Wall clock time and date at job start Tue Mar 31 2020 11:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00063 * 2 1 4 4 H 1.48497 * 109.47380 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47489 * 300.00058 * 3 2 1 6 6 H 1.48502 * 109.47051 * 59.99957 * 3 2 1 7 7 C 1.37885 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99745 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00123 * 179.97438 * 11 10 9 14 14 C 1.45199 * 117.00028 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.39967 * 29.82794 * 14 13 11 16 16 C 1.53063 * 109.40086 * 149.57259 * 14 13 11 17 17 C 1.53363 * 108.41398 * 169.03489 * 16 14 13 18 18 C 1.52919 * 108.66440 * 292.44656 * 17 16 14 19 19 N 1.45750 * 110.48986 * 50.75880 * 18 17 16 20 20 C 1.39926 * 117.94872 * 160.92435 * 19 18 17 21 21 C 1.38867 * 120.06728 * 89.07475 * 20 19 18 22 22 C 1.38116 * 119.92819 * 179.74527 * 21 20 19 23 23 C 1.38284 * 120.06732 * 0.53323 * 22 21 20 24 24 C 1.38279 * 120.13978 * 359.74410 * 23 22 21 25 25 C 1.38109 * 120.07482 * 359.97438 * 24 23 22 26 26 C 1.33359 * 124.10313 * 340.95324 * 19 18 17 27 27 O 1.21284 * 118.24141 * 182.19650 * 26 19 18 28 28 H 0.96992 * 119.99727 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47107 * 299.99777 * 9 7 2 30 30 H 1.08998 * 109.47753 * 59.99905 * 9 7 2 31 31 H 1.09000 * 109.46724 * 299.99671 * 10 9 7 32 32 H 1.09001 * 109.46911 * 59.99658 * 10 9 7 33 33 H 1.09000 * 109.67280 * 288.75861 * 16 14 13 34 34 H 1.09000 * 109.67456 * 49.29203 * 16 14 13 35 35 H 1.09005 * 109.59933 * 172.69695 * 17 16 14 36 36 H 1.09003 * 109.75041 * 52.28346 * 17 16 14 37 37 H 1.09005 * 109.30081 * 290.44732 * 18 17 16 38 38 H 1.09003 * 109.13488 * 170.96769 * 18 17 16 39 39 H 1.08005 * 120.03835 * 0.02890 * 21 20 19 40 40 H 1.07995 * 119.96666 * 180.27566 * 22 21 20 41 41 H 1.07998 * 119.92578 * 179.76375 * 23 22 21 42 42 H 1.08004 * 119.96098 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.03813 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4918 -4.9673 -0.0020 12 8 0.2836 -4.9672 -0.0020 13 8 2.1630 -6.1297 -0.0024 14 6 1.3722 -7.3474 -0.0035 15 1 0.4272 -7.1650 -0.5152 16 6 2.1396 -8.4514 -0.7350 17 6 1.4228 -9.7847 -0.4885 18 6 1.5656 -10.1512 0.9892 19 7 1.1719 -9.0301 1.8333 20 6 0.8487 -9.2962 3.1684 21 6 1.8398 -9.2788 4.1410 22 6 1.5167 -9.5367 5.4588 23 6 0.2097 -9.8229 5.8085 24 6 -0.7784 -9.8467 4.8414 25 6 -0.4628 -9.5840 3.5228 26 6 1.0999 -7.7666 1.4127 27 8 0.7988 -6.9103 2.2170 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5575 0.8880 30 1 0.6247 -2.5564 -0.8919 31 1 2.8726 -3.6040 -0.8910 32 1 2.8713 -3.6047 0.8890 33 1 2.1600 -8.2379 -1.8036 34 1 3.1585 -8.5059 -0.3516 35 1 1.8756 -10.5624 -1.1036 36 1 0.3669 -9.6873 -0.7408 37 1 2.6034 -10.4117 1.1972 38 1 0.9284 -11.0081 1.2080 39 1 2.8614 -9.0592 3.8679 40 1 2.2862 -9.5189 6.2163 41 1 -0.0397 -10.0280 6.8390 42 1 -1.7981 -10.0710 5.1177 43 1 -1.2351 -9.6023 2.7681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:23 Heat of formation + Delta-G solvation = -116.695834 kcal Electronic energy + Delta-G solvation = -26174.596628 eV Core-core repulsion = 22376.783502 eV Total energy + Delta-G solvation = -3797.813126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.50391 -41.28629 -39.57736 -37.89895 -37.55738 -35.68646 -34.71854 -33.17361 -31.95579 -30.70612 -30.32966 -28.08147 -25.78107 -24.80586 -23.80527 -23.64572 -22.75556 -21.59748 -20.18338 -19.27389 -18.74525 -18.42041 -18.18993 -17.38601 -17.14563 -16.80461 -16.62993 -16.47014 -15.93394 -15.25725 -15.23617 -14.95981 -14.69615 -14.51018 -14.42492 -14.38005 -14.26738 -13.65018 -13.33172 -13.14222 -12.87263 -12.82804 -12.68040 -12.50715 -12.46446 -12.35232 -12.21262 -12.05857 -11.93796 -11.77334 -11.46806 -11.27223 -10.83603 -10.61177 -10.08737 -9.96439 -9.82590 -8.21878 -6.36514 0.19765 0.36729 0.97612 1.19611 1.41616 1.43634 1.57172 1.64977 1.87867 2.41824 2.70693 3.11534 3.26982 3.50800 3.59776 3.75049 3.88051 3.92103 3.97523 4.10469 4.17848 4.30533 4.38493 4.39992 4.42890 4.46535 4.55121 4.67855 4.71850 4.84098 4.92840 4.95992 5.00077 5.14226 5.30472 5.32137 5.43028 5.44695 5.49392 5.50161 5.50619 5.77411 5.97879 6.09491 6.10591 6.70620 6.81937 6.89536 7.33719 8.91405 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.002889 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.426865 B = 9688.510600 C =10707.889303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.979 3.021 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.040 3.960 10 C -0.091 4.091 11 C 0.465 3.535 12 O -0.535 6.535 13 O -0.336 6.336 14 C 0.070 3.930 15 H 0.102 0.898 16 C -0.110 4.110 17 C -0.124 4.124 18 C 0.102 3.898 19 N -0.553 5.553 20 C 0.109 3.891 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.128 4.128 26 C 0.497 3.503 27 O -0.575 6.575 28 H 0.264 0.736 29 H -0.019 1.019 30 H -0.007 1.007 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -30.130 3.652 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.802 3.198 4 H -0.175 1.175 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.003 3.997 10 C -0.128 4.128 11 C 0.309 3.691 12 O -0.423 6.423 13 O -0.252 6.252 14 C 0.012 3.988 15 H 0.119 0.881 16 C -0.148 4.148 17 C -0.161 4.161 18 C -0.018 4.018 19 N -0.284 5.284 20 C 0.020 3.980 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.148 4.148 26 C 0.286 3.714 27 O -0.454 6.454 28 H 0.073 0.927 29 H -0.001 1.001 30 H 0.012 0.988 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.159 0.841 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.166 0.834 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.840 -29.617 3.995 30.450 hybrid contribution -0.560 1.235 0.121 1.362 sum 5.280 -28.382 4.117 29.161 Atomic orbital electron populations 1.70185 1.08359 1.27942 1.51177 1.26173 0.95787 1.04086 0.94389 0.85196 0.79265 0.77678 0.77638 1.17532 1.20248 1.20704 1.21654 0.94129 0.91114 1.51248 0.90293 1.18784 0.93617 0.92078 0.95218 1.21526 0.99358 0.85802 1.06148 1.24618 0.87421 0.86583 0.70446 1.90613 1.17504 1.87812 1.46343 1.86636 1.40488 1.14110 1.84002 1.22833 0.98767 0.84803 0.92420 0.88056 1.21903 1.00207 0.90721 1.01927 1.21973 1.02416 0.96889 0.94810 1.21981 1.02599 0.87152 0.90052 1.45052 1.66663 1.07057 1.09664 1.17838 0.93830 1.01999 0.84361 1.21467 0.99271 0.99990 0.93625 1.21412 0.97917 0.98650 0.95413 1.21616 0.92615 0.98389 1.00837 1.21389 1.01019 0.99245 0.91851 1.21457 0.95057 1.00226 0.98027 1.20892 0.76893 0.82585 0.91067 1.90794 1.48129 1.50642 1.55798 0.92707 1.00081 0.98814 0.85695 0.87471 0.87400 0.88595 0.84109 0.90572 0.88962 0.88194 0.85788 0.83174 0.82801 0.83364 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.49 13.29 21.45 0.28 -60.21 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 0.98 45.19 29.54 68.60 2.03 47.22 16 4 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.08 4.21 7.74 -2.91 -0.02 4.19 16 9 C 0.04 2.34 4.26 29.85 0.13 2.47 16 10 C -0.09 -4.07 5.75 29.85 0.17 -3.90 16 11 C 0.46 20.83 7.42 71.24 0.53 21.36 16 12 O -0.53 -28.21 15.03 22.04 0.33 -27.88 16 13 O -0.34 -12.15 9.76 -45.90 -0.45 -12.60 16 14 C 0.07 2.07 2.69 29.70 0.08 2.15 16 15 H 0.10 3.26 7.15 -2.39 -0.02 3.25 16 16 C -0.11 -1.71 5.69 30.74 0.17 -1.54 16 17 C -0.12 -1.11 6.02 30.69 0.18 -0.93 16 18 C 0.10 1.23 6.34 86.49 0.55 1.78 16 19 N -0.55 -13.22 2.85 -635.81 -1.81 -15.03 16 20 C 0.11 2.73 4.01 38.15 0.15 2.88 16 21 C -0.12 -2.83 9.97 22.39 0.22 -2.61 16 22 C -0.12 -2.12 10.04 22.25 0.22 -1.89 16 23 C -0.12 -1.95 10.04 22.29 0.22 -1.72 16 24 C -0.12 -2.18 10.04 22.25 0.22 -1.96 16 25 C -0.13 -2.99 9.97 22.39 0.22 -2.77 16 26 C 0.50 16.58 7.20 87.71 0.63 17.21 16 27 O -0.58 -26.25 15.83 12.65 0.20 -26.05 16 28 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 29 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 30 H -0.01 -0.42 8.10 -2.39 -0.02 -0.44 16 31 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 32 H 0.11 4.47 8.14 -2.39 -0.02 4.45 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.14 0.20 8.14 -2.38 -0.02 0.18 16 36 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 39 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -89.41 366.36 6.00 -83.41 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.00 Total: 12.14 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.41 Total: -1.01 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.52 Total: -75.23 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: 0.08 Total: -66.53 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -89.41 6.00 -83.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.281 kcal (2) G-P(sol) polarization free energy of solvation -89.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds