Wall clock time and date at job start Tue Mar 31 2020 11:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37704 * 119.67448 * 2 1 4 4 C 1.39196 * 119.81245 * 180.02562 * 3 2 1 5 5 N 1.37477 * 133.16952 * 180.02562 * 4 3 2 6 6 H 0.96993 * 125.61035 * 359.97089 * 5 4 3 7 7 C 1.38200 * 108.77891 * 179.97438 * 5 4 3 8 8 C 1.46893 * 125.43488 * 179.97438 * 7 5 4 9 9 O 1.21567 * 120.00186 * 179.97438 * 8 7 5 10 10 O 1.34850 * 119.99884 * 359.97177 * 8 7 5 11 11 C 1.45202 * 116.99642 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46857 * 180.02562 * 11 10 8 13 13 O 1.42896 * 109.47283 * 65.00098 * 12 11 10 14 14 C 1.42899 * 114.00028 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47002 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00255 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99651 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47341 * 59.99648 * 19 17 15 21 21 H 1.48496 * 109.47199 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46863 * 300.00000 * 19 17 15 23 23 C 1.35947 * 109.12468 * 359.74548 * 7 5 4 24 24 C 1.40897 * 119.42664 * 359.97438 * 4 3 2 25 25 C 1.40085 * 119.66337 * 0.02562 * 24 4 3 26 26 C 1.50704 * 120.08369 * 179.97438 * 25 24 4 27 27 C 1.36465 * 119.82878 * 359.97438 * 25 24 4 28 28 H 1.09003 * 109.46986 * 269.97028 * 1 2 3 29 29 H 1.08992 * 109.47209 * 29.97904 * 1 2 3 30 30 H 1.08999 * 109.46808 * 149.97618 * 1 2 3 31 31 H 1.08004 * 120.09647 * 0.02778 * 3 2 1 32 32 H 1.08999 * 109.47399 * 300.00061 * 11 10 8 33 33 H 1.08996 * 109.47583 * 60.00286 * 11 10 8 34 34 H 1.09002 * 109.47170 * 185.00390 * 12 11 10 35 35 H 1.08999 * 109.47015 * 305.00186 * 12 11 10 36 36 H 1.08994 * 109.47320 * 299.99932 * 14 13 12 37 37 H 1.09005 * 109.47401 * 60.00001 * 14 13 12 38 38 H 0.96998 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.08004 * 126.13822 * 180.30299 * 23 7 5 40 40 H 1.08992 * 109.47442 * 90.00047 * 26 25 24 41 41 H 1.09004 * 109.46736 * 210.00017 * 26 25 24 42 42 H 1.08999 * 109.46792 * 329.99548 * 26 25 24 43 43 H 1.07998 * 119.68807 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.1964 0.0000 4 6 3.5807 1.1998 -0.0005 5 7 4.5188 2.2047 -0.0002 6 1 4.3278 3.1557 0.0001 7 6 5.7788 1.6371 -0.0005 8 6 7.0470 2.3784 -0.0009 9 8 8.1031 1.7764 -0.0006 10 8 7.0396 3.7269 -0.0015 11 6 8.3297 4.3931 -0.0012 12 6 8.1210 5.9088 -0.0014 13 8 7.4917 6.3032 1.2194 14 6 7.2496 7.7078 1.3213 15 6 6.5861 8.0088 2.6405 16 1 6.3713 7.2077 3.3321 17 6 6.2534 9.3071 2.9644 18 7 6.5155 10.2828 2.1224 19 14 5.4317 9.6804 4.5999 20 1 6.3196 9.2500 5.7097 21 1 5.1788 11.1399 4.7052 22 1 4.1428 8.9478 4.6848 23 6 5.6573 0.2830 0.0047 24 6 4.2759 -0.0257 -0.0005 25 6 3.5592 -1.2294 -0.0005 26 6 4.2931 -2.5456 -0.0011 27 6 2.1947 -1.2069 0.0000 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6450 2.1296 0.0005 32 1 8.8880 4.1037 0.8891 33 1 8.8888 4.1029 -0.8908 34 1 9.0856 6.4085 -0.0908 35 1 7.4877 6.1883 -0.8433 36 1 8.1959 8.2451 1.2591 37 1 6.5979 8.0242 0.5067 38 1 6.2811 11.1960 2.3501 39 1 6.4692 -0.4293 0.0104 40 1 4.4705 -2.8632 1.0263 41 1 3.6925 -3.2962 -0.5149 42 1 5.2471 -2.4293 -0.5153 43 1 1.6444 -2.1362 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815184557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:24 Heat of formation + Delta-G solvation = -110.898564 kcal Electronic energy + Delta-G solvation = -25034.159935 eV Core-core repulsion = 21236.598198 eV Total energy + Delta-G solvation = -3797.561737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.72848 -41.28798 -38.86553 -38.42680 -37.52564 -34.98709 -34.72058 -32.14994 -31.54431 -31.16813 -29.13428 -28.20218 -27.59704 -24.96118 -24.52631 -23.30764 -22.80075 -21.46764 -21.38771 -19.47972 -18.75940 -18.36028 -18.01986 -17.35355 -17.14462 -16.69948 -16.46931 -16.29767 -15.95088 -15.72398 -15.32036 -14.78706 -14.55848 -14.36429 -14.30606 -14.07548 -13.93053 -13.79590 -13.72584 -13.28717 -13.26832 -12.97855 -12.76933 -12.72957 -12.52529 -12.43011 -12.12411 -11.89192 -11.84648 -11.82614 -11.81831 -11.33810 -10.93369 -10.79507 -10.31811 -9.25996 -8.71175 -8.35773 -6.48199 -0.46948 0.59873 0.80902 1.35546 1.37652 1.41780 1.50416 1.91164 1.93871 2.31122 2.80282 2.98120 3.00765 3.49904 3.62947 3.85747 3.93025 3.98216 4.05510 4.21285 4.24842 4.35495 4.41459 4.44690 4.55570 4.64234 4.67469 4.73837 4.81240 4.87980 4.90116 4.91954 4.97982 5.12017 5.16222 5.17593 5.34222 5.45620 5.50140 5.53398 5.66241 5.71071 5.91122 6.10092 6.32295 6.44134 6.49626 6.75044 7.23393 8.76090 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.002711 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.241374 B =10325.534252 C =12033.043056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.042 4.042 3 C -0.162 4.162 4 C 0.115 3.885 5 N -0.568 5.568 6 H 0.430 0.570 7 C 0.005 3.995 8 C 0.533 3.467 9 O -0.517 6.517 10 O -0.357 6.357 11 C 0.079 3.921 12 C 0.053 3.947 13 O -0.410 6.410 14 C 0.209 3.791 15 C -0.552 4.552 16 H 0.059 0.941 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.981 3.019 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.266 1.266 23 C -0.087 4.087 24 C -0.150 4.150 25 C -0.026 4.026 26 C -0.116 4.116 27 C -0.155 4.155 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.057 0.943 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.272 0.728 39 H 0.169 0.831 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -24.813 -7.381 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.044 4.044 3 C -0.183 4.183 4 C 0.004 3.996 5 N -0.172 5.172 6 H 0.269 0.731 7 C -0.102 4.102 8 C 0.379 3.621 9 O -0.407 6.407 10 O -0.273 6.273 11 C 0.006 3.994 12 C -0.023 4.023 13 O -0.330 6.330 14 C 0.134 3.866 15 C -0.590 4.590 16 H 0.077 0.923 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.803 3.197 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.191 1.191 23 C -0.113 4.113 24 C -0.154 4.154 25 C -0.027 4.027 26 C -0.172 4.172 27 C -0.174 4.174 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.081 0.919 39 H 0.186 0.814 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.023 -24.692 -7.275 27.277 hybrid contribution 0.214 1.628 0.383 1.686 sum -8.809 -23.064 -6.892 25.633 Atomic orbital electron populations 1.20880 0.88646 1.04037 1.03400 1.20035 0.97447 0.91668 0.95217 1.20187 0.89162 0.99835 1.09129 1.18668 0.91615 0.87501 1.01809 1.42014 1.03464 1.09147 1.62598 0.73082 1.18997 0.82557 0.92517 1.16156 1.20158 0.88274 0.80964 0.72722 1.90853 1.32142 1.70085 1.47625 1.86642 1.37162 1.19951 1.83578 1.23310 0.81706 0.90044 1.04309 1.22665 0.98743 0.92539 0.88401 1.87864 1.80734 1.26419 1.37976 1.19864 0.93918 0.76558 0.96276 1.21342 1.40777 0.93752 1.03107 0.92318 1.25922 0.96022 0.95158 1.01892 1.70041 1.47857 1.00805 1.37980 0.85270 0.78939 0.77445 0.78000 1.19125 1.19772 1.19096 1.21080 0.96524 0.92099 1.01621 1.18209 0.92470 0.93412 1.11300 1.19526 0.93877 0.93721 0.95597 1.20868 1.00434 0.92566 1.03354 1.20774 0.92988 0.98552 1.05075 0.90019 0.90952 0.89591 0.84866 0.90576 0.86788 0.89621 0.92481 0.98928 0.99234 0.91926 0.81361 0.90041 0.89336 0.91314 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.99 71.24 0.71 -0.44 16 2 C -0.04 -0.69 5.88 -19.83 -0.12 -0.81 16 3 C -0.16 -3.34 9.71 22.37 0.22 -3.12 16 4 C 0.12 2.86 7.25 39.14 0.28 3.14 16 5 N -0.57 -15.11 6.19 -177.23 -1.10 -16.21 16 6 H 0.43 10.81 8.96 -92.71 -0.83 9.98 16 7 C 0.01 0.15 6.99 39.87 0.28 0.42 16 8 C 0.53 17.03 7.94 70.09 0.56 17.59 16 9 O -0.52 -17.63 16.63 19.62 0.33 -17.31 16 10 O -0.36 -12.05 10.20 -54.96 -0.56 -12.61 16 11 C 0.08 2.46 5.86 71.98 0.42 2.88 16 12 C 0.05 1.91 6.33 71.98 0.46 2.36 16 13 O -0.41 -20.02 10.30 -145.57 -1.50 -21.52 16 14 C 0.21 11.63 5.69 71.24 0.41 12.03 16 15 C -0.55 -32.99 9.43 25.60 0.24 -32.75 16 16 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 17 C 0.01 0.52 5.46 84.66 0.46 0.98 16 18 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 19 Si 0.98 44.31 29.54 68.60 2.03 46.34 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C -0.09 -2.18 10.12 22.56 0.23 -1.95 16 24 C -0.15 -3.55 5.98 -21.36 -0.13 -3.68 16 25 C -0.03 -0.48 5.88 -19.83 -0.12 -0.60 16 26 C -0.12 -1.42 9.92 71.24 0.71 -0.72 16 27 C -0.16 -2.40 9.25 22.02 0.20 -2.20 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 30 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 2.78 8.14 -2.39 -0.02 2.77 16 34 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.73 8.08 -2.38 -0.02 0.71 16 42 H 0.07 0.86 7.85 -2.39 -0.02 0.84 16 43 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -72.26 375.63 4.49 -67.77 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.19 Total: 15.42 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.81 Total: -6.85 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -0.81 Total: -71.25 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -1.73 Total: -51.44 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.26 4.49 -67.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815184557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.126 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds