Wall clock time and date at job start Tue Mar 31 2020 11:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21282 * 120.00424 * 2 1 4 4 N 1.34786 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.39959 * 119.99861 * 185.88162 * 4 2 1 6 6 C 1.38630 * 119.99559 * 33.74103 * 5 4 2 7 7 C 1.39507 * 119.77083 * 180.27086 * 6 5 4 8 8 C 1.47739 * 120.11729 * 179.74599 * 7 6 5 9 9 O 1.21466 * 119.99696 * 359.73041 * 8 7 6 10 10 O 1.34706 * 119.99908 * 179.72764 * 8 7 6 11 11 C 1.45213 * 116.99734 * 184.74482 * 10 8 7 12 12 C 1.50700 * 112.84738 * 303.64758 * 11 10 8 13 13 H 1.08008 * 119.99520 * 124.18525 * 12 11 10 14 14 C 1.37870 * 120.00195 * 304.19022 * 12 11 10 15 15 N 1.31513 * 120.00625 * 4.56461 * 14 12 11 16 16 Si 1.86801 * 119.99890 * 184.56977 * 14 12 11 17 17 H 1.48501 * 109.47453 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47457 * 300.00096 * 16 14 12 19 19 H 1.48507 * 109.46964 * 59.99960 * 16 14 12 20 20 C 1.53777 * 113.61437 * 74.84809 * 11 10 8 21 21 C 1.53950 * 87.02234 * 89.22605 * 20 11 10 22 22 C 1.53777 * 113.61257 * 172.45290 * 11 10 8 23 23 C 1.39671 * 119.76822 * 359.47787 * 7 6 5 24 24 C 1.37970 * 119.98988 * 0.27301 * 23 7 6 25 25 C 1.38259 * 120.22940 * 359.97438 * 24 23 7 26 26 C 1.50697 * 119.88528 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46697 * 299.99519 * 1 2 3 29 29 H 1.08993 * 109.47363 * 59.99219 * 1 2 3 30 30 H 0.96996 * 119.99746 * 5.88695 * 4 2 1 31 31 H 1.07999 * 120.11412 * 0.04391 * 6 5 4 32 32 H 0.97004 * 119.99630 * 354.78994 * 15 14 12 33 33 H 1.08995 * 113.61524 * 203.75340 * 20 11 10 34 34 H 1.09008 * 113.61112 * 334.64847 * 20 11 10 35 35 H 1.08997 * 113.54284 * 270.81569 * 21 20 11 36 36 H 1.09000 * 113.74581 * 139.93819 * 21 20 11 37 37 H 1.09003 * 113.61548 * 25.34848 * 22 11 10 38 38 H 1.09000 * 113.61361 * 156.16440 * 22 11 10 39 39 H 1.07995 * 120.00768 * 180.29770 * 23 7 6 40 40 H 1.07996 * 119.88367 * 180.02562 * 24 23 7 41 41 H 1.09005 * 109.47097 * 90.00332 * 26 25 24 42 42 H 1.09001 * 109.47425 * 209.99795 * 26 25 24 43 43 H 1.08991 * 109.46976 * 330.00259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5749 -1.1706 0.1237 6 6 4.2038 -0.2096 0.9001 7 6 5.5940 -0.2138 1.0161 8 6 6.2725 0.8101 1.8370 9 8 5.6201 1.6605 2.4085 10 8 7.6147 0.8005 1.9518 11 6 8.2058 1.7694 2.8576 12 6 7.8226 3.1890 2.5272 13 1 7.3576 3.8113 3.2776 14 6 8.0656 3.6932 1.2673 15 7 8.5486 2.9102 0.3274 16 14 7.7088 5.4886 0.8950 17 1 8.0541 5.7789 -0.5199 18 1 6.2669 5.7638 1.1196 19 1 8.5224 6.3507 1.7895 20 6 8.0275 1.4129 4.3428 21 6 9.3503 0.6333 4.2317 22 6 9.7160 1.5725 3.0702 23 6 6.3418 -1.1928 0.3580 24 6 5.7056 -2.1477 -0.4081 25 6 4.3281 -2.1402 -0.5270 26 6 3.6411 -3.1873 -1.3653 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.6996 -2.0050 -0.0871 31 1 3.6197 0.5419 1.4105 32 1 8.8048 1.9990 0.5396 33 1 8.0829 2.2743 5.0083 34 1 7.1619 0.7801 4.5391 35 1 9.2194 -0.4054 3.9285 36 1 9.9982 0.7419 5.1014 37 1 10.2117 1.0684 2.2405 38 1 10.2342 2.4781 3.3857 39 1 7.4179 -1.2026 0.4490 40 1 6.2854 -2.9041 -0.9159 41 1 3.4010 -4.0501 -0.7440 42 1 2.7231 -2.7737 -1.7829 43 1 4.3022 -3.4954 -2.1752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:05 Heat of formation + Delta-G solvation = -99.076652 kcal Electronic energy + Delta-G solvation = -27042.186658 eV Core-core repulsion = 23245.137557 eV Total energy + Delta-G solvation = -3797.049101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89972 -41.27478 -39.76744 -38.75687 -36.16850 -35.97457 -34.52060 -33.72350 -31.95818 -29.75616 -28.70108 -27.85919 -26.57169 -25.03858 -24.16363 -23.61888 -21.89089 -21.59834 -20.34547 -19.66363 -18.86667 -18.08044 -17.36645 -17.20574 -16.74265 -16.57704 -16.27202 -15.94261 -15.76254 -15.55663 -15.30456 -15.00712 -14.69084 -14.57931 -14.45191 -13.99591 -13.47488 -13.31568 -13.23723 -13.19285 -12.97443 -12.77894 -12.74132 -12.48056 -12.37403 -12.35147 -12.05599 -11.98678 -11.82754 -11.62107 -11.29873 -11.06204 -10.98916 -10.54156 -10.21481 -9.88653 -9.24594 -8.60084 -6.35955 -0.32078 0.17653 1.40543 1.43137 1.49380 1.68362 1.77656 1.88948 2.14545 2.49483 2.74668 3.15319 3.62135 3.71272 3.79267 3.79997 3.86662 3.96054 4.10655 4.14584 4.22321 4.35087 4.44298 4.52310 4.60406 4.69335 4.70407 4.74938 4.85703 4.86151 4.94551 5.01892 5.05991 5.09397 5.19190 5.29367 5.32507 5.35098 5.36581 5.56480 5.65003 5.86269 6.08134 6.20287 6.36764 6.60791 7.10109 7.12714 7.42234 8.77828 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.004499 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.677493 B = 6222.717999 C = 7179.601273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.493 3.507 3 O -0.585 6.585 4 N -0.653 5.653 5 C 0.125 3.875 6 C -0.085 4.085 7 C -0.135 4.135 8 C 0.497 3.503 9 O -0.534 6.534 10 O -0.350 6.350 11 C 0.182 3.818 12 C -0.600 4.600 13 H 0.034 0.966 14 C -0.013 4.013 15 N -0.917 5.917 16 Si 1.098 2.902 17 H -0.277 1.277 18 H -0.296 1.296 19 H -0.256 1.256 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.081 4.081 24 C -0.104 4.104 25 C -0.070 4.070 26 C -0.113 4.113 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.434 0.566 31 H 0.106 0.894 32 H 0.271 0.729 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.177 0.823 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 -18.886 -3.199 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.284 3.716 3 O -0.464 6.464 4 N -0.302 5.302 5 C 0.031 3.969 6 C -0.105 4.105 7 C -0.136 4.136 8 C 0.342 3.658 9 O -0.424 6.424 10 O -0.266 6.266 11 C 0.147 3.853 12 C -0.637 4.637 13 H 0.053 0.947 14 C -0.215 4.215 15 N -0.555 5.555 16 Si 0.921 3.079 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.181 1.181 20 C -0.185 4.185 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.073 4.073 26 C -0.169 4.169 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.276 0.724 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.194 0.806 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.299 -16.760 -4.199 21.208 hybrid contribution -0.166 -0.405 1.592 1.651 sum -12.465 -17.164 -2.607 21.373 Atomic orbital electron populations 1.21897 0.85788 1.07453 1.06298 1.22249 0.93201 0.82452 0.73681 1.90861 1.72077 1.33728 1.49739 1.43555 1.03665 1.10798 1.72177 1.17400 0.84762 0.97175 0.97602 1.20988 0.92856 0.99018 0.97674 1.19324 0.93685 0.97637 1.02993 1.21427 0.81806 0.83401 0.79168 1.90713 1.67208 1.37678 1.46836 1.86326 1.20771 1.57567 1.61973 1.21240 0.92288 0.85883 0.85855 1.22167 1.43787 0.96782 1.01002 0.94743 1.26906 0.93560 1.08680 0.92401 1.70783 1.40612 1.09778 1.34289 0.83213 0.76291 0.71576 0.76843 1.20163 1.22331 1.18052 1.23365 0.97833 0.99838 0.97486 1.22814 0.95808 0.97965 0.98582 1.22940 0.94166 0.99507 0.97936 1.21574 1.00698 0.92831 0.94893 1.21288 0.93748 0.98774 0.98434 1.20405 0.93618 0.97084 0.96166 1.20942 1.01013 0.95888 0.99039 0.85970 0.88061 0.87387 0.72431 0.87581 0.91774 0.90070 0.94106 0.89766 0.88865 0.92590 0.89546 0.84720 0.80585 0.87790 0.90327 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.39 71.24 0.74 -1.13 16 2 C 0.49 12.63 7.66 87.65 0.67 13.30 16 3 O -0.59 -24.01 14.84 -3.04 -0.05 -24.06 16 4 N -0.65 -13.48 4.77 -303.59 -1.45 -14.93 16 5 C 0.13 3.68 6.24 38.11 0.24 3.92 16 6 C -0.08 -3.56 8.20 22.67 0.19 -3.37 16 7 C -0.13 -6.08 5.87 -20.11 -0.12 -6.20 16 8 C 0.50 27.57 7.44 70.33 0.52 28.09 16 9 O -0.53 -33.59 14.74 19.95 0.29 -33.30 16 10 O -0.35 -19.07 7.74 -56.16 -0.43 -19.51 16 11 C 0.18 9.84 0.15 -11.02 0.00 9.83 16 12 C -0.60 -37.09 6.68 25.60 0.17 -36.92 16 13 H 0.03 2.22 7.82 -2.91 -0.02 2.19 16 14 C -0.01 -0.83 5.43 84.65 0.46 -0.38 16 15 N -0.92 -58.62 13.51 21.44 0.29 -58.33 16 16 Si 1.10 56.41 29.91 68.60 2.05 58.46 16 17 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 18 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 C -0.15 -6.87 7.19 31.18 0.22 -6.64 16 21 C -0.11 -4.32 8.03 31.18 0.25 -4.07 16 22 C -0.11 -4.93 7.12 31.12 0.22 -4.70 16 23 C -0.08 -2.87 9.61 22.55 0.22 -2.66 16 24 C -0.10 -2.56 9.67 22.21 0.21 -2.35 16 25 C -0.07 -1.56 5.90 -19.69 -0.12 -1.67 16 26 C -0.11 -1.15 9.46 71.24 0.67 -0.47 16 27 H 0.12 0.35 7.92 -2.39 -0.02 0.33 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.43 4.09 7.62 -92.71 -0.71 3.38 16 31 H 0.11 5.23 6.06 -2.91 -0.02 5.22 16 32 H 0.27 17.22 6.03 -92.71 -0.56 16.66 16 33 H 0.08 3.72 8.09 -2.39 -0.02 3.70 16 34 H 0.04 1.93 8.04 -2.38 -0.02 1.91 16 35 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 38 H 0.09 3.92 8.09 -2.39 -0.02 3.91 16 39 H 0.13 4.75 7.61 -2.91 -0.02 4.73 16 40 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.08 0.64 7.13 -2.39 -0.02 0.63 16 43 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 Total: -1.00 -94.67 361.28 5.80 -88.86 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.54 Total: 18.23 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 4.56 Total: -15.43 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.16 Total: -73.26 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -0.19 Total: -76.86 kcal Atomic # 14 Polarization: 56.41 SS G_CDS: 2.05 Total: 58.46 kcal Total: -94.67 5.80 -88.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.212 kcal (2) G-P(sol) polarization free energy of solvation -94.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds