Wall clock time and date at job start Tue Mar 31 2020 11:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38282 * 119.93249 * 2 1 4 4 C 1.38116 * 120.06908 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.93029 * 0.02562 * 4 3 2 6 6 N 1.39926 * 120.06906 * 179.97438 * 5 4 3 7 7 C 1.46771 * 124.34609 * 354.18693 * 6 5 4 8 8 C 1.54482 * 105.46961 * 197.03876 * 7 6 5 9 9 C 1.54636 * 101.76585 * 334.58512 * 8 7 6 10 10 H 1.09000 * 110.59514 * 266.06551 * 9 8 7 11 11 O 1.45198 * 110.48379 * 143.47705 * 9 8 7 12 12 C 1.34234 * 116.99710 * 153.77373 * 11 9 8 13 13 O 1.20823 * 119.99581 * 359.97438 * 12 11 9 14 14 C 1.50692 * 119.99731 * 179.97438 * 12 11 9 15 15 C 1.53006 * 109.47004 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47375 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99561 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00040 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99888 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99804 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46891 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47489 * 300.00317 * 20 18 16 23 23 H 1.48507 * 109.46966 * 60.00175 * 20 18 16 24 24 C 1.34415 * 124.34972 * 174.21408 * 6 5 4 25 25 O 1.21284 * 124.94400 * 359.60329 * 24 6 5 26 26 C 1.38873 * 119.86010 * 0.25080 * 5 4 3 27 27 C 1.38114 * 119.92853 * 359.47418 * 26 5 4 28 28 H 1.08995 * 109.47144 * 90.00128 * 1 2 3 29 29 H 1.08998 * 109.46897 * 209.99871 * 1 2 3 30 30 H 1.09001 * 109.46898 * 329.99890 * 1 2 3 31 31 H 1.07998 * 119.96072 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.02912 * 180.02562 * 4 3 2 33 33 H 1.08999 * 110.24316 * 316.03484 * 7 6 5 34 34 H 1.08992 * 110.24480 * 77.95295 * 7 6 5 35 35 H 1.08996 * 110.96839 * 216.46608 * 8 7 6 36 36 H 1.08998 * 110.97267 * 92.70207 * 8 7 6 37 37 H 1.09001 * 109.47452 * 59.99893 * 14 12 11 38 38 H 1.09000 * 109.47821 * 299.99403 * 14 12 11 39 39 H 1.09001 * 109.46764 * 59.99887 * 15 14 12 40 40 H 1.09001 * 109.47363 * 300.00202 * 15 14 12 41 41 H 0.97004 * 120.00046 * 0.02562 * 19 18 16 42 42 H 1.07998 * 120.03527 * 179.75087 * 26 5 4 43 43 H 1.07994 * 119.96400 * 180.27266 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5782 1.2017 -0.0005 5 6 4.2740 -0.0002 -0.0016 6 7 5.6732 -0.0002 -0.0027 7 6 6.5012 1.2054 -0.1255 8 6 7.9087 0.7008 -0.5140 9 6 7.8980 -0.7355 0.0590 10 1 8.3293 -0.7522 1.0599 11 8 8.6201 -1.6384 -0.8193 12 6 9.1630 -2.7302 -0.2580 13 8 9.0392 -2.9246 0.9280 14 6 9.9267 -3.7133 -1.1072 15 6 10.4373 -4.8572 -0.2287 16 6 11.2016 -5.8401 -1.0777 17 1 11.3125 -5.6660 -2.1378 18 6 11.7593 -6.9615 -0.5011 19 7 11.6246 -7.1732 0.7899 20 14 12.7061 -8.1801 -1.5536 21 1 13.2017 -9.2903 -0.7009 22 1 11.8114 -8.7251 -2.6061 23 1 13.8585 -7.4934 -2.1906 24 6 6.4317 -1.1044 0.1081 25 8 6.0029 -2.2324 0.2291 26 6 3.5781 -1.2020 -0.0074 27 6 2.1970 -1.1985 -0.0011 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6553 2.1327 0.0004 32 1 4.1165 2.1380 -0.0001 33 1 6.1057 1.8568 -0.9048 34 1 6.5386 1.7358 0.8259 35 1 8.6836 1.3038 -0.0408 36 1 8.0334 0.6878 -1.5967 37 1 10.7726 -3.2093 -1.5747 38 1 9.2700 -4.1134 -1.8797 39 1 9.5916 -5.3613 0.2392 40 1 11.0942 -4.4570 0.5436 41 1 11.1327 -6.5405 1.3364 42 1 4.1163 -2.1382 -0.0123 43 1 1.6552 -2.1328 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:17 Heat of formation + Delta-G solvation = -122.375561 kcal Electronic energy + Delta-G solvation = -25634.064027 eV Core-core repulsion = 21836.004610 eV Total energy + Delta-G solvation = -3798.059417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63039 -41.38880 -39.83108 -38.13895 -37.63338 -36.06858 -34.48399 -33.09464 -32.01071 -31.54610 -28.88693 -27.70585 -27.10184 -24.69948 -24.22243 -23.31051 -22.28471 -21.95423 -20.94412 -19.43114 -18.94768 -18.64643 -18.14544 -17.48609 -17.19189 -16.84364 -16.27103 -15.89455 -15.62645 -15.38975 -15.19972 -15.03632 -14.84977 -14.66234 -14.58037 -14.35870 -14.12440 -13.88701 -13.66256 -13.30133 -13.11552 -13.05558 -12.91343 -12.71468 -12.49190 -12.28671 -12.18493 -12.15288 -12.02256 -11.89445 -11.67300 -11.09804 -10.82009 -10.77094 -10.58908 -9.99616 -8.92146 -8.74152 -6.46635 0.08009 0.35781 0.91652 1.07710 1.46410 1.53934 1.63952 1.76688 1.82591 2.58001 2.75844 2.87314 3.12819 3.17457 3.47345 3.75716 3.82610 3.86082 3.95526 4.06292 4.12671 4.22532 4.27074 4.28916 4.39867 4.42969 4.59311 4.65613 4.77066 4.81166 4.85649 4.87094 5.00262 5.09183 5.13358 5.16892 5.20924 5.22858 5.34638 5.46517 5.64147 5.83912 5.85019 6.03062 6.11951 6.43148 6.58179 6.68636 7.39019 8.65928 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.002421 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.864046 B =11562.224977 C =12414.178473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.091 4.091 4 C -0.140 4.140 5 C 0.136 3.864 6 N -0.551 5.551 7 C 0.092 3.908 8 C -0.106 4.106 9 C 0.044 3.956 10 H 0.117 0.883 11 O -0.331 6.331 12 C 0.465 3.535 13 O -0.536 6.536 14 C -0.086 4.086 15 C 0.024 3.976 16 C -0.620 4.620 17 H 0.071 0.929 18 C -0.045 4.045 19 N -0.937 5.937 20 Si 1.127 2.873 21 H -0.287 1.287 22 H -0.266 1.266 23 H -0.260 1.260 24 C 0.486 3.514 25 O -0.544 6.544 26 C -0.187 4.187 27 C -0.106 4.106 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.109 0.891 39 H -0.021 1.021 40 H -0.009 1.009 41 H 0.251 0.749 42 H 0.115 0.885 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 27.852 -5.714 33.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.160 4.160 5 C 0.043 3.957 6 N -0.275 5.275 7 C -0.028 4.028 8 C -0.143 4.143 9 C -0.015 4.015 10 H 0.135 0.865 11 O -0.247 6.247 12 C 0.309 3.691 13 O -0.424 6.424 14 C -0.124 4.124 15 C -0.014 4.014 16 C -0.657 4.657 17 H 0.089 0.911 18 C -0.241 4.241 19 N -0.574 5.574 20 Si 0.946 3.054 21 H -0.213 1.213 22 H -0.191 1.191 23 H -0.184 1.184 24 C 0.274 3.726 25 O -0.421 6.421 26 C -0.207 4.207 27 C -0.124 4.124 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.127 0.873 39 H -0.003 1.003 40 H 0.010 0.990 41 H 0.061 0.939 42 H 0.132 0.868 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.639 25.846 -5.237 31.727 hybrid contribution -0.935 0.532 0.819 1.352 sum -18.575 26.378 -4.418 32.563 Atomic orbital electron populations 1.20803 0.88996 1.03673 1.03117 1.20303 0.97816 0.92671 1.00714 1.21278 0.93082 0.98656 0.97879 1.21113 0.94952 0.95894 1.04083 1.18026 0.80850 0.95399 1.01424 1.45791 1.04355 1.09678 1.67687 1.22806 0.88175 0.85655 1.06136 1.22965 0.98366 0.87957 1.05060 1.23688 0.87573 0.92284 0.97928 0.86497 1.86662 1.63326 1.33250 1.41431 1.24586 0.75772 0.80719 0.87982 1.90625 1.58028 1.74722 1.19041 1.21398 0.99990 0.92862 0.98104 1.18966 0.94448 0.93010 0.94934 1.22427 1.37222 1.09218 0.96880 0.91083 1.27725 0.97616 1.00904 0.97887 1.70901 1.40939 1.38775 1.06818 0.82848 0.75727 0.73440 0.73403 1.21284 1.19086 1.18445 1.21728 0.90764 0.84435 0.75650 1.90662 1.78599 1.23906 1.48983 1.21566 0.95905 0.98175 1.05062 1.21091 0.92583 0.99193 0.99569 0.90322 0.91641 0.89720 0.81951 0.81882 0.85241 0.86629 0.83747 0.86810 0.85547 0.87322 1.00309 0.99025 0.93931 0.86767 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.11 -1.90 5.88 -19.84 -0.12 -2.02 16 3 C -0.09 -1.19 9.69 22.25 0.22 -0.98 16 4 C -0.14 -2.07 9.40 22.39 0.21 -1.86 16 5 C 0.14 3.20 6.60 38.15 0.25 3.45 16 6 N -0.55 -12.49 3.14 -627.69 -1.97 -14.46 16 7 C 0.09 0.89 6.27 86.83 0.54 1.43 16 8 C -0.11 -1.24 6.92 31.66 0.22 -1.03 16 9 C 0.04 1.18 3.22 30.59 0.10 1.28 16 10 H 0.12 3.31 7.26 -2.39 -0.02 3.29 16 11 O -0.33 -11.10 9.95 -48.68 -0.48 -11.58 16 12 C 0.46 19.73 7.95 71.23 0.57 20.30 16 13 O -0.54 -26.83 15.25 21.97 0.33 -26.50 16 14 C -0.09 -3.73 5.75 29.85 0.17 -3.56 16 15 C 0.02 1.34 3.57 29.85 0.11 1.44 16 16 C -0.62 -36.21 9.11 25.60 0.23 -35.98 16 17 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 18 C -0.04 -2.67 5.46 84.66 0.46 -2.21 16 19 N -0.94 -61.71 13.65 21.45 0.29 -61.41 16 20 Si 1.13 50.87 29.90 68.60 2.05 52.92 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 24 C 0.49 15.80 7.61 87.90 0.67 16.46 16 25 O -0.54 -23.80 14.82 0.87 0.01 -23.78 16 26 C -0.19 -5.44 9.28 22.39 0.21 -5.23 16 27 C -0.11 -2.43 9.69 22.25 0.22 -2.22 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.16 1.10 7.02 -2.91 -0.02 1.08 16 33 H 0.13 0.43 7.70 -2.39 -0.02 0.41 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 1.18 8.11 -2.39 -0.02 1.16 16 37 H 0.13 4.66 8.14 -2.39 -0.02 4.64 16 38 H 0.11 4.41 8.14 -2.39 -0.02 4.39 16 39 H -0.02 -1.37 7.97 -2.39 -0.02 -1.39 16 40 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 41 H 0.25 17.20 7.22 -92.71 -0.67 16.53 16 42 H 0.11 4.25 5.27 -2.91 -0.02 4.23 16 43 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -90.37 363.69 6.12 -84.25 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.12 Total: 11.69 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 4.77 Total: -11.13 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.68 Total: -75.88 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -0.14 Total: -61.87 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -90.37 6.12 -84.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.124 kcal (2) G-P(sol) polarization free energy of solvation -90.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds