Wall clock time and date at job start Tue Mar 31 2020 11:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34245 * 125.03388 * 2 1 4 4 C 1.46486 * 106.99583 * 179.97438 * 3 2 1 5 5 C 1.39630 * 134.02755 * 179.97438 * 4 3 2 6 6 C 1.36627 * 119.76464 * 180.02562 * 5 4 3 7 7 C 1.38829 * 120.52407 * 0.02562 * 6 5 4 8 8 C 1.37746 * 120.67245 * 0.24182 * 7 6 5 9 9 C 1.39133 * 119.77801 * 359.51605 * 8 7 6 10 10 N 1.36827 * 125.03617 * 179.97438 * 2 1 3 11 11 C 1.46501 * 125.06429 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.46914 * 270.02309 * 11 10 2 13 13 O 1.20830 * 120.00002 * 359.97438 * 12 11 10 14 14 O 1.34226 * 119.99874 * 179.97438 * 12 11 10 15 15 C 1.45203 * 117.00025 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47070 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.47354 * 65.00259 * 16 15 14 18 18 C 1.42902 * 113.99833 * 180.02562 * 17 16 15 19 19 C 1.50708 * 109.46803 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99646 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99650 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99790 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47019 * 90.00212 * 23 21 19 25 25 H 1.48498 * 109.47142 * 210.00018 * 23 21 19 26 26 H 1.48500 * 109.46707 * 330.00020 * 23 21 19 27 27 H 1.08999 * 109.47270 * 269.99670 * 1 2 3 28 28 H 1.08999 * 109.47281 * 29.99985 * 1 2 3 29 29 H 1.08999 * 109.46885 * 150.00332 * 1 2 3 30 30 H 1.08000 * 126.49876 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.11927 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.73526 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.66319 * 179.97438 * 7 6 5 34 34 H 1.07998 * 120.11741 * 179.68285 * 8 7 6 35 35 H 1.08997 * 109.46752 * 30.02161 * 11 10 2 36 36 H 1.08999 * 109.47445 * 150.02208 * 11 10 2 37 37 H 1.09001 * 109.47082 * 299.99870 * 15 14 12 38 38 H 1.09003 * 109.47028 * 59.99999 * 15 14 12 39 39 H 1.09005 * 109.46988 * 184.99957 * 16 15 14 40 40 H 1.09004 * 109.46943 * 304.99785 * 16 15 14 41 41 H 1.08999 * 109.46703 * 299.99300 * 18 17 16 42 42 H 1.08995 * 109.47602 * 59.99459 * 18 17 16 43 43 H 0.97003 * 120.00142 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 0.0006 5 6 4.9041 1.2997 0.0005 6 6 6.0589 0.5696 0.0007 7 6 6.0159 -0.8180 0.0006 8 6 4.8099 -1.4836 -0.0048 9 6 3.6214 -0.7603 0.0000 10 7 2.2925 -1.1203 0.0005 11 6 1.7938 -2.4979 0.0017 12 6 1.6229 -2.9690 1.4229 13 8 1.8906 -2.2300 2.3406 14 8 1.1732 -4.2094 1.6692 15 6 1.0336 -4.5956 3.0620 16 6 0.5135 -6.0321 3.1433 17 8 1.4893 -6.9235 2.5999 18 6 1.0999 -8.2982 2.6274 19 6 2.1973 -9.1430 2.0329 20 1 3.1016 -8.6768 1.6707 21 6 2.0470 -10.5112 1.9524 22 7 0.9464 -11.0791 2.3948 23 14 3.4074 -11.5585 1.2161 24 1 4.3472 -11.9742 2.2880 25 1 2.8159 -12.7637 0.5816 26 1 4.1405 -10.7699 0.1933 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9355 2.1236 -0.0004 31 1 4.9453 2.3790 -0.0007 32 1 7.0128 1.0761 0.0010 33 1 6.9374 -1.3813 0.0003 34 1 4.7869 -2.5633 -0.0100 35 1 0.8334 -2.5369 -0.5121 36 1 2.5070 -3.1429 -0.5116 37 1 2.0034 -4.5322 3.5555 38 1 0.3300 -3.9255 3.5560 39 1 0.3244 -6.2917 4.1849 40 1 -0.4123 -6.1161 2.5741 41 1 0.9228 -8.6050 3.6582 42 1 0.1865 -8.4289 2.0474 43 1 0.8406 -12.0416 2.3378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815183540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:01 Heat of formation + Delta-G solvation = -72.195280 kcal Electronic energy + Delta-G solvation = -25409.140749 eV Core-core repulsion = 21613.257313 eV Total energy + Delta-G solvation = -3795.883437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73446 -40.27309 -37.50840 -37.03463 -36.11144 -33.39612 -32.81926 -31.51528 -30.70920 -30.08820 -27.70359 -26.96731 -26.57725 -22.97248 -22.40131 -22.04510 -21.67854 -21.25484 -19.78589 -18.05821 -17.39439 -16.87147 -16.61772 -16.38941 -16.20976 -15.49744 -15.26787 -14.81611 -14.68528 -14.46783 -14.20009 -14.01999 -13.59275 -13.39820 -13.23098 -13.19042 -12.85233 -12.67241 -12.54653 -12.23381 -12.01512 -11.65767 -11.56433 -11.49390 -11.01911 -10.96275 -10.89707 -10.83219 -10.56390 -10.48939 -10.10449 -9.75136 -9.18621 -8.93923 -8.27520 -8.23510 -7.78833 -6.16603 -4.18637 0.99952 1.47484 2.02972 2.12073 2.53348 2.89234 3.26992 3.32152 3.37281 3.83290 4.27231 4.32667 4.37365 4.48047 4.56398 4.67326 4.73230 4.89399 4.94968 5.04696 5.11522 5.20105 5.24028 5.30102 5.34088 5.36382 5.40951 5.57619 5.70376 5.77017 5.82642 5.84042 5.95786 5.97725 6.35594 6.41583 6.50402 6.62954 6.68428 6.98999 7.01763 7.08772 7.33684 7.64292 7.73012 8.06883 8.45729 8.93582 9.46393 10.94893 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.002572 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.841738 B =10881.906208 C =12052.154697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.089 3.911 3 C -0.202 4.202 4 C -0.102 4.102 5 C -0.075 4.075 6 C -0.146 4.146 7 C -0.101 4.101 8 C -0.125 4.125 9 C 0.106 3.894 10 N -0.469 5.469 11 C 0.116 3.884 12 C 0.439 3.561 13 O -0.496 6.496 14 O -0.338 6.338 15 C 0.076 3.924 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.194 3.806 19 C -0.516 4.516 20 H 0.067 0.933 21 C 0.057 3.943 22 N -0.898 5.898 23 Si 0.909 3.091 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.271 1.271 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.006 0.994 42 H 0.008 0.992 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 24.418 -6.089 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.227 4.227 4 C -0.107 4.107 5 C -0.094 4.094 6 C -0.166 4.166 7 C -0.120 4.120 8 C -0.146 4.146 9 C 0.002 3.998 10 N -0.154 5.154 11 C -0.007 4.007 12 C 0.279 3.721 13 O -0.383 6.383 14 O -0.254 6.254 15 C 0.002 3.998 16 C -0.016 4.016 17 O -0.311 6.311 18 C 0.120 3.880 19 C -0.554 4.554 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.736 3.264 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.758 24.178 -5.834 24.883 hybrid contribution 0.327 -0.929 0.101 0.990 sum 1.085 23.249 -5.733 23.970 Atomic orbital electron populations 1.20526 0.87806 1.03688 1.03383 1.20310 0.93486 0.85135 1.02729 1.21392 0.90321 0.97443 1.13522 1.19156 0.93700 0.91801 1.06019 1.20233 0.90445 0.99341 0.99341 1.20623 0.97935 0.93964 1.04031 1.20801 0.96676 0.94442 1.00071 1.20103 0.89831 0.99267 1.05372 1.18187 0.83866 0.94074 1.03707 1.43359 1.04208 1.04046 1.63814 1.21108 1.04865 0.82553 0.92215 1.23934 0.74641 0.80784 0.92742 1.90715 1.45771 1.55549 1.46262 1.86580 1.76128 1.30743 1.31925 1.23265 1.02604 0.95504 0.78392 1.22323 0.93175 0.87643 0.98445 1.87916 1.41288 1.19314 1.82597 1.20247 0.96404 0.75323 0.95988 1.21038 1.03023 0.91008 1.40357 0.91516 1.24950 0.96322 0.97623 0.95577 1.69956 1.26058 1.11049 1.46685 0.86323 0.81358 0.79418 0.79329 1.20426 1.21023 1.19580 0.90310 0.89479 0.91303 0.83563 0.86167 0.86129 0.85710 0.86271 0.85052 0.84989 0.90409 0.90355 0.91801 0.93118 0.97585 0.97461 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.03 36.00 0.36 -0.35 16 2 C 0.09 0.96 6.83 -81.77 -0.56 0.40 16 3 C -0.20 -2.24 10.95 -37.67 -0.41 -2.66 16 4 C -0.10 -1.29 6.37 -105.14 -0.67 -1.96 16 5 C -0.08 -0.82 10.05 -39.64 -0.40 -1.22 16 6 C -0.15 -1.50 9.97 -39.94 -0.40 -1.90 16 7 C -0.10 -1.10 10.01 -39.54 -0.40 -1.49 16 8 C -0.13 -1.55 9.96 -39.43 -0.39 -1.95 16 9 C 0.11 1.40 6.81 -83.98 -0.57 0.83 16 10 N -0.47 -5.63 2.27 -111.13 -0.25 -5.89 16 11 C 0.12 1.22 6.37 -5.19 -0.03 1.19 16 12 C 0.44 6.19 8.03 36.01 0.29 6.48 16 13 O -0.50 -8.38 16.18 -18.75 -0.30 -8.69 16 14 O -0.34 -5.30 10.19 -42.01 -0.43 -5.72 16 15 C 0.08 1.17 5.84 37.16 0.22 1.39 16 16 C 0.06 1.09 6.33 37.16 0.24 1.33 16 17 O -0.39 -9.28 10.30 -38.79 -0.40 -9.68 16 18 C 0.19 5.24 5.69 36.01 0.20 5.44 16 19 C -0.52 -15.04 9.43 -34.44 -0.32 -15.37 16 20 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 23 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.42 6.92 -51.93 -0.36 0.06 16 30 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.13 0.96 6.88 -51.93 -0.36 0.60 16 36 H 0.13 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -35.27 374.65 -9.15 -44.42 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.18 Total: -2.56 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.95 Total: -8.30 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.48 Total: -31.68 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -1.13 Total: -24.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.27 -9.15 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815183540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.779 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds