Wall clock time and date at job start Tue Mar 31 2020 11:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48501 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47557 * 300.00669 * 3 2 1 6 6 H 1.48507 * 109.46774 * 60.00394 * 3 2 1 7 7 C 1.37879 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47429 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99666 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00476 * 179.97438 * 11 10 9 14 14 C 1.45196 * 117.00424 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47455 * 180.02562 * 14 13 11 16 16 C 1.38296 * 119.96547 * 269.98347 * 15 14 13 17 17 C 1.38261 * 120.14687 * 180.02562 * 16 15 14 18 18 C 1.38138 * 120.06346 * 359.71873 * 17 16 15 19 19 C 1.38850 * 119.92911 * 0.55446 * 18 17 16 20 20 N 1.39929 * 120.06947 * 179.72248 * 19 18 17 21 21 C 1.46766 * 124.35047 * 174.00656 * 20 19 18 22 22 C 1.54474 * 105.47319 * 162.98393 * 21 20 19 23 23 C 1.54623 * 101.76574 * 25.41620 * 22 21 20 24 24 C 1.34415 * 124.34858 * 354.00420 * 20 19 18 25 25 O 1.21290 * 124.94582 * 0.67814 * 24 20 19 26 26 C 1.38088 * 119.96587 * 89.99789 * 15 14 13 27 27 H 0.97003 * 120.00305 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46625 * 60.00642 * 9 7 2 29 29 H 1.08996 * 109.47317 * 300.00617 * 9 7 2 30 30 H 1.08998 * 109.46799 * 60.00400 * 10 9 7 31 31 H 1.09001 * 109.47238 * 300.00840 * 10 9 7 32 32 H 1.09004 * 109.46931 * 59.99912 * 14 13 11 33 33 H 1.09007 * 109.47091 * 300.00633 * 14 13 11 34 34 H 1.08003 * 119.93285 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.97111 * 180.02562 * 17 16 15 36 36 H 1.08005 * 120.03260 * 180.27470 * 18 17 16 37 37 H 1.09006 * 110.24238 * 43.97955 * 21 20 19 38 38 H 1.08999 * 110.24052 * 281.98638 * 21 20 19 39 39 H 1.09004 * 110.97045 * 267.29833 * 22 21 20 40 40 H 1.08998 * 111.00023 * 143.55353 * 22 21 20 41 41 H 1.09004 * 110.48656 * 216.52391 * 23 22 21 42 42 H 1.09001 * 110.48997 * 93.88332 * 23 22 21 43 43 H 1.08006 * 120.03299 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2836 -4.9672 -0.0020 13 8 2.1630 -6.1296 -0.0018 14 6 1.3723 -7.3474 -0.0018 15 6 2.2902 -8.5425 -0.0019 16 6 2.7107 -9.0905 -1.2001 17 6 3.5525 -10.1873 -1.2045 18 6 3.9809 -10.7357 -0.0113 19 6 3.5560 -10.1914 1.1934 20 7 3.9835 -10.7482 2.4038 21 6 3.6974 -10.1767 3.7251 22 6 3.9668 -11.3153 4.7336 23 6 4.9831 -12.1874 3.9606 24 6 4.7090 -11.8751 2.5060 25 8 5.0928 -12.5417 1.5681 26 6 2.7105 -9.0895 1.1943 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 0.7430 -7.3720 -0.8916 33 1 0.7437 -7.3725 0.8884 34 1 2.3801 -8.6613 -2.1344 35 1 3.8794 -10.6127 -2.1419 36 1 4.6420 -11.5897 -0.0154 37 1 2.6555 -9.8611 3.7818 38 1 4.3591 -9.3334 3.9225 39 1 3.0546 -11.8737 4.9445 40 1 4.4054 -10.9272 5.6529 41 1 4.8103 -13.2444 4.1629 42 1 6.0033 -11.9092 4.2250 43 1 2.3813 -8.6615 2.1297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813092933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:14 Heat of formation + Delta-G solvation = -99.944437 kcal Electronic energy + Delta-G solvation = -25012.259167 eV Core-core repulsion = 21215.172437 eV Total energy + Delta-G solvation = -3797.086731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45210 -40.04972 -38.93207 -37.03238 -36.16163 -33.69296 -33.58839 -32.05032 -31.09157 -29.56323 -28.24289 -26.98938 -25.57937 -23.66645 -22.77477 -22.05898 -21.47360 -19.82914 -19.76437 -17.85274 -17.35390 -17.25452 -16.64148 -16.36212 -16.24913 -15.74451 -15.42316 -14.85792 -14.59256 -14.46794 -14.27446 -14.12412 -13.90472 -13.42161 -13.30401 -13.21422 -12.97004 -12.34128 -12.24530 -12.19767 -12.10759 -11.78976 -11.64259 -11.41843 -11.18491 -10.98848 -10.63656 -10.54898 -10.41088 -10.06276 -10.01772 -9.95124 -9.60988 -9.19054 -9.05617 -8.39322 -8.21468 -6.02893 -4.07669 0.97110 1.05414 2.16363 2.36502 2.81014 3.11096 3.29821 3.37321 3.41031 3.69369 3.77257 3.86456 4.23750 4.41245 4.42914 4.53399 4.61985 4.81206 4.92981 4.99633 5.08743 5.10957 5.15327 5.20986 5.27063 5.32645 5.35372 5.38446 5.41526 5.62505 5.72260 5.92087 6.11212 6.14428 6.19143 6.28116 6.39456 6.62745 6.68614 6.79363 6.92251 7.60789 7.65499 7.72045 7.96742 8.24187 8.39952 8.99715 9.56493 11.08144 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.002155 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.669449 B =12987.588732 C =13624.112982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.506 6.506 13 O -0.360 6.360 14 C 0.105 3.895 15 C -0.062 4.062 16 C -0.118 4.118 17 C -0.094 4.094 18 C -0.149 4.149 19 C 0.158 3.842 20 N -0.558 5.558 21 C 0.091 3.909 22 C -0.131 4.131 23 C -0.153 4.153 24 C 0.515 3.485 25 O -0.513 6.513 26 C -0.133 4.133 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -25.958 7.904 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.300 3.700 12 O -0.392 6.392 13 O -0.279 6.279 14 C 0.031 3.969 15 C -0.063 4.063 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.169 4.169 19 C 0.065 3.935 20 N -0.282 5.282 21 C -0.031 4.031 22 C -0.169 4.169 23 C -0.193 4.193 24 C 0.304 3.696 25 O -0.388 6.388 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.438 -26.237 7.429 28.544 hybrid contribution 0.180 0.977 0.051 0.995 sum 8.618 -25.259 7.479 27.717 Atomic orbital electron populations 1.70002 1.06091 1.26655 1.50043 1.25028 0.94862 0.99359 0.95138 0.86488 0.80029 0.83550 0.77622 1.19648 1.20962 1.20964 1.21194 0.93115 0.90623 1.51639 0.92249 1.19026 0.93234 0.89295 0.98900 1.21771 1.00667 0.87572 1.04032 1.24812 0.87963 0.85640 0.71597 1.90638 1.15880 1.87648 1.45059 1.86644 1.41901 1.14498 1.84810 1.21675 0.91625 0.80267 1.03334 1.19326 0.98553 0.95494 0.92942 1.21112 0.98334 0.96600 0.97667 1.21050 0.96811 0.95608 0.97789 1.21653 1.02210 1.02586 0.90468 1.17689 0.96654 0.94709 0.84498 1.45796 1.51470 1.25042 1.05871 1.22330 1.03193 0.97257 0.80300 1.22627 1.00035 0.96015 0.98207 1.22350 1.02086 1.03094 0.91766 1.21117 0.76895 0.79460 0.92086 1.90635 1.51976 1.52415 1.43817 1.20648 0.99466 0.96617 0.98581 0.92898 0.95562 0.95596 0.88973 0.88923 0.90302 0.90596 0.85470 0.85247 0.82807 0.89266 0.89686 0.89530 0.88400 0.87464 0.87199 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 10 C -0.10 -2.10 5.75 -27.88 -0.16 -2.26 16 11 C 0.46 8.94 7.96 36.01 0.29 9.22 16 12 O -0.51 -11.39 15.73 -18.75 -0.29 -11.69 16 13 O -0.36 -5.99 10.20 -39.25 -0.40 -6.39 16 14 C 0.10 1.44 5.59 36.01 0.20 1.64 16 15 C -0.06 -0.76 5.52 -104.66 -0.58 -1.34 16 16 C -0.12 -1.33 9.70 -39.55 -0.38 -1.72 16 17 C -0.09 -1.00 10.04 -39.61 -0.40 -1.40 16 18 C -0.15 -1.76 9.29 -39.39 -0.37 -2.12 16 19 C 0.16 1.78 6.60 -83.69 -0.55 1.23 16 20 N -0.56 -5.12 3.14 -112.27 -0.35 -5.47 16 21 C 0.09 0.50 6.51 -3.12 -0.02 0.48 16 22 C -0.13 -0.40 7.18 -25.10 -0.18 -0.58 16 23 C -0.15 -0.73 6.86 -26.74 -0.18 -0.91 16 24 C 0.51 4.90 7.92 -10.86 -0.09 4.81 16 25 O -0.51 -6.65 14.82 5.55 0.08 -6.56 16 26 C -0.13 -1.48 9.07 -39.40 -0.36 -1.84 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.94 5.26 -52.48 -0.28 1.66 16 37 H 0.09 0.42 7.24 -51.93 -0.38 0.05 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.13 1.21 6.75 -52.48 -0.35 0.86 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -35.17 365.58 -9.08 -44.25 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.03 Total: -2.32 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -3.31 Total: -7.50 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.38 Total: -31.65 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.61 Total: -24.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.17 -9.08 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813092933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.690 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds