Wall clock time and date at job start Tue Mar 31 2020 11:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47049 * 269.99942 * 3 2 1 5 5 H 1.48501 * 109.47297 * 29.99825 * 3 2 1 6 6 H 1.48495 * 109.47470 * 149.99855 * 3 2 1 7 7 C 1.37875 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00189 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99883 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47247 * 180.02562 * 9 7 2 11 11 O 1.45191 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.34229 * 117.00208 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99700 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00498 * 179.97438 * 12 11 10 15 15 H 1.08995 * 109.39794 * 59.82225 * 14 12 11 16 16 C 1.53063 * 109.40378 * 179.57332 * 14 12 11 17 17 C 1.53365 * 108.41398 * 169.04176 * 16 14 12 18 18 C 1.52927 * 108.65728 * 292.43824 * 17 16 14 19 19 N 1.45748 * 110.48424 * 50.76838 * 18 17 16 20 20 C 1.39930 * 117.94603 * 160.92288 * 19 18 17 21 21 C 1.38868 * 120.07109 * 89.07332 * 20 19 18 22 22 C 1.38114 * 119.92861 * 179.72438 * 21 20 19 23 23 C 1.38285 * 120.07101 * 0.57137 * 22 21 20 24 24 C 1.38288 * 120.13696 * 359.67791 * 23 22 21 25 25 C 1.38111 * 120.07342 * 0.04604 * 24 23 22 26 26 C 1.33357 * 124.10896 * 340.94377 * 19 18 17 27 27 O 1.21289 * 118.24469 * 182.20631 * 26 19 18 28 28 H 0.97001 * 120.00647 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47494 * 59.99926 * 9 7 2 30 30 H 1.08998 * 109.47072 * 299.99847 * 9 7 2 31 31 H 1.08998 * 109.46912 * 299.99886 * 10 9 7 32 32 H 1.08994 * 109.46982 * 59.99554 * 10 9 7 33 33 H 1.09009 * 109.67295 * 288.76031 * 16 14 12 34 34 H 1.08999 * 109.67562 * 49.28988 * 16 14 12 35 35 H 1.09001 * 109.59945 * 172.70170 * 17 16 14 36 36 H 1.08992 * 109.75598 * 52.27716 * 17 16 14 37 37 H 1.08996 * 109.30106 * 290.45209 * 18 17 16 38 38 H 1.09005 * 109.13027 * 170.96870 * 18 17 16 39 39 H 1.08000 * 120.03506 * 359.97438 * 21 20 19 40 40 H 1.08003 * 119.96513 * 180.25674 * 22 21 20 41 41 H 1.07992 * 119.92864 * 179.70575 * 23 22 21 42 42 H 1.08000 * 119.96252 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.03658 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4735 -2.6365 0.0009 12 6 6.0829 -3.8325 0.0014 13 8 5.4249 -4.8458 0.0022 14 6 7.5879 -3.9114 0.0008 15 1 7.9768 -3.4137 0.8890 16 6 8.0201 -5.3797 0.0122 17 6 9.5271 -5.4432 -0.2652 18 6 9.7789 -4.9944 -1.7053 19 7 9.1181 -3.7217 -1.9658 20 6 9.5559 -2.9673 -3.0600 21 6 8.9892 -3.1642 -4.3124 22 6 9.4196 -2.4140 -5.3891 23 6 10.4221 -1.4759 -5.2236 24 6 10.9921 -1.2812 -3.9788 25 6 10.5621 -2.0242 -2.8969 26 6 8.1226 -3.2309 -1.2266 27 8 7.6219 -2.1789 -1.5638 28 1 -0.4851 0.8400 0.0004 29 1 3.8745 -0.6800 0.8910 30 1 3.8752 -0.6804 -0.8888 31 1 3.6579 -3.1505 0.8907 32 1 3.6585 -3.1501 -0.8892 33 1 7.8078 -5.8171 0.9878 34 1 7.4809 -5.9270 -0.7610 35 1 9.8802 -6.4661 -0.1340 36 1 10.0563 -4.7827 0.4216 37 1 9.3917 -5.7484 -2.3905 38 1 10.8517 -4.8820 -1.8620 39 1 8.2098 -3.9003 -4.4434 40 1 8.9764 -2.5637 -6.3626 41 1 10.7602 -0.8940 -6.0681 42 1 11.7745 -0.5475 -3.8526 43 1 11.0080 -1.8719 -1.9251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814606243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:18 Heat of formation + Delta-G solvation = -112.101149 kcal Electronic energy + Delta-G solvation = -26336.233219 eV Core-core repulsion = 22538.619334 eV Total energy + Delta-G solvation = -3797.613885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52979 -41.28495 -39.53721 -38.12307 -37.45142 -35.46000 -35.23511 -32.87583 -31.91387 -31.42128 -30.33850 -27.61153 -26.15337 -24.66557 -23.61196 -23.07238 -22.62414 -22.16413 -20.00542 -19.43195 -18.78223 -18.58120 -18.08108 -17.59770 -17.20841 -16.98828 -16.63062 -16.33435 -15.94953 -15.32343 -15.21203 -15.07587 -14.90325 -14.59300 -14.48519 -14.38053 -14.32056 -13.60446 -13.36198 -13.30931 -13.02312 -12.73010 -12.55263 -12.53868 -12.41655 -12.32495 -12.22114 -11.93233 -11.85335 -11.63797 -11.54499 -11.50100 -10.93805 -10.85745 -10.03360 -9.92290 -9.78628 -8.39036 -6.46708 0.23609 0.40939 0.82822 1.22467 1.33667 1.34130 1.48118 1.71275 1.84007 2.30164 2.74565 2.95375 3.27706 3.32084 3.62815 3.73322 3.95485 4.00000 4.01894 4.08924 4.11728 4.11939 4.21719 4.33233 4.46635 4.50208 4.55692 4.60177 4.74520 4.77117 4.96476 4.97193 5.03681 5.04117 5.21724 5.25719 5.34729 5.43015 5.47394 5.48320 5.53671 5.54490 6.01520 6.11099 6.15472 6.56296 6.58216 6.94055 7.18382 8.76935 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.003570 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.846496 B = 7840.550815 C = 9420.695610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.542 4.542 8 H 0.039 0.961 9 C -0.002 4.002 10 C 0.093 3.907 11 O -0.349 6.349 12 C 0.466 3.534 13 O -0.527 6.527 14 C -0.089 4.089 15 H 0.167 0.833 16 C -0.106 4.106 17 C -0.121 4.121 18 C 0.102 3.898 19 N -0.555 5.555 20 C 0.113 3.887 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.119 4.119 26 C 0.519 3.481 27 O -0.559 6.559 28 H 0.272 0.728 29 H 0.035 0.965 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.234 -10.206 -5.534 34.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.580 4.580 8 H 0.058 0.942 9 C -0.039 4.039 10 C 0.020 3.980 11 O -0.265 6.265 12 C 0.309 3.691 13 O -0.417 6.417 14 C -0.110 4.110 15 H 0.185 0.815 16 C -0.144 4.144 17 C -0.158 4.158 18 C -0.018 4.018 19 N -0.285 5.285 20 C 0.023 3.977 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.138 4.138 26 C 0.307 3.693 27 O -0.436 6.436 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 31.563 -9.870 -5.666 33.552 hybrid contribution -0.950 0.555 -0.063 1.102 sum 30.613 -9.315 -5.729 32.508 Atomic orbital electron populations 1.70018 1.08047 1.28661 1.51219 1.25858 0.95659 1.03242 0.93377 0.85675 0.79474 0.78246 0.79439 1.19212 1.19726 1.17419 1.21077 0.90334 0.93996 1.52543 0.94233 1.19428 0.94460 0.92047 0.97973 1.22966 0.74205 0.99805 1.01066 1.86601 1.24329 1.33224 1.82298 1.23604 0.92198 0.81282 0.71966 1.90635 1.67623 1.36878 1.46538 1.21343 0.86962 1.02722 0.99994 0.81541 1.21717 0.97765 0.89383 1.05510 1.21958 0.93526 1.05721 0.94632 1.21934 0.98878 0.82269 0.98698 1.44954 1.34688 1.22090 1.26807 1.17771 0.97021 0.95870 0.86995 1.21441 0.99650 1.00848 0.93000 1.21356 0.97465 0.95933 0.99020 1.21598 0.95878 0.97592 0.98467 1.21418 1.00529 0.99169 0.92191 1.21471 0.96776 0.95259 1.00317 1.19826 0.79825 0.85103 0.84585 1.90869 1.57751 1.24637 1.70359 0.91895 0.94714 0.95942 0.91552 0.93023 0.87833 0.91207 0.85355 0.88884 0.90479 0.87749 0.86780 0.83924 0.83071 0.83011 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.02 1.04 5.47 84.65 0.46 1.50 16 3 Si 0.95 46.34 27.47 68.60 1.88 48.23 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 7 C -0.54 -33.13 9.66 25.60 0.25 -32.88 16 8 H 0.04 2.62 7.99 -2.91 -0.02 2.59 16 9 C 0.00 -0.08 4.42 29.85 0.13 0.05 16 10 C 0.09 4.42 5.40 71.98 0.39 4.81 16 11 O -0.35 -15.08 9.19 -45.69 -0.42 -15.50 16 12 C 0.47 16.76 7.14 71.24 0.51 17.27 16 13 O -0.53 -20.67 15.54 21.97 0.34 -20.33 16 14 C -0.09 -2.14 2.86 -12.43 -0.04 -2.18 16 15 H 0.17 3.06 8.14 -2.39 -0.02 3.04 16 16 C -0.11 -1.65 4.78 30.74 0.15 -1.50 16 17 C -0.12 -0.88 6.02 30.69 0.18 -0.69 16 18 C 0.10 1.12 6.34 86.50 0.55 1.67 16 19 N -0.56 -11.66 2.85 -635.80 -1.81 -13.47 16 20 C 0.11 2.55 4.01 38.15 0.15 2.70 16 21 C -0.13 -2.96 9.97 22.39 0.22 -2.74 16 22 C -0.12 -2.21 10.04 22.25 0.22 -1.99 16 23 C -0.12 -1.84 10.04 22.29 0.22 -1.61 16 24 C -0.11 -1.83 10.04 22.25 0.22 -1.60 16 25 C -0.12 -2.30 9.97 22.39 0.22 -2.08 16 26 C 0.52 14.73 7.00 87.71 0.61 15.34 16 27 O -0.56 -22.06 15.35 13.35 0.20 -21.85 16 28 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 29 H 0.03 1.77 7.20 -2.39 -0.02 1.76 16 30 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 31 H 0.07 3.08 8.13 -2.39 -0.02 3.06 16 32 H 0.05 2.53 8.13 -2.39 -0.02 2.51 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.07 1.33 7.72 -2.39 -0.02 1.32 16 35 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.09 0.47 8.13 -2.39 -0.02 0.45 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.70 8.09 -2.38 -0.02 0.68 16 39 H 0.11 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -83.55 362.41 5.91 -77.63 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.94 Total: 8.99 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 4.47 Total: -3.93 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.51 Total: -73.23 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: 0.13 Total: -57.68 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.88 Total: 48.23 kcal Total: -83.55 5.91 -77.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814606243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.469 kcal (2) G-P(sol) polarization free energy of solvation -83.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds