Wall clock time and date at job start Tue Mar 31 2020 11:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38277 * 119.93207 * 2 1 4 4 C 1.38109 * 120.07206 * 179.76915 * 3 2 1 5 5 C 1.38879 * 119.92785 * 0.50423 * 4 3 2 6 6 N 1.39925 * 120.07248 * 179.72535 * 5 4 3 7 7 C 1.46754 * 124.34878 * 174.29452 * 6 5 4 8 8 C 1.54478 * 105.47322 * 162.98809 * 7 6 5 9 9 C 1.54629 * 101.76692 * 25.41617 * 8 7 6 10 10 H 1.08998 * 110.48570 * 94.00859 * 9 8 7 11 11 O 1.45201 * 110.48955 * 216.52829 * 9 8 7 12 12 C 1.34231 * 116.99804 * 210.00147 * 11 9 8 13 13 O 1.20823 * 120.00073 * 359.97438 * 12 11 9 14 14 C 1.50695 * 119.99607 * 179.97438 * 12 11 9 15 15 C 1.53004 * 109.46960 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00192 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00229 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46935 * 89.99772 * 20 18 16 22 22 H 1.48493 * 109.47435 * 209.99581 * 20 18 16 23 23 H 1.48496 * 109.47243 * 330.00096 * 20 18 16 24 24 C 1.34420 * 124.34730 * 353.99887 * 6 5 4 25 25 O 1.21290 * 124.94402 * 0.39197 * 24 6 5 26 26 C 1.38875 * 119.85840 * 359.75215 * 5 4 3 27 27 C 1.38119 * 119.92659 * 359.97438 * 26 5 4 28 28 H 1.08998 * 109.47104 * 269.72463 * 1 2 3 29 29 H 1.09007 * 109.46644 * 29.72364 * 1 2 3 30 30 H 1.09000 * 109.47024 * 149.71805 * 1 2 3 31 31 H 1.08001 * 119.95993 * 0.02562 * 3 2 1 32 32 H 1.07992 * 120.03913 * 180.25838 * 4 3 2 33 33 H 1.08997 * 110.25121 * 281.99026 * 7 6 5 34 34 H 1.09005 * 110.25014 * 43.99040 * 7 6 5 35 35 H 1.08999 * 110.97539 * 143.53982 * 8 7 6 36 36 H 1.09002 * 110.96934 * 267.26163 * 8 7 6 37 37 H 1.09000 * 109.47211 * 299.99691 * 14 12 11 38 38 H 1.09002 * 109.47672 * 59.99418 * 14 12 11 39 39 H 1.08996 * 109.46852 * 299.99473 * 15 14 12 40 40 H 1.08995 * 109.47169 * 59.99689 * 15 14 12 41 41 H 0.96994 * 119.99642 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.03701 * 179.97438 * 26 5 4 43 43 H 1.07995 * 119.96153 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 0.0048 5 6 4.2739 -0.0002 -0.0009 6 7 5.6732 -0.0002 -0.0019 7 6 6.5012 -1.2064 0.1127 8 6 7.9088 -0.7870 -0.3658 9 6 7.8979 0.7332 -0.0834 10 1 8.3303 0.9426 0.8950 11 8 8.6204 1.4480 -1.1205 12 6 9.2289 2.5898 -0.7628 13 8 9.1598 2.9792 0.3789 14 6 9.9982 3.3858 -1.7852 15 6 10.5880 4.6324 -1.1225 16 6 11.3569 5.4288 -2.1451 17 1 11.4191 5.0804 -3.1655 18 6 11.9819 6.6016 -1.7778 19 7 11.9066 7.0256 -0.5350 20 14 12.9355 7.5884 -3.0451 21 1 12.0276 8.5669 -3.6959 22 1 14.0456 8.3126 -2.3755 23 1 13.4912 6.6703 -4.0714 24 6 6.4316 1.1040 -0.1136 25 8 6.0027 2.2335 -0.2202 26 6 3.5780 -1.2020 -0.0063 27 6 2.1969 -1.1985 -0.0054 28 1 -0.3633 -0.0049 1.0276 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6552 2.1326 0.0004 32 1 4.1164 2.1379 0.0090 33 1 6.5394 -1.5408 1.1494 34 1 6.1062 -1.9973 -0.5250 35 1 8.6836 -1.2863 0.2159 36 1 8.0343 -0.9857 -1.4302 37 1 10.8039 2.7739 -2.1909 38 1 9.3286 3.6856 -2.5913 39 1 9.7821 5.2441 -0.7172 40 1 11.2576 4.3330 -0.3162 41 1 12.3459 7.8508 -0.2768 42 1 4.1163 -2.1383 -0.0112 43 1 1.6551 -2.1327 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:19 Heat of formation + Delta-G solvation = -117.359653 kcal Electronic energy + Delta-G solvation = -25560.157963 eV Core-core repulsion = 21762.316052 eV Total energy + Delta-G solvation = -3797.841911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57482 -41.31798 -39.79739 -38.07998 -37.55303 -35.69375 -34.44534 -33.18166 -31.98805 -31.52348 -28.93591 -27.94584 -27.18556 -24.60604 -24.12031 -23.25088 -22.22028 -21.74785 -20.91707 -19.32269 -18.91830 -18.37433 -18.07137 -17.20249 -17.13990 -16.75213 -16.49310 -16.19360 -15.78245 -15.41155 -15.01913 -14.92338 -14.64978 -14.61847 -14.42561 -14.28310 -14.22127 -13.82266 -13.36859 -13.23124 -13.07518 -13.01225 -12.90039 -12.80696 -12.52156 -12.43378 -12.21228 -12.05369 -12.00916 -11.79474 -11.52006 -11.31186 -11.06466 -10.72348 -10.60289 -9.97094 -8.89107 -8.22064 -6.36527 0.11350 0.38336 0.97320 1.15961 1.41687 1.44735 1.51029 1.55927 1.84490 2.41623 2.78395 2.92262 3.11481 3.21438 3.53807 3.81331 3.88128 3.90803 3.97871 4.08208 4.21366 4.32397 4.38662 4.40276 4.42793 4.47097 4.60904 4.77830 4.80598 4.84525 4.87280 4.95289 5.03012 5.11588 5.19319 5.25085 5.37123 5.43065 5.49261 5.50201 5.66492 5.77263 5.87008 6.05756 6.09468 6.64961 6.72654 6.81782 7.33752 8.90858 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.002379 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.184715 B =11765.756925 C =12562.742905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.115 4.115 3 C -0.105 4.105 4 C -0.187 4.187 5 C 0.137 3.863 6 N -0.551 5.551 7 C 0.092 3.908 8 C -0.108 4.108 9 C 0.043 3.957 10 H 0.118 0.882 11 O -0.332 6.332 12 C 0.464 3.536 13 O -0.536 6.536 14 C -0.092 4.092 15 C 0.039 3.961 16 C -0.544 4.544 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.978 3.022 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.253 1.253 24 C 0.488 3.512 25 O -0.544 6.544 26 C -0.141 4.141 27 C -0.091 4.091 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.109 0.891 39 H -0.018 1.018 40 H -0.005 1.005 41 H 0.264 0.736 42 H 0.164 0.836 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 -27.330 -0.355 33.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.116 4.116 3 C -0.124 4.124 4 C -0.207 4.207 5 C 0.044 3.956 6 N -0.275 5.275 7 C -0.028 4.028 8 C -0.145 4.145 9 C -0.016 4.016 10 H 0.135 0.865 11 O -0.248 6.248 12 C 0.309 3.691 13 O -0.425 6.425 14 C -0.129 4.129 15 C 0.001 3.999 16 C -0.582 4.582 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.576 5.576 20 Si 0.801 3.199 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.176 1.176 24 C 0.277 3.723 25 O -0.421 6.421 26 C -0.161 4.161 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.000 1.000 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.181 0.819 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.039 -26.529 0.056 32.654 hybrid contribution 0.511 1.704 0.194 1.790 sum -18.528 -24.825 0.251 30.977 Atomic orbital electron populations 1.20803 0.89029 1.03680 1.03068 1.20295 0.97796 0.92691 1.00793 1.21087 0.92593 0.99174 0.99548 1.21577 0.95898 0.98199 1.05057 1.18031 0.80854 0.95404 1.01334 1.45773 1.04344 1.09666 1.67749 1.22792 0.88190 0.86208 1.05564 1.22970 0.98295 0.86639 1.06611 1.23664 0.87558 0.95993 0.94399 0.86460 1.86669 1.61492 1.35730 1.40903 1.24681 0.75810 0.78944 0.89629 1.90627 1.59664 1.68730 1.23456 1.21547 0.99570 0.95879 0.95943 1.18799 0.94422 0.91218 0.95413 1.21631 1.32370 1.07416 0.96773 0.90255 1.26162 0.97665 0.98982 0.97642 1.70174 1.45005 1.23084 1.19380 0.85258 0.77760 0.78429 0.78428 1.19938 1.20974 1.17644 1.21686 0.90686 0.84381 0.75588 1.90656 1.78596 1.23748 1.49128 1.21116 0.94944 0.95936 1.04125 1.21272 0.93085 0.98644 0.97902 0.90409 0.91608 0.89727 0.85451 0.86670 0.86837 0.85160 0.83943 0.86749 0.85512 0.87296 0.99970 0.98686 0.92720 0.81888 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.42 16 2 C -0.11 -1.91 5.88 -19.84 -0.12 -2.02 16 3 C -0.11 -2.41 9.69 22.25 0.22 -2.20 16 4 C -0.19 -5.42 9.29 22.39 0.21 -5.22 16 5 C 0.14 3.22 6.60 38.16 0.25 3.47 16 6 N -0.55 -12.55 3.14 -627.70 -1.97 -14.52 16 7 C 0.09 0.92 6.51 86.83 0.57 1.48 16 8 C -0.11 -1.30 6.91 31.65 0.22 -1.09 16 9 C 0.04 1.16 3.30 30.59 0.10 1.26 16 10 H 0.12 3.40 7.14 -2.39 -0.02 3.38 16 11 O -0.33 -11.21 9.95 -48.56 -0.48 -11.69 16 12 C 0.46 19.75 7.96 71.23 0.57 20.32 16 13 O -0.54 -27.03 15.19 21.97 0.33 -26.70 16 14 C -0.09 -3.95 5.75 29.85 0.17 -3.78 16 15 C 0.04 2.20 4.26 29.85 0.13 2.32 16 16 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 17 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 18 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 19 N -0.94 -59.87 13.29 21.45 0.28 -59.59 16 20 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 24 C 0.49 15.89 7.60 87.90 0.67 16.56 16 25 O -0.54 -23.68 14.82 1.24 0.02 -23.66 16 26 C -0.14 -2.09 9.42 22.39 0.21 -1.88 16 27 C -0.09 -1.20 9.69 22.25 0.22 -0.98 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.08 -2.38 -0.02 0.67 16 30 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.12 4.26 5.26 -2.91 -0.02 4.24 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.13 0.42 7.24 -2.38 -0.02 0.41 16 35 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 38 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 39 H -0.02 -1.18 8.10 -2.39 -0.02 -1.19 16 40 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 41 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.16 1.11 6.75 -2.91 -0.02 1.09 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -88.58 364.40 6.04 -82.54 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.02 Total: 10.04 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.81 Total: -3.20 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.68 Total: -74.11 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.13 Total: -62.05 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -88.58 6.04 -82.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.818 kcal (2) G-P(sol) polarization free energy of solvation -88.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds