Wall clock time and date at job start Tue Mar 31 2020 11:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37704 * 119.67448 * 2 1 4 4 C 1.39196 * 119.81245 * 180.02562 * 3 2 1 5 5 N 1.37477 * 133.16952 * 180.02562 * 4 3 2 6 6 H 0.96993 * 125.61035 * 359.97089 * 5 4 3 7 7 C 1.38200 * 108.77891 * 179.97438 * 5 4 3 8 8 C 1.46893 * 125.43488 * 179.97438 * 7 5 4 9 9 O 1.21567 * 120.00186 * 179.97438 * 8 7 5 10 10 O 1.34850 * 119.99884 * 359.97177 * 8 7 5 11 11 C 1.45202 * 116.99642 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46857 * 180.02562 * 11 10 8 13 13 O 1.42896 * 109.47283 * 65.00098 * 12 11 10 14 14 C 1.42899 * 114.00028 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47002 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00255 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99651 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47341 * 59.99648 * 19 17 15 21 21 H 1.48496 * 109.47199 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46863 * 300.00000 * 19 17 15 23 23 C 1.35947 * 109.12468 * 359.74548 * 7 5 4 24 24 C 1.40897 * 119.42664 * 359.97438 * 4 3 2 25 25 C 1.40085 * 119.66337 * 0.02562 * 24 4 3 26 26 C 1.50704 * 120.08369 * 179.97438 * 25 24 4 27 27 C 1.36465 * 119.82878 * 359.97438 * 25 24 4 28 28 H 1.09003 * 109.46986 * 269.97028 * 1 2 3 29 29 H 1.08992 * 109.47209 * 29.97904 * 1 2 3 30 30 H 1.08999 * 109.46808 * 149.97618 * 1 2 3 31 31 H 1.08004 * 120.09647 * 0.02778 * 3 2 1 32 32 H 1.08999 * 109.47399 * 300.00061 * 11 10 8 33 33 H 1.08996 * 109.47583 * 60.00286 * 11 10 8 34 34 H 1.09002 * 109.47170 * 185.00390 * 12 11 10 35 35 H 1.08999 * 109.47015 * 305.00186 * 12 11 10 36 36 H 1.08994 * 109.47320 * 299.99932 * 14 13 12 37 37 H 1.09005 * 109.47401 * 60.00001 * 14 13 12 38 38 H 0.96998 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.08004 * 126.13822 * 180.30299 * 23 7 5 40 40 H 1.08992 * 109.47442 * 90.00047 * 26 25 24 41 41 H 1.09004 * 109.46736 * 210.00017 * 26 25 24 42 42 H 1.08999 * 109.46792 * 329.99548 * 26 25 24 43 43 H 1.07998 * 119.68807 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.1964 0.0000 4 6 3.5807 1.1998 -0.0005 5 7 4.5188 2.2047 -0.0002 6 1 4.3278 3.1557 0.0001 7 6 5.7788 1.6371 -0.0005 8 6 7.0470 2.3784 -0.0009 9 8 8.1031 1.7764 -0.0006 10 8 7.0396 3.7269 -0.0015 11 6 8.3297 4.3931 -0.0012 12 6 8.1210 5.9088 -0.0014 13 8 7.4917 6.3032 1.2194 14 6 7.2496 7.7078 1.3213 15 6 6.5861 8.0088 2.6405 16 1 6.3713 7.2077 3.3321 17 6 6.2534 9.3071 2.9644 18 7 6.5155 10.2828 2.1224 19 14 5.4317 9.6804 4.5999 20 1 6.3196 9.2500 5.7097 21 1 5.1788 11.1399 4.7052 22 1 4.1428 8.9478 4.6848 23 6 5.6573 0.2830 0.0047 24 6 4.2759 -0.0257 -0.0005 25 6 3.5592 -1.2294 -0.0005 26 6 4.2931 -2.5456 -0.0011 27 6 2.1947 -1.2069 0.0000 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6450 2.1296 0.0005 32 1 8.8880 4.1037 0.8891 33 1 8.8888 4.1029 -0.8908 34 1 9.0856 6.4085 -0.0908 35 1 7.4877 6.1883 -0.8433 36 1 8.1959 8.2451 1.2591 37 1 6.5979 8.0242 0.5067 38 1 6.2811 11.1960 2.3501 39 1 6.4692 -0.4293 0.0104 40 1 4.4705 -2.8632 1.0263 41 1 3.6925 -3.2962 -0.5149 42 1 5.2471 -2.4293 -0.5153 43 1 1.6444 -2.1362 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815184557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:24 Heat of formation + Delta-G solvation = -92.036832 kcal Electronic energy + Delta-G solvation = -25033.342029 eV Core-core repulsion = 21236.598198 eV Total energy + Delta-G solvation = -3796.743831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80708 -40.10111 -37.74363 -37.07771 -36.10358 -34.00317 -32.82726 -31.10522 -30.49655 -30.05071 -27.60923 -27.12189 -26.63949 -23.87008 -22.46711 -22.05346 -21.87358 -20.64628 -20.33784 -18.45159 -17.33334 -16.63477 -16.56455 -16.27679 -15.80267 -15.49261 -15.19466 -14.89612 -14.65108 -14.37129 -14.03873 -13.67198 -13.62011 -13.58435 -13.39807 -13.02480 -12.90273 -12.73614 -12.67039 -12.19368 -12.02403 -11.76980 -11.51113 -11.11439 -11.10625 -11.03447 -10.93682 -10.83418 -10.66108 -10.48399 -10.10817 -9.91669 -9.20081 -8.93752 -8.41420 -8.27546 -7.86740 -6.16811 -4.18961 0.46391 1.40487 1.76944 2.49025 2.87891 3.01030 3.28495 3.31344 3.35201 3.59171 4.27279 4.40529 4.57387 4.59284 4.68478 4.79763 4.95781 5.03465 5.11506 5.14161 5.19689 5.30361 5.35219 5.35919 5.38574 5.39949 5.43208 5.61846 5.66395 5.74255 5.78498 5.85570 5.93244 5.98062 6.28286 6.33379 6.39603 6.43779 6.46738 6.87600 6.98711 7.24467 7.33284 7.67541 7.72615 8.06688 8.45668 8.93083 9.45995 10.94598 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.002711 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.241374 B =10325.534252 C =12033.043056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.049 4.049 3 C -0.140 4.140 4 C 0.127 3.873 5 N -0.563 5.563 6 H 0.430 0.570 7 C 0.036 3.964 8 C 0.530 3.470 9 O -0.498 6.498 10 O -0.342 6.342 11 C 0.077 3.923 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.195 3.805 15 C -0.517 4.517 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.909 3.091 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.098 4.098 24 C -0.127 4.127 25 C -0.022 4.022 26 C -0.116 4.116 27 C -0.152 4.152 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.157 0.843 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 -23.121 -7.816 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.160 4.160 4 C 0.016 3.984 5 N -0.167 5.167 6 H 0.270 0.730 7 C -0.073 4.073 8 C 0.374 3.626 9 O -0.387 6.387 10 O -0.258 6.258 11 C 0.003 3.997 12 C -0.017 4.017 13 O -0.311 6.311 14 C 0.121 3.879 15 C -0.555 4.555 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.023 4.023 26 C -0.173 4.173 27 C -0.171 4.171 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.175 0.825 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.420 -22.985 -7.691 25.348 hybrid contribution -0.213 1.224 0.599 1.379 sum -7.633 -21.761 -7.092 24.127 Atomic orbital electron populations 1.20801 0.90817 1.02876 1.02527 1.19594 0.95834 0.92090 0.97574 1.19929 0.89704 0.98604 1.07813 1.18298 0.90877 0.87474 1.01800 1.42025 1.03580 1.09004 1.62069 0.73007 1.19067 0.82766 0.92093 1.13325 1.19953 0.87773 0.81484 0.73404 1.90882 1.31424 1.70016 1.46348 1.86653 1.36687 1.19173 1.83319 1.23293 0.81694 0.91766 1.02920 1.22338 0.98088 0.90737 0.90515 1.87919 1.79894 1.28492 1.34829 1.20237 0.95252 0.74907 0.97526 1.21001 1.39310 0.93159 1.02061 0.91592 1.24948 0.95919 0.95701 0.97861 1.69943 1.47507 1.00243 1.36030 0.86382 0.79884 0.77069 0.83080 1.19958 1.21090 1.19995 1.20841 0.95710 0.92460 1.03438 1.17943 0.92670 0.92492 1.10032 1.19145 0.93203 0.93373 0.96546 1.20802 1.00372 0.93530 1.02588 1.20380 0.93157 0.97452 1.06142 0.90925 0.91419 0.91365 0.85713 0.90130 0.90064 0.91666 0.93188 0.97541 0.97534 0.92518 0.82528 0.90817 0.91375 0.91242 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.99 36.00 0.36 -0.37 16 2 C -0.05 -0.45 5.88 -104.57 -0.61 -1.07 16 3 C -0.14 -1.47 9.71 -39.42 -0.38 -1.86 16 4 C 0.13 1.56 7.25 -83.97 -0.61 0.95 16 5 N -0.56 -7.19 6.19 -7.37 -0.05 -7.23 16 6 H 0.43 5.06 8.96 -40.82 -0.37 4.69 16 7 C 0.04 0.49 6.99 -82.31 -0.58 -0.08 16 8 C 0.53 8.25 7.94 34.23 0.27 8.52 16 9 O -0.50 -8.39 16.63 -19.32 -0.32 -8.71 16 10 O -0.34 -5.65 10.20 -43.69 -0.45 -6.09 16 11 C 0.08 1.19 5.86 37.16 0.22 1.41 16 12 C 0.06 1.08 6.33 37.16 0.24 1.32 16 13 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 14 C 0.19 5.26 5.69 36.01 0.20 5.47 16 15 C -0.52 -15.14 9.43 -34.44 -0.32 -15.47 16 16 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 19 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.10 -1.23 10.12 -39.14 -0.40 -1.62 16 24 C -0.13 -1.53 5.98 -106.93 -0.64 -2.17 16 25 C -0.02 -0.22 5.88 -104.57 -0.62 -0.83 16 26 C -0.12 -0.85 9.92 36.01 0.36 -0.49 16 27 C -0.15 -1.37 9.25 -39.97 -0.37 -1.74 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 42 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -33.35 375.63 -9.04 -42.39 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.23 Total: -0.63 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.98 Total: -6.50 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.69 Total: -33.10 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -1.17 Total: -24.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.35 -9.04 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815184557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.648 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds