Wall clock time and date at job start Tue Mar 31 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38277 * 119.93207 * 2 1 4 4 C 1.38109 * 120.07206 * 179.76915 * 3 2 1 5 5 C 1.38879 * 119.92785 * 0.50423 * 4 3 2 6 6 N 1.39925 * 120.07248 * 179.72535 * 5 4 3 7 7 C 1.46754 * 124.34878 * 174.29452 * 6 5 4 8 8 C 1.54478 * 105.47322 * 162.98809 * 7 6 5 9 9 C 1.54629 * 101.76692 * 25.41617 * 8 7 6 10 10 H 1.08998 * 110.48570 * 94.00859 * 9 8 7 11 11 O 1.45201 * 110.48955 * 216.52829 * 9 8 7 12 12 C 1.34231 * 116.99804 * 210.00147 * 11 9 8 13 13 O 1.20823 * 120.00073 * 359.97438 * 12 11 9 14 14 C 1.50695 * 119.99607 * 179.97438 * 12 11 9 15 15 C 1.53004 * 109.46960 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00192 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00229 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46935 * 89.99772 * 20 18 16 22 22 H 1.48493 * 109.47435 * 209.99581 * 20 18 16 23 23 H 1.48496 * 109.47243 * 330.00096 * 20 18 16 24 24 C 1.34420 * 124.34730 * 353.99887 * 6 5 4 25 25 O 1.21290 * 124.94402 * 0.39197 * 24 6 5 26 26 C 1.38875 * 119.85840 * 359.75215 * 5 4 3 27 27 C 1.38119 * 119.92659 * 359.97438 * 26 5 4 28 28 H 1.08998 * 109.47104 * 269.72463 * 1 2 3 29 29 H 1.09007 * 109.46644 * 29.72364 * 1 2 3 30 30 H 1.09000 * 109.47024 * 149.71805 * 1 2 3 31 31 H 1.08001 * 119.95993 * 0.02562 * 3 2 1 32 32 H 1.07992 * 120.03913 * 180.25838 * 4 3 2 33 33 H 1.08997 * 110.25121 * 281.99026 * 7 6 5 34 34 H 1.09005 * 110.25014 * 43.99040 * 7 6 5 35 35 H 1.08999 * 110.97539 * 143.53982 * 8 7 6 36 36 H 1.09002 * 110.96934 * 267.26163 * 8 7 6 37 37 H 1.09000 * 109.47211 * 299.99691 * 14 12 11 38 38 H 1.09002 * 109.47672 * 59.99418 * 14 12 11 39 39 H 1.08996 * 109.46852 * 299.99473 * 15 14 12 40 40 H 1.08995 * 109.47169 * 59.99689 * 15 14 12 41 41 H 0.96994 * 119.99642 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.03701 * 179.97438 * 26 5 4 43 43 H 1.07995 * 119.96153 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 0.0048 5 6 4.2739 -0.0002 -0.0009 6 7 5.6732 -0.0002 -0.0019 7 6 6.5012 -1.2064 0.1127 8 6 7.9088 -0.7870 -0.3658 9 6 7.8979 0.7332 -0.0834 10 1 8.3303 0.9426 0.8950 11 8 8.6204 1.4480 -1.1205 12 6 9.2289 2.5898 -0.7628 13 8 9.1598 2.9792 0.3789 14 6 9.9982 3.3858 -1.7852 15 6 10.5880 4.6324 -1.1225 16 6 11.3569 5.4288 -2.1451 17 1 11.4191 5.0804 -3.1655 18 6 11.9819 6.6016 -1.7778 19 7 11.9066 7.0256 -0.5350 20 14 12.9355 7.5884 -3.0451 21 1 12.0276 8.5669 -3.6959 22 1 14.0456 8.3126 -2.3755 23 1 13.4912 6.6703 -4.0714 24 6 6.4316 1.1040 -0.1136 25 8 6.0027 2.2335 -0.2202 26 6 3.5780 -1.2020 -0.0063 27 6 2.1969 -1.1985 -0.0054 28 1 -0.3633 -0.0049 1.0276 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6552 2.1326 0.0004 32 1 4.1164 2.1379 0.0090 33 1 6.5394 -1.5408 1.1494 34 1 6.1062 -1.9973 -0.5250 35 1 8.6836 -1.2863 0.2159 36 1 8.0343 -0.9857 -1.4302 37 1 10.8039 2.7739 -2.1909 38 1 9.3286 3.6856 -2.5913 39 1 9.7821 5.2441 -0.7172 40 1 11.2576 4.3330 -0.3162 41 1 12.3459 7.8508 -0.2768 42 1 4.1163 -2.1383 -0.0112 43 1 1.6551 -2.1327 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:20 Heat of formation + Delta-G solvation = -95.178340 kcal Electronic energy + Delta-G solvation = -25559.196109 eV Core-core repulsion = 21762.316052 eV Total energy + Delta-G solvation = -3796.880057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52612 -39.94113 -38.85637 -36.93705 -36.16032 -33.65813 -33.54420 -31.24696 -31.19830 -30.67284 -27.87700 -26.69139 -25.83044 -23.54293 -22.72560 -22.25688 -21.33460 -20.22026 -19.76775 -17.98668 -17.72719 -17.00281 -16.51639 -15.95347 -15.77750 -15.59574 -15.27788 -14.67526 -14.52909 -14.41113 -14.09898 -13.98379 -13.88132 -13.65308 -13.15204 -13.00908 -12.73532 -12.54421 -12.43499 -12.29220 -12.19998 -11.86431 -11.47052 -11.37954 -11.19793 -11.08197 -10.94005 -10.63349 -10.33589 -10.05135 -9.96957 -9.60092 -9.56317 -9.18422 -9.17042 -8.36352 -8.06703 -6.00058 -4.05032 0.98450 1.17328 2.10163 2.41359 2.77928 3.08035 3.33028 3.39045 3.41873 3.57475 3.86670 3.97826 4.40286 4.47117 4.52157 4.59060 4.64936 4.76993 4.90287 4.98611 5.00468 5.15553 5.28630 5.32883 5.35285 5.35884 5.37985 5.47408 5.64175 5.64594 5.77633 5.96754 6.10792 6.11096 6.17697 6.30804 6.41006 6.55212 6.73975 6.85774 6.86691 7.67424 7.74786 7.76476 7.99286 8.20573 8.37818 9.01869 9.58847 11.10983 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.002379 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.184715 B =11765.756925 C =12562.742905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.089 4.089 4 C -0.152 4.152 5 C 0.164 3.836 6 N -0.559 5.559 7 C 0.098 3.902 8 C -0.125 4.125 9 C 0.055 3.945 10 H 0.127 0.873 11 O -0.341 6.341 12 C 0.458 3.542 13 O -0.494 6.494 14 C -0.100 4.100 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.506 3.494 25 O -0.481 6.481 26 C -0.156 4.156 27 C -0.094 4.094 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.126 0.874 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 -23.115 1.398 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.108 4.108 4 C -0.172 4.172 5 C 0.071 3.929 6 N -0.285 5.285 7 C -0.024 4.024 8 C -0.163 4.163 9 C -0.004 4.004 10 H 0.144 0.856 11 O -0.259 6.259 12 C 0.301 3.699 13 O -0.379 6.379 14 C -0.138 4.138 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.294 3.706 25 O -0.353 6.353 26 C -0.176 4.176 27 C -0.112 4.112 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.388 -22.218 1.831 28.898 hybrid contribution 0.491 0.505 -0.422 0.822 sum -17.896 -21.713 1.409 28.173 Atomic orbital electron populations 1.20740 0.91161 1.02644 1.02144 1.19912 0.96194 0.93156 1.02451 1.20966 0.93363 0.97756 0.98709 1.21693 0.94676 0.98576 1.02278 1.17789 0.80686 0.94790 0.99683 1.45663 1.04040 1.09243 1.69545 1.22294 0.89662 0.87467 1.02948 1.22791 0.96514 0.91917 1.05092 1.23151 0.89162 0.92590 0.95515 0.85557 1.86747 1.61929 1.37286 1.39900 1.24946 0.76111 0.78199 0.90652 1.90640 1.58012 1.67427 1.21804 1.21795 0.98239 0.97590 0.96148 1.19035 0.96315 0.89116 0.95978 1.21141 1.32634 1.07050 0.95804 0.92277 1.25028 0.96488 0.97517 0.95353 1.69998 1.43681 1.22364 1.16695 0.86527 0.79571 0.80175 0.81314 1.20590 1.21199 1.19797 1.21224 0.89415 0.84233 0.75767 1.90680 1.77497 1.21190 1.45972 1.20718 0.94518 0.95998 1.06392 1.20773 0.93096 0.97626 0.99748 0.91392 0.91617 0.91729 0.85590 0.82728 0.89533 0.88867 0.87474 0.87864 0.88779 0.88782 0.95459 0.95533 0.92842 0.85653 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.12 -1.06 5.88 -104.59 -0.62 -1.68 16 3 C -0.09 -0.97 9.69 -39.61 -0.38 -1.36 16 4 C -0.15 -2.03 9.29 -39.39 -0.37 -2.39 16 5 C 0.16 1.96 6.60 -83.69 -0.55 1.41 16 6 N -0.56 -6.55 3.14 -112.27 -0.35 -6.91 16 7 C 0.10 0.68 6.51 -3.13 -0.02 0.66 16 8 C -0.13 -0.96 6.91 -25.10 -0.17 -1.14 16 9 C 0.06 0.75 3.30 -26.74 -0.09 0.66 16 10 H 0.13 1.75 7.14 -51.93 -0.37 1.38 16 11 O -0.34 -5.70 9.95 -42.26 -0.42 -6.12 16 12 C 0.46 9.32 7.96 36.00 0.29 9.61 16 13 O -0.49 -11.59 15.19 -18.75 -0.28 -11.87 16 14 C -0.10 -2.10 5.75 -27.88 -0.16 -2.26 16 15 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 16 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.51 7.80 7.60 -10.86 -0.08 7.72 16 25 O -0.48 -9.42 14.82 1.06 0.02 -9.40 16 26 C -0.16 -1.42 9.42 -39.39 -0.37 -1.79 16 27 C -0.09 -0.79 9.69 -39.61 -0.38 -1.18 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.16 2.45 5.26 -52.49 -0.28 2.17 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.43 7.24 -51.93 -0.38 0.05 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.13 0.80 6.75 -52.49 -0.35 0.44 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -36.30 364.40 -8.89 -45.19 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.98 Total: -1.44 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.08 Total: -5.01 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.38 Total: -33.52 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.69 Total: -27.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.30 -8.89 -45.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.989 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds