Wall clock time and date at job start Tue Mar 31 2020 11:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48501 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47557 * 300.00669 * 3 2 1 6 6 H 1.48507 * 109.46774 * 60.00394 * 3 2 1 7 7 C 1.37879 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47429 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99666 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00476 * 179.97438 * 11 10 9 14 14 C 1.45196 * 117.00424 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47455 * 180.02562 * 14 13 11 16 16 C 1.38296 * 119.96547 * 269.98347 * 15 14 13 17 17 C 1.38261 * 120.14687 * 180.02562 * 16 15 14 18 18 C 1.38138 * 120.06346 * 359.71873 * 17 16 15 19 19 C 1.38850 * 119.92911 * 0.55446 * 18 17 16 20 20 N 1.39929 * 120.06947 * 179.72248 * 19 18 17 21 21 C 1.46766 * 124.35047 * 174.00656 * 20 19 18 22 22 C 1.54474 * 105.47319 * 162.98393 * 21 20 19 23 23 C 1.54623 * 101.76574 * 25.41620 * 22 21 20 24 24 C 1.34415 * 124.34858 * 354.00420 * 20 19 18 25 25 O 1.21290 * 124.94582 * 0.67814 * 24 20 19 26 26 C 1.38088 * 119.96587 * 89.99789 * 15 14 13 27 27 H 0.97003 * 120.00305 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46625 * 60.00642 * 9 7 2 29 29 H 1.08996 * 109.47317 * 300.00617 * 9 7 2 30 30 H 1.08998 * 109.46799 * 60.00400 * 10 9 7 31 31 H 1.09001 * 109.47238 * 300.00840 * 10 9 7 32 32 H 1.09004 * 109.46931 * 59.99912 * 14 13 11 33 33 H 1.09007 * 109.47091 * 300.00633 * 14 13 11 34 34 H 1.08003 * 119.93285 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.97111 * 180.02562 * 17 16 15 36 36 H 1.08005 * 120.03260 * 180.27470 * 18 17 16 37 37 H 1.09006 * 110.24238 * 43.97955 * 21 20 19 38 38 H 1.08999 * 110.24052 * 281.98638 * 21 20 19 39 39 H 1.09004 * 110.97045 * 267.29833 * 22 21 20 40 40 H 1.08998 * 111.00023 * 143.55353 * 22 21 20 41 41 H 1.09004 * 110.48656 * 216.52391 * 23 22 21 42 42 H 1.09001 * 110.48997 * 93.88332 * 23 22 21 43 43 H 1.08006 * 120.03299 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2836 -4.9672 -0.0020 13 8 2.1630 -6.1296 -0.0018 14 6 1.3723 -7.3474 -0.0018 15 6 2.2902 -8.5425 -0.0019 16 6 2.7107 -9.0905 -1.2001 17 6 3.5525 -10.1873 -1.2045 18 6 3.9809 -10.7357 -0.0113 19 6 3.5560 -10.1914 1.1934 20 7 3.9835 -10.7482 2.4038 21 6 3.6974 -10.1767 3.7251 22 6 3.9668 -11.3153 4.7336 23 6 4.9831 -12.1874 3.9606 24 6 4.7090 -11.8751 2.5060 25 8 5.0928 -12.5417 1.5681 26 6 2.7105 -9.0895 1.1943 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 0.7430 -7.3720 -0.8916 33 1 0.7437 -7.3725 0.8884 34 1 2.3801 -8.6613 -2.1344 35 1 3.8794 -10.6127 -2.1419 36 1 4.6420 -11.5897 -0.0154 37 1 2.6555 -9.8611 3.7818 38 1 4.3591 -9.3334 3.9225 39 1 3.0546 -11.8737 4.9445 40 1 4.4054 -10.9272 5.6529 41 1 4.8103 -13.2444 4.1629 42 1 6.0033 -11.9092 4.2250 43 1 2.3813 -8.6615 2.1297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813092933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:13 Heat of formation + Delta-G solvation = -119.732872 kcal Electronic energy + Delta-G solvation = -25013.117258 eV Core-core repulsion = 21215.172437 eV Total energy + Delta-G solvation = -3797.944822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14241 -41.49858 -39.85264 -37.79317 -37.54912 -35.64086 -34.37101 -33.25761 -32.77106 -30.31150 -28.79933 -28.40571 -27.14448 -24.34027 -24.20705 -23.24053 -22.11561 -21.47259 -20.54664 -19.08770 -18.65349 -18.10303 -17.85243 -17.64611 -17.39998 -16.93719 -16.52777 -16.46396 -15.79576 -15.46282 -14.98637 -14.82096 -14.70063 -14.58461 -14.52147 -14.21791 -13.91712 -13.75608 -13.67226 -13.40434 -13.12930 -12.85616 -12.71901 -12.48760 -12.39170 -12.25017 -12.02627 -12.00696 -11.74505 -11.71035 -11.45806 -11.27903 -11.16244 -10.76203 -10.58057 -10.00485 -9.01785 -8.19616 -6.33054 0.04978 0.19334 1.24075 1.42721 1.44578 1.44871 1.58338 1.72560 1.84939 2.43542 2.78913 3.14335 3.22373 3.48057 3.56777 3.76181 3.93473 3.95957 3.99451 4.07615 4.21414 4.30267 4.32741 4.41911 4.46292 4.50177 4.51885 4.59131 4.67819 4.77916 4.88097 4.92830 5.05684 5.10061 5.15128 5.33510 5.35582 5.44548 5.48573 5.50535 5.56517 5.81600 5.95066 6.00211 6.14104 6.79288 6.87198 6.90347 7.37152 8.93168 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.002155 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.669449 B =12987.588732 C =13624.112982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.038 3.962 10 C -0.095 4.095 11 C 0.467 3.533 12 O -0.542 6.542 13 O -0.352 6.352 14 C 0.103 3.897 15 C -0.074 4.074 16 C -0.125 4.125 17 C -0.092 4.092 18 C -0.164 4.164 19 C 0.149 3.851 20 N -0.563 5.563 21 C 0.080 3.920 22 C -0.117 4.117 23 C -0.144 4.144 24 C 0.500 3.500 25 O -0.557 6.557 26 C -0.133 4.133 27 H 0.264 0.736 28 H -0.010 1.010 29 H -0.008 1.008 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -26.082 9.223 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.001 3.999 10 C -0.132 4.132 11 C 0.312 3.688 12 O -0.432 6.432 13 O -0.269 6.269 14 C 0.030 3.970 15 C -0.075 4.075 16 C -0.143 4.143 17 C -0.111 4.111 18 C -0.184 4.184 19 C 0.055 3.945 20 N -0.285 5.285 21 C -0.040 4.040 22 C -0.155 4.155 23 C -0.184 4.184 24 C 0.292 3.708 25 O -0.436 6.436 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.355 -26.379 8.779 29.667 hybrid contribution -0.411 0.894 -0.359 1.047 sum 9.944 -25.485 8.419 28.623 Atomic orbital electron populations 1.70160 1.08183 1.27858 1.51334 1.26091 0.95738 1.03828 0.94580 0.85275 0.79285 0.78134 0.77564 1.17748 1.20695 1.20554 1.21671 0.94091 0.91301 1.50949 0.90509 1.18804 0.93677 0.91885 0.95546 1.21522 0.99359 0.86075 1.06218 1.24487 0.87157 0.86371 0.70756 1.90633 1.17386 1.88258 1.46925 1.86601 1.41762 1.14551 1.84023 1.21886 0.91921 0.79312 1.03868 1.19293 0.99133 0.95211 0.93826 1.21291 0.98336 0.96778 0.97942 1.21275 0.96201 0.95211 0.98377 1.21744 1.02596 1.02658 0.91443 1.17855 0.96474 0.94699 0.85443 1.46091 1.50967 1.25056 1.06434 1.22659 1.03869 0.98429 0.79075 1.22673 1.00018 0.94658 0.98143 1.22420 1.03501 1.04197 0.88290 1.22078 0.76062 0.78969 0.93722 1.90602 1.53641 1.53730 1.45670 1.20773 0.99174 0.96499 0.98920 0.92754 0.99144 0.99006 0.86595 0.86773 0.90020 0.89991 0.84295 0.83175 0.83917 0.88597 0.88874 0.88736 0.85673 0.86321 0.85580 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 4 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.05 4.26 29.85 0.13 2.17 16 10 C -0.09 -3.77 5.75 29.85 0.17 -3.60 16 11 C 0.47 18.12 7.96 71.24 0.57 18.69 16 12 O -0.54 -24.89 15.73 21.96 0.35 -24.54 16 13 O -0.35 -11.27 10.20 -51.39 -0.52 -11.79 16 14 C 0.10 2.75 5.59 71.24 0.40 3.14 16 15 C -0.07 -1.73 5.52 -19.89 -0.11 -1.84 16 16 C -0.12 -2.70 9.70 22.29 0.22 -2.48 16 17 C -0.09 -1.91 10.04 22.25 0.22 -1.69 16 18 C -0.16 -3.89 9.29 22.39 0.21 -3.68 16 19 C 0.15 3.30 6.60 38.15 0.25 3.56 16 20 N -0.56 -9.81 3.14 -627.69 -1.97 -11.78 16 21 C 0.08 0.70 6.51 86.83 0.57 1.27 16 22 C -0.12 -0.36 7.18 31.65 0.23 -0.13 16 23 C -0.14 -1.06 6.86 30.59 0.21 -0.85 16 24 C 0.50 9.25 7.92 87.90 0.70 9.94 16 25 O -0.56 -14.83 14.82 -3.06 -0.05 -14.88 16 26 C -0.13 -2.84 9.07 22.39 0.20 -2.64 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H -0.01 -0.59 8.10 -2.38 -0.02 -0.61 16 29 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 30 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 31 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 33 H 0.08 2.08 8.08 -2.38 -0.02 2.07 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.14 3.75 5.26 -2.91 -0.02 3.73 16 37 H 0.10 0.71 7.24 -2.38 -0.02 0.69 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.14 2.49 6.75 -2.91 -0.02 2.47 16 Total: -1.00 -78.56 365.58 5.78 -72.78 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.02 Total: 10.03 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.65 Total: -7.77 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -1.68 Total: -69.31 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.22 Total: -51.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -78.56 5.78 -72.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813092933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.957 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds