Wall clock time and date at job start Tue Mar 31 2020 11:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34245 * 125.03388 * 2 1 4 4 C 1.46486 * 106.99583 * 179.97438 * 3 2 1 5 5 C 1.39630 * 134.02755 * 179.97438 * 4 3 2 6 6 C 1.36627 * 119.76464 * 180.02562 * 5 4 3 7 7 C 1.38829 * 120.52407 * 0.02562 * 6 5 4 8 8 C 1.37746 * 120.67245 * 0.24182 * 7 6 5 9 9 C 1.39133 * 119.77801 * 359.51605 * 8 7 6 10 10 N 1.36827 * 125.03617 * 179.97438 * 2 1 3 11 11 C 1.46501 * 125.06429 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.46914 * 270.02309 * 11 10 2 13 13 O 1.20830 * 120.00002 * 359.97438 * 12 11 10 14 14 O 1.34226 * 119.99874 * 179.97438 * 12 11 10 15 15 C 1.45203 * 117.00025 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47070 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.47354 * 65.00259 * 16 15 14 18 18 C 1.42902 * 113.99833 * 180.02562 * 17 16 15 19 19 C 1.50708 * 109.46803 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99646 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99650 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99790 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47019 * 90.00212 * 23 21 19 25 25 H 1.48498 * 109.47142 * 210.00018 * 23 21 19 26 26 H 1.48500 * 109.46707 * 330.00020 * 23 21 19 27 27 H 1.08999 * 109.47270 * 269.99670 * 1 2 3 28 28 H 1.08999 * 109.47281 * 29.99985 * 1 2 3 29 29 H 1.08999 * 109.46885 * 150.00332 * 1 2 3 30 30 H 1.08000 * 126.49876 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.11927 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.73526 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.66319 * 179.97438 * 7 6 5 34 34 H 1.07998 * 120.11741 * 179.68285 * 8 7 6 35 35 H 1.08997 * 109.46752 * 30.02161 * 11 10 2 36 36 H 1.08999 * 109.47445 * 150.02208 * 11 10 2 37 37 H 1.09001 * 109.47082 * 299.99870 * 15 14 12 38 38 H 1.09003 * 109.47028 * 59.99999 * 15 14 12 39 39 H 1.09005 * 109.46988 * 184.99957 * 16 15 14 40 40 H 1.09004 * 109.46943 * 304.99785 * 16 15 14 41 41 H 1.08999 * 109.46703 * 299.99300 * 18 17 16 42 42 H 1.08995 * 109.47602 * 59.99459 * 18 17 16 43 43 H 0.97003 * 120.00142 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 0.0006 5 6 4.9041 1.2997 0.0005 6 6 6.0589 0.5696 0.0007 7 6 6.0159 -0.8180 0.0006 8 6 4.8099 -1.4836 -0.0048 9 6 3.6214 -0.7603 0.0000 10 7 2.2925 -1.1203 0.0005 11 6 1.7938 -2.4979 0.0017 12 6 1.6229 -2.9690 1.4229 13 8 1.8906 -2.2300 2.3406 14 8 1.1732 -4.2094 1.6692 15 6 1.0336 -4.5956 3.0620 16 6 0.5135 -6.0321 3.1433 17 8 1.4893 -6.9235 2.5999 18 6 1.0999 -8.2982 2.6274 19 6 2.1973 -9.1430 2.0329 20 1 3.1016 -8.6768 1.6707 21 6 2.0470 -10.5112 1.9524 22 7 0.9464 -11.0791 2.3948 23 14 3.4074 -11.5585 1.2161 24 1 4.3472 -11.9742 2.2880 25 1 2.8159 -12.7637 0.5816 26 1 4.1405 -10.7699 0.1933 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9355 2.1236 -0.0004 31 1 4.9453 2.3790 -0.0007 32 1 7.0128 1.0761 0.0010 33 1 6.9374 -1.3813 0.0003 34 1 4.7869 -2.5633 -0.0100 35 1 0.8334 -2.5369 -0.5121 36 1 2.5070 -3.1429 -0.5116 37 1 2.0034 -4.5322 3.5555 38 1 0.3300 -3.9255 3.5560 39 1 0.3244 -6.2917 4.1849 40 1 -0.4123 -6.1161 2.5741 41 1 0.9228 -8.6050 3.6582 42 1 0.1865 -8.4289 2.0474 43 1 0.8406 -12.0416 2.3378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815183540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:00 Heat of formation + Delta-G solvation = -91.516320 kcal Electronic energy + Delta-G solvation = -25409.978573 eV Core-core repulsion = 21613.257313 eV Total energy + Delta-G solvation = -3796.721260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59537 -41.40584 -38.84764 -38.17908 -37.46963 -34.97065 -34.23722 -32.29417 -31.82586 -31.22401 -29.17461 -28.38104 -27.39275 -24.62994 -24.06842 -23.05661 -22.50019 -22.32584 -20.62714 -19.17330 -18.73343 -18.26610 -18.07065 -17.49401 -17.32813 -17.05356 -16.43007 -16.26292 -16.04447 -15.70266 -15.20647 -15.03930 -14.88760 -14.49320 -14.21694 -14.03142 -13.84944 -13.77013 -13.57607 -13.31032 -13.25315 -13.01861 -12.92920 -12.72520 -12.52051 -12.39407 -12.38388 -12.04087 -11.84083 -11.77251 -11.66868 -11.30675 -10.92012 -10.60810 -10.30069 -9.08569 -8.60962 -8.34105 -6.46316 0.16495 0.60230 0.93054 1.19525 1.39770 1.41981 1.54102 1.72957 1.94544 2.32943 2.97614 3.00057 3.01372 3.43405 3.60900 3.64213 3.75579 3.85617 3.98683 4.04026 4.10600 4.23871 4.34498 4.43478 4.46250 4.50879 4.56145 4.60782 4.63976 4.70909 4.83038 4.94941 5.02672 5.06541 5.15199 5.15956 5.24912 5.52391 5.53885 5.67785 5.81615 5.88826 5.92969 6.21887 6.25545 6.46474 6.53705 6.77043 7.25386 8.77992 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.002572 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.841738 B =10881.906208 C =12052.154697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.080 3.920 3 C -0.217 4.217 4 C -0.127 4.127 5 C -0.083 4.083 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.148 4.148 9 C 0.077 3.923 10 N -0.476 5.476 11 C 0.118 3.882 12 C 0.443 3.557 13 O -0.527 6.527 14 O -0.351 6.351 15 C 0.080 3.920 16 C 0.054 3.946 17 O -0.409 6.409 18 C 0.208 3.792 19 C -0.551 4.551 20 H 0.060 0.940 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.981 3.019 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.265 1.265 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.167 0.833 36 H 0.144 0.856 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.061 0.939 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 25.093 -7.009 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C -0.241 4.241 4 C -0.132 4.132 5 C -0.102 4.102 6 C -0.168 4.168 7 C -0.126 4.126 8 C -0.169 4.169 9 C -0.027 4.027 10 N -0.161 5.161 11 C -0.006 4.006 12 C 0.285 3.715 13 O -0.416 6.416 14 O -0.266 6.266 15 C 0.007 3.993 16 C -0.023 4.023 17 O -0.330 6.330 18 C 0.133 3.867 19 C -0.588 4.588 20 H 0.078 0.922 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.804 3.196 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.189 1.189 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.185 0.815 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.185 0.815 36 H 0.162 0.838 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.062 24.876 -6.754 25.798 hybrid contribution 0.208 -1.041 0.427 1.144 sum 1.270 23.835 -6.327 24.693 Atomic orbital electron populations 1.20639 0.85415 1.05501 1.03614 1.20917 0.95041 0.84739 1.01815 1.21753 0.89841 0.98677 1.13802 1.19608 0.95043 0.92001 1.06523 1.20592 0.90155 1.00629 0.98795 1.20983 0.99010 0.93806 1.03034 1.21140 0.96944 0.95187 0.99336 1.20307 0.90493 0.99475 1.06627 1.18525 0.84646 0.94833 1.04721 1.43537 1.04051 1.04687 1.63854 1.21370 1.06969 0.82258 0.89955 1.24630 0.73232 0.79722 0.93907 1.90697 1.47217 1.56151 1.47583 1.86577 1.76440 1.31779 1.31843 1.23197 1.02755 0.94515 0.78853 1.22641 0.92551 0.87709 0.99350 1.87859 1.43408 1.18348 1.83351 1.19875 0.95230 0.77066 0.94494 1.21379 1.03560 0.92233 1.41646 0.92187 1.25925 0.98939 0.98718 0.95477 1.70052 1.27862 1.11795 1.47074 0.85209 0.78105 0.77551 0.78724 1.19405 1.19802 1.18891 0.90686 0.87303 0.89928 0.81541 0.84009 0.83456 0.83848 0.86386 0.81543 0.83838 0.91517 0.87320 0.90086 0.92084 0.99089 0.99035 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.03 71.24 0.71 -0.48 16 2 C 0.08 1.64 6.83 40.87 0.28 1.92 16 3 C -0.22 -4.64 10.95 23.51 0.26 -4.38 16 4 C -0.13 -3.18 6.37 -20.20 -0.13 -3.31 16 5 C -0.08 -1.74 10.05 22.23 0.22 -1.52 16 6 C -0.15 -2.89 9.97 22.03 0.22 -2.67 16 7 C -0.11 -2.29 10.01 22.29 0.22 -2.06 16 8 C -0.15 -3.74 9.96 22.37 0.22 -3.52 16 9 C 0.08 2.05 6.81 39.03 0.27 2.32 16 10 N -0.48 -11.17 2.27 -505.52 -1.15 -12.32 16 11 C 0.12 2.36 6.37 85.63 0.55 2.90 16 12 C 0.44 12.28 8.03 71.24 0.57 12.85 16 13 O -0.53 -17.83 16.18 21.95 0.36 -17.47 16 14 O -0.35 -10.78 10.19 -48.73 -0.50 -11.28 16 15 C 0.08 2.43 5.84 71.98 0.42 2.85 16 16 C 0.05 1.90 6.33 71.98 0.46 2.36 16 17 O -0.41 -19.71 10.30 -145.57 -1.50 -21.21 16 18 C 0.21 11.47 5.69 71.24 0.41 11.87 16 19 C -0.55 -32.53 9.43 25.60 0.24 -32.29 16 20 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 21 C 0.01 0.47 5.46 84.65 0.46 0.93 16 22 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 23 Si 0.98 43.87 29.54 68.60 2.03 45.90 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.80 6.92 -2.39 -0.02 0.78 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.17 2.07 6.88 -2.39 -0.02 2.05 16 36 H 0.14 2.53 8.10 -2.39 -0.02 2.51 16 37 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 38 H 0.11 2.63 8.13 -2.39 -0.02 2.61 16 39 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -76.80 374.65 5.91 -70.89 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.00 Total: 12.41 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.38 Total: -12.23 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.86 Total: -67.01 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.64 Total: -49.96 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -76.80 5.91 -70.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815183540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.627 kcal (2) G-P(sol) polarization free energy of solvation -76.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds