4.2038 -0.2096 0.9001 7 6 5.5940 -0.2138 1.0161 8 6 6.2725 0.8101 1.8370 9 8 5.6201 1.6605 2.4085 10 8 7.6147 0.8005 1.9518 11 6 8.2058 1.7694 2.8576 12 6 7.8226 3.1890 2.5272 13 1 7.3576 3.8113 3.2776 14 6 8.0656 3.6932 1.2673 15 7 8.5486 2.9102 0.3274 16 14 7.7088 5.4886 0.8950 17 1 8.0541 5.7789 -0.5199 18 1 6.2669 5.7638 1.1196 19 1 8.5224 6.3507 1.7895 20 6 8.0275 1.4129 4.3428 21 6 9.3503 0.6333 4.2317 22 6 9.7160 1.5725 3.0702 23 6 6.3418 -1.1928 0.3580 24 6 5.7056 -2.1477 -0.4081 25 6 4.3281 -2.1402 -0.5270 26 6 3.6411 -3.1873 -1.3653 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.6996 -2.0050 -0.0871 31 1 3.6197 0.5419 1.4105 32 1 8.8048 1.9990 0.5396 33 1 8.0829 2.2743 5.0083 34 1 7.1619 0.7801 4.5391 35 1 9.2194 -0.4054 3.9285 36 1 9.9982 0.7419 5.1014 37 1 10.2117 1.0684 2.2405 38 1 10.2342 2.4781 3.3857 39 1 7.4179 -1.2026 0.4490 40 1 6.2854 -2.9041 -0.9159 41 1 3.4010 -4.0501 -0.7440 42 1 2.7231 -2.7737 -1.7829 43 1 4.3022 -3.4954 -2.1752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:05 Heat of formation + Delta-G solvation = -73.746515 kcal Electronic energy + Delta-G solvation = -27041.088261 eV Core-core repulsion = 23245.137557 eV Total energy + Delta-G solvation = -3795.950703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64978 -39.46888 -38.41659 -36.93604 -34.79496 -34.14045 -32.59290 -32.24619 -30.95687 -28.78108 -27.44118 -25.86767 -24.72472 -23.42983 -22.71247 -22.06492 -20.48803 -20.37295 -18.47936 -17.86038 -17.18488 -16.85203 -15.85131 -15.79015 -15.25689 -14.92883 -14.68454 -14.53168 -14.04647 -13.98846 -13.70593 -13.65111 -13.48820 -13.24612 -12.89478 -12.56129 -12.45194 -12.29697 -12.14595 -11.83171 -11.52137 -11.43677 -11.25436 -10.71719 -10.44595 -10.42072 -10.35408 -10.14950 -10.00592 -9.96260 -9.89139 -9.33578 -9.00262 -8.59687 -8.31836 -8.10668 -8.03434 -6.25989 -4.02541 1.06328 1.47220 2.51590 2.94610 3.38912 3.49776 3.56063 3.72457 3.82092 4.28420 4.58176 4.61747 4.79518 4.83948 4.88452 5.15886 5.17316 5.34802 5.38214 5.40005 5.47563 5.56533 5.58844 5.60015 5.71412 5.72206 5.79182 5.92817 6.12219 6.25556 6.32846 6.33478 6.47920 6.56042 6.67390 6.70758 6.72606 6.89930 7.08275 7.11487 7.26474 7.41447 7.71736 8.03811 8.25000 8.50872 8.92859 9.13506 9.70180 11.11822 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.004499 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.677493 B = 6222.717999 C = 7179.601273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.511 6.511 4 N -0.673 5.673 5 C 0.127 3.873 6 C -0.061 4.061 7 C -0.091 4.091 8 C 0.505 3.495 9 O -0.482 6.482 10 O -0.350 6.350 11 C 0.214 3.786 12 C -0.588 4.588 13 H 0.058 0.942 14 C 0.032 3.968 15 N -0.896 5.896 16 Si 1.062 2.938 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.075 4.075 24 C -0.116 4.116 25 C -0.096 4.096 26 C -0.113 4.113 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.408 0.592 31 H 0.146 0.854 32 H 0.279 0.721 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 -15.176 -1.807 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.289 3.711 3 O -0.385 6.385 4 N -0.320 5.320 5 C 0.034 3.966 6 C -0.082 4.082 7 C -0.093 4.093 8 C 0.347 3.653 9 O -0.369 6.369 10 O -0.267 6.267 11 C 0.180 3.820 12 C -0.626 4.626 13 H 0.076 0.924 14 C -0.175 4.175 15 N -0.532 5.532 16 Si 0.890 3.110 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.184 4.184 21 C -0.184 4.184 22 C -0.149 4.149 23 C -0.094 4.094 24 C -0.135 4.135 25 C -0.098 4.098 26 C -0.170 4.170 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.245 0.755 31 H 0.163 0.837 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.327 -12.973 -2.814 17.450 hybrid contribution -0.327 -1.434 1.187 1.890 sum -11.654 -14.407 -1.626 18.602 Atomic orbital electron populations 1.21841 0.90795 1.04257 1.05775 1.21080 0.90911 0.83364 0.75773 1.90873 1.70208 1.31004 1.46385 1.43617 1.05156 1.09741 1.73452 1.17285 0.82744 0.97994 0.98623 1.21169 0.93470 0.97826 0.95696 1.19472 0.92922 0.96529 1.00365 1.20474 0.82097 0.83116 0.79595 1.90768 1.66572 1.35161 1.44362 1.86349 1.20347 1.58072 1.61966 1.20872 0.90015 0.87135 0.84014 1.21953 1.44392 0.94774 1.01456 0.92388 1.25755 0.93892 1.05660 0.92224 1.70697 1.38588 1.09853 1.34024 0.83651 0.76620 0.74593 0.76093 1.20791 1.21297 1.21299 1.23390 0.95995 0.99324 0.99717 1.22957 0.98137 0.98480 0.98795 1.23000 0.96792 0.98583 0.96551 1.21498 1.00904 0.92599 0.94372 1.20788 0.92917 0.99573 1.00208 1.19785 0.93886 0.97833 0.98337 1.20743 1.00536 0.96746 0.98958 0.90509 0.88265 0.88446 0.75543 0.83668 0.90900 0.89973 0.93190 0.91178 0.92665 0.92394 0.89360 0.84336 0.85164 0.91045 0.91828 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.39 36.00 0.37 -0.84 16 2 C 0.50 6.49 7.66 -10.98 -0.08 6.40 16 3 O -0.51 -9.82 14.84 5.56 0.08 -9.74 16 4 N -0.67 -7.60 4.77 -9.89 -0.05 -7.65 16 5 C 0.13 1.92 6.24 -83.73 -0.52 1.39 16 6 C -0.06 -1.21 8.20 -38.96 -0.32 -1.53 16 7 C -0.09 -1.93 5.87 -105.01 -0.62 -2.54 16 8 C 0.51 12.97 7.44 34.61 0.26 13.23 16 9 O -0.48 -13.82 14.74 -19.24 -0.28 -14.10 16 10 O -0.35 -9.03 7.74 -40.51 -0.31 -9.34 16 11 C 0.21 5.54 0.15 -90.96 -0.01 5.52 16 12 C -0.59 -17.24 6.68 -34.44 -0.23 -17.47 16 13 H 0.06 1.75 7.82 -52.48 -0.41 1.34 16 14 C 0.03 0.95 5.43 -17.82 -0.10 0.86 16 15 N -0.90 -27.52 13.51 55.43 0.75 -26.77 16 16 Si 1.06 26.97 29.91 -169.99 -5.08 21.88 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.15 -3.32 7.19 -25.83 -0.19 -3.50 16 21 C -0.15 -2.85 8.03 -25.83 -0.21 -3.06 16 22 C -0.11 -2.52 7.12 -25.92 -0.18 -2.71 16 23 C -0.07 -1.32 9.61 -39.14 -0.38 -1.69 16 24 C -0.12 -1.60 9.67 -39.67 -0.38 -1.99 16 25 C -0.10 -1.23 5.90 -104.35 -0.62 -1.85 16 26 C -0.11 -0.92 9.46 36.00 0.34 -0.58 16 27 H 0.08 0.30 7.92 -51.93 -0.41 -0.11 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 2.79 7.62 -40.82 -0.31 2.48 16 31 H 0.15 3.19 6.06 -52.49 -0.32 2.87 16 32 H 0.28 8.48 6.03 -40.82 -0.25 8.23 16 33 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 34 H 0.05 1.13 8.04 -51.92 -0.42 0.71 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.09 1.99 8.09 -51.93 -0.42 1.57 16 39 H 0.14 2.39 7.61 -52.49 -0.40 1.99 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.46 7.13 -51.93 -0.37 0.09 16 43 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -38.00 361.28 -8.22 -46.22 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.90 Total: 4.40 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.86 Total: -10.34 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.70 Total: -34.42 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.51 Total: -33.18 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -5.08 Total: 21.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.00 -8.22 -46.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.531 kcal (2) G-P(sol) polarization free energy of solvation -38.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds