Wall clock time and date at job start Tue Mar 31 2020 11:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48501 * 109.46795 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46999 * 120.00031 * 3 2 1 6 6 H 1.48497 * 109.47378 * 240.00034 * 3 2 1 7 7 C 1.37874 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46786 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00347 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99620 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99559 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.40057 * 330.16806 * 14 13 11 16 16 C 1.53074 * 109.39441 * 210.43086 * 14 13 11 17 17 C 1.53343 * 108.42106 * 190.96955 * 16 14 13 18 18 C 1.52916 * 108.68752 * 67.51526 * 17 16 14 19 19 N 1.45754 * 110.49057 * 309.26394 * 18 17 16 20 20 C 1.39922 * 117.94701 * 199.09462 * 19 18 17 21 21 C 1.38874 * 120.07251 * 270.65064 * 20 19 18 22 22 C 1.38115 * 119.92863 * 179.79281 * 21 20 19 23 23 C 1.38283 * 120.07108 * 0.48168 * 22 21 20 24 24 C 1.38286 * 120.13914 * 359.74598 * 23 22 21 25 25 C 1.38113 * 120.07095 * 0.02562 * 24 23 22 26 26 C 1.33355 * 124.10516 * 19.06887 * 19 18 17 27 27 O 1.21292 * 118.24174 * 177.78136 * 26 19 18 28 28 H 0.97007 * 119.99806 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46825 * 299.99817 * 9 7 2 30 30 H 1.08996 * 109.46580 * 60.00017 * 9 7 2 31 31 H 1.08996 * 109.46800 * 300.00297 * 10 9 7 32 32 H 1.09000 * 109.46894 * 59.99970 * 10 9 7 33 33 H 1.08996 * 109.67262 * 310.70001 * 16 14 13 34 34 H 1.08997 * 109.67672 * 71.24378 * 16 14 13 35 35 H 1.09002 * 109.58445 * 307.76160 * 17 16 14 36 36 H 1.08992 * 109.60534 * 187.28621 * 17 16 14 37 37 H 1.08996 * 109.30256 * 188.94159 * 18 17 16 38 38 H 1.09010 * 109.29960 * 69.57346 * 18 17 16 39 39 H 1.08000 * 120.03332 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.96494 * 180.23000 * 22 21 20 41 41 H 1.07999 * 119.92695 * 179.77005 * 23 22 21 42 42 H 1.07999 * 119.96014 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.02864 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4915 -4.9672 -0.0012 12 8 0.2833 -4.9672 -0.0003 13 8 2.1627 -6.1297 -0.0026 14 6 1.3718 -7.3474 -0.0025 15 1 0.4272 -7.1655 0.5101 16 6 2.1398 -8.4523 0.7273 17 6 1.4232 -9.7852 0.4799 18 6 1.5639 -10.1501 -0.9984 19 7 1.1694 -9.0280 -1.8408 20 6 0.8440 -9.2927 -3.1756 21 6 1.8326 -9.2691 -4.1507 22 6 1.5088 -9.5350 -5.4668 23 6 0.2003 -9.8148 -5.8155 24 6 -0.7872 -9.8344 -4.8477 25 6 -0.4692 -9.5739 -3.5291 26 6 1.0985 -7.7649 -1.4188 27 8 0.7969 -6.9075 -2.2220 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6239 -2.5566 -0.8903 31 1 2.8711 -3.6039 -0.8922 32 1 2.8725 -3.6048 0.8877 33 1 3.1583 -8.5064 0.3431 34 1 2.1609 -8.2400 1.7962 35 1 0.3677 -9.6850 0.7329 36 1 1.8765 -10.5635 1.0935 37 1 0.9288 -11.0077 -1.2199 38 1 2.6015 -10.4105 -1.2080 39 1 2.8540 -9.0467 -3.8796 40 1 2.2778 -9.5205 -6.2250 41 1 -0.0509 -10.0187 -6.8459 42 1 -1.8082 -10.0536 -5.1232 43 1 -1.2409 -9.5898 -2.7737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:26 Heat of formation + Delta-G solvation = -93.762249 kcal Electronic energy + Delta-G solvation = -26174.624642 eV Core-core repulsion = 22377.805991 eV Total energy + Delta-G solvation = -3796.818651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36386 -39.86328 -38.56214 -36.74639 -36.15035 -33.79272 -33.51252 -31.16344 -31.12107 -29.78884 -29.37661 -26.10016 -24.78040 -23.61723 -22.84518 -22.10048 -21.91656 -19.83640 -19.27559 -17.84882 -17.43444 -17.13688 -16.56168 -16.34717 -15.88634 -15.42674 -15.28757 -14.93670 -14.45840 -14.35488 -14.10390 -13.95326 -13.79815 -13.64153 -13.12589 -12.89750 -12.67287 -12.26700 -12.03074 -11.89654 -11.87610 -11.60490 -11.46561 -11.24195 -11.10458 -11.04727 -10.88507 -10.62173 -9.98908 -9.86619 -9.60667 -9.50133 -9.17011 -9.13718 -9.12261 -9.01018 -8.32384 -5.96150 -4.01027 1.02405 1.17578 2.26480 2.56974 2.96850 3.19960 3.36422 3.40687 3.43137 3.50295 4.29362 4.33717 4.37217 4.45613 4.50970 4.71017 4.73841 4.86791 4.89355 5.00082 5.06679 5.18850 5.26395 5.36349 5.36454 5.38935 5.43285 5.57088 5.59192 5.77226 5.83434 6.07515 6.17928 6.24739 6.27043 6.28164 6.33072 6.65736 6.81015 6.96611 7.09792 7.71835 7.80903 8.01338 8.04071 8.30525 8.46185 9.05801 9.62454 11.14903 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002891 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.540215 B = 9684.227329 C =10704.732185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.099 4.099 11 C 0.459 3.541 12 O -0.492 6.492 13 O -0.344 6.344 14 C 0.079 3.921 15 H 0.115 0.885 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.114 3.886 19 N -0.567 5.567 20 C 0.136 3.864 21 C -0.106 4.106 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.108 4.108 26 C 0.504 3.496 27 O -0.506 6.506 28 H 0.262 0.738 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -28.283 -3.769 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.137 4.137 11 C 0.302 3.698 12 O -0.377 6.377 13 O -0.262 6.262 14 C 0.020 3.980 15 H 0.133 0.867 16 C -0.157 4.157 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.301 5.301 20 C 0.046 3.954 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.132 4.132 25 C -0.128 4.128 26 C 0.291 3.709 27 O -0.378 6.378 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.355 -27.665 -4.132 28.172 hybrid contribution 0.261 0.845 -0.030 0.885 sum 3.616 -26.820 -4.162 27.381 Atomic orbital electron populations 1.69991 1.06091 1.26810 1.49879 1.25021 0.94857 0.99297 0.95163 0.86598 0.79499 0.82913 0.78612 1.21268 1.20182 1.20160 1.21118 0.93015 0.90652 1.51856 0.92369 1.19018 0.93224 0.89158 0.98955 1.21761 1.00669 0.87345 1.03917 1.24829 0.88188 0.85431 0.71372 1.90627 1.15742 1.86993 1.44289 1.86712 1.40702 1.13966 1.84829 1.22315 0.98339 0.84962 0.92385 0.86714 1.21767 1.00360 0.91800 1.01750 1.21886 1.02392 0.97588 0.95137 1.21526 1.00975 0.88279 0.90001 1.44970 1.68770 1.07314 1.09067 1.17550 0.93004 1.00858 0.83940 1.21314 0.99335 0.99082 0.92827 1.21055 0.96798 0.99668 0.95646 1.21221 0.93069 0.99642 0.99507 1.21048 0.99586 1.00086 0.92437 1.21309 0.95302 0.99175 0.96971 1.20585 0.77514 0.81769 0.91040 1.90836 1.44537 1.48322 1.54146 0.92820 0.95593 0.95467 0.88941 0.88968 0.89601 0.89250 0.90368 0.88409 0.90215 0.91112 0.85866 0.85570 0.85754 0.85584 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.93 4.26 -27.88 -0.12 0.81 16 10 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 11 C 0.46 9.89 7.42 36.01 0.27 10.16 16 12 O -0.49 -12.15 15.03 -18.84 -0.28 -12.44 16 13 O -0.34 -6.15 9.76 -45.01 -0.44 -6.59 16 14 C 0.08 1.15 2.69 -28.10 -0.08 1.07 16 15 H 0.12 1.75 7.15 -51.93 -0.37 1.38 16 16 C -0.12 -1.06 5.69 -26.52 -0.15 -1.21 16 17 C -0.13 -0.80 6.02 -26.60 -0.16 -0.96 16 18 C 0.11 0.82 6.35 -4.49 -0.03 0.80 16 19 N -0.57 -6.82 2.85 -114.65 -0.33 -7.15 16 20 C 0.14 1.69 4.01 -83.69 -0.34 1.35 16 21 C -0.11 -1.22 9.97 -39.39 -0.39 -1.62 16 22 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 23 C -0.12 -1.07 10.04 -39.55 -0.40 -1.47 16 24 C -0.11 -1.11 10.04 -39.61 -0.40 -1.51 16 25 C -0.11 -1.25 9.97 -39.39 -0.39 -1.64 16 26 C 0.50 8.11 7.20 -11.87 -0.09 8.02 16 27 O -0.51 -10.83 15.83 -10.86 -0.17 -11.01 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 32 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 33 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -37.94 366.36 -9.47 -47.40 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.25 Total: -1.65 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -3.24 Total: -4.00 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.41 Total: -34.21 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.89 Total: -30.04 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.94 -9.47 -47.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.360 kcal (2) G-P(sol) polarization free energy of solvation -37.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds