Wall clock time and date at job start Tue Mar 31 2020 11:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36667 * 120.11886 * 2 1 4 4 C 1.38782 * 120.53143 * 180.02562 * 3 2 1 5 5 C 1.37790 * 120.66587 * 359.97438 * 4 3 2 6 6 C 1.39079 * 119.77702 * 359.97438 * 5 4 3 7 7 N 1.37696 * 133.51032 * 179.97438 * 6 5 4 8 8 H 0.96997 * 125.06648 * 0.04123 * 7 6 5 9 9 C 1.36837 * 109.87484 * 180.02562 * 7 6 5 10 10 C 1.34234 * 109.93567 * 359.97438 * 9 7 6 11 11 C 1.50700 * 126.49710 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47311 * 259.03029 * 11 10 9 13 13 O 1.20835 * 119.99641 * 359.97438 * 12 11 10 14 14 O 1.34224 * 120.00327 * 179.72885 * 12 11 10 15 15 C 1.45198 * 117.00235 * 180.27789 * 14 12 11 16 16 C 1.53000 * 109.47263 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.47018 * 64.99475 * 16 15 14 18 18 C 1.42901 * 113.99659 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46971 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99777 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99775 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46638 * 90.00453 * 23 21 19 25 25 H 1.48495 * 109.47137 * 210.00417 * 23 21 19 26 26 H 1.48499 * 109.47222 * 330.00649 * 23 21 19 27 27 C 1.39595 * 120.11841 * 180.25599 * 2 1 3 28 28 H 1.08997 * 109.47508 * 95.80828 * 1 2 3 29 29 H 1.09000 * 109.47067 * 215.80947 * 1 2 3 30 30 H 1.09004 * 109.47399 * 335.80553 * 1 2 3 31 31 H 1.07998 * 119.73077 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.66782 * 180.02562 * 4 3 2 33 33 H 1.08006 * 120.11199 * 180.02562 * 5 4 3 34 34 H 1.07996 * 125.02870 * 179.97438 * 9 7 6 35 35 H 1.09006 * 109.46812 * 139.03335 * 11 10 9 36 36 H 1.08994 * 109.47231 * 19.03150 * 11 10 9 37 37 H 1.09007 * 109.46821 * 299.99712 * 15 14 12 38 38 H 1.08997 * 109.47068 * 59.99315 * 15 14 12 39 39 H 1.08997 * 109.47146 * 184.99544 * 16 15 14 40 40 H 1.08999 * 109.46912 * 304.99994 * 16 15 14 41 41 H 1.08995 * 109.47579 * 300.00478 * 18 17 16 42 42 H 1.09004 * 109.46735 * 60.00741 * 18 17 16 43 43 H 0.97005 * 119.99550 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5805 1.1921 -0.0005 5 6 4.2918 0.0120 -0.0005 6 6 3.6145 -1.2027 0.0005 7 7 4.0250 -2.5170 0.0004 8 1 4.9489 -2.8123 -0.0001 9 6 2.9353 -3.3447 0.0012 10 6 1.8075 -2.6167 0.0026 11 6 0.3974 -3.1484 0.0033 12 6 -0.1691 -3.0717 -1.3911 13 8 0.5032 -2.6302 -2.2929 14 8 -1.4186 -3.4985 -1.6323 15 6 -1.8963 -3.4004 -2.9999 16 6 -3.3292 -3.9310 -3.0790 17 8 -4.1926 -3.0864 -2.3154 18 6 -5.5618 -3.4956 -2.3235 19 6 -6.3767 -2.5394 -1.4911 20 1 -5.8972 -1.7028 -1.0049 21 6 -7.7348 -2.7322 -1.3512 22 7 -8.3188 -3.7508 -1.9436 23 14 -8.7450 -1.5466 -0.3200 24 1 -9.2417 -0.4424 -1.1797 25 1 -9.8986 -2.2676 0.2754 26 1 -7.8978 -0.9875 0.7638 27 6 2.2074 -1.2075 -0.0054 28 1 -0.3634 -0.1040 -1.0223 29 1 -0.3633 -0.8334 0.6013 30 1 -0.3634 0.9374 0.4212 31 1 1.6503 2.1160 -0.0004 32 1 4.1083 2.1344 -0.0001 33 1 5.3717 0.0302 -0.0005 34 1 2.9766 -4.4239 0.0009 35 1 -0.2158 -2.5508 0.6779 36 1 0.4004 -4.1857 0.3377 37 1 -1.8764 -2.3579 -3.3178 38 1 -1.2538 -3.9915 -3.6525 39 1 -3.6563 -3.9402 -4.1187 40 1 -3.3641 -4.9439 -2.6780 41 1 -5.9350 -3.4955 -3.3476 42 1 -5.6434 -4.4996 -1.9071 43 1 -9.2742 -3.8866 -1.8449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815206806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:53 Heat of formation + Delta-G solvation = -83.793952 kcal Electronic energy + Delta-G solvation = -25549.835077 eV Core-core repulsion = 21753.448684 eV Total energy + Delta-G solvation = -3796.386393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54820 -40.05766 -37.32721 -37.01476 -35.92808 -33.87347 -32.75523 -31.60522 -30.11664 -29.43601 -28.23498 -26.89463 -26.13212 -22.71455 -22.28980 -22.19298 -22.03819 -21.11772 -19.20262 -17.62315 -17.52292 -16.75032 -16.52868 -16.28811 -15.90459 -15.53042 -15.34463 -14.64324 -14.63218 -14.56249 -14.25232 -13.53155 -13.49908 -13.42703 -13.22437 -12.98155 -12.66990 -12.50713 -12.16045 -12.13138 -11.87036 -11.46245 -11.39446 -11.26834 -10.89377 -10.84773 -10.82504 -10.72345 -10.30644 -10.25717 -10.02532 -9.56827 -9.11352 -8.85676 -8.34189 -8.19555 -7.72221 -6.10757 -4.12250 0.99016 1.52878 2.31273 2.44037 2.90591 3.13731 3.31365 3.36304 3.41911 3.79067 4.34055 4.53142 4.58356 4.71677 4.76335 4.88589 4.96502 5.04373 5.13742 5.25928 5.28795 5.29378 5.34643 5.42203 5.51188 5.55194 5.67147 5.75255 5.80889 5.90816 5.95280 5.98782 6.13624 6.16350 6.36227 6.50678 6.54847 6.67153 6.74373 7.04368 7.07292 7.32635 7.41478 7.79576 8.02095 8.14185 8.54509 9.00558 9.52498 11.00833 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.002591 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.519467 B =10803.758245 C =11782.057071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.028 4.028 3 C -0.152 4.152 4 C -0.095 4.095 5 C -0.141 4.141 6 C 0.098 3.902 7 N -0.595 5.595 8 H 0.415 0.585 9 C 0.064 3.936 10 C -0.157 4.157 11 C -0.042 4.042 12 C 0.458 3.542 13 O -0.505 6.505 14 O -0.344 6.344 15 C 0.075 3.925 16 C 0.062 3.938 17 O -0.390 6.390 18 C 0.194 3.806 19 C -0.514 4.514 20 H 0.067 0.933 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.271 1.271 27 C -0.087 4.087 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.006 0.994 42 H 0.007 0.993 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.245 2.080 4.584 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.028 4.028 3 C -0.171 4.171 4 C -0.114 4.114 5 C -0.162 4.162 6 C -0.008 4.008 7 N -0.197 5.197 8 H 0.252 0.748 9 C -0.062 4.062 10 C -0.164 4.164 11 C -0.080 4.080 12 C 0.300 3.700 13 O -0.393 6.393 14 O -0.260 6.260 15 C 0.002 3.998 16 C -0.016 4.016 17 O -0.310 6.310 18 C 0.120 3.880 19 C -0.552 4.552 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.196 1.196 27 C -0.092 4.092 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.188 0.812 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 26.406 2.212 4.363 26.855 hybrid contribution -0.224 0.090 0.032 0.244 sum 26.182 2.302 4.395 26.647 Atomic orbital electron populations 1.20936 0.91019 1.02988 1.02887 1.19136 0.95808 0.91179 0.96699 1.20538 0.94069 0.97310 1.05167 1.20756 0.94025 0.96897 0.99692 1.19941 0.98916 0.89573 1.07731 1.18193 0.93562 0.85004 1.04070 1.41643 1.08370 1.04109 1.65593 0.74806 1.21530 0.85273 0.95944 1.03501 1.19518 0.92899 0.91390 1.12633 1.19678 0.92280 1.04203 0.91868 1.23662 0.79953 0.74437 0.91946 1.90655 1.60074 1.41937 1.46661 1.86596 1.30443 1.75863 1.33082 1.23161 0.94244 1.02662 0.79775 1.22318 0.88153 0.94887 0.96223 1.87917 1.20841 1.51454 1.70778 1.20233 0.75655 0.95777 0.96336 1.21052 0.92080 1.11632 1.30441 0.91479 1.24951 0.97507 0.95927 0.96144 1.69964 1.11006 1.29097 1.43778 0.86330 0.79377 0.80497 0.80268 1.20479 1.21086 1.19550 1.18786 0.91723 0.92529 1.06117 0.90838 0.91165 0.91274 0.86033 0.85889 0.86516 0.81207 0.86643 0.87091 0.90650 0.90660 0.92103 0.93246 0.97665 0.97505 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.43 36.00 0.34 -1.18 16 2 C -0.03 -0.36 5.87 -104.69 -0.61 -0.97 16 3 C -0.15 -1.71 9.60 -39.95 -0.38 -2.09 16 4 C -0.09 -0.94 10.01 -39.54 -0.40 -1.33 16 5 C -0.14 -1.40 10.08 -39.43 -0.40 -1.80 16 6 C 0.10 1.11 7.28 -83.99 -0.61 0.50 16 7 N -0.59 -5.15 6.07 -10.65 -0.06 -5.21 16 8 H 0.42 2.16 8.96 -40.82 -0.37 1.79 16 9 C 0.06 0.58 11.73 -16.73 -0.20 0.39 16 10 C -0.16 -1.83 4.81 -102.71 -0.49 -2.33 16 11 C -0.04 -0.48 5.57 -29.03 -0.16 -0.64 16 12 C 0.46 6.83 7.83 36.01 0.28 7.11 16 13 O -0.51 -8.72 15.78 -18.76 -0.30 -9.02 16 14 O -0.34 -5.74 10.19 -42.01 -0.43 -6.17 16 15 C 0.08 1.22 5.84 37.16 0.22 1.44 16 16 C 0.06 1.14 6.33 37.16 0.24 1.38 16 17 O -0.39 -9.48 10.30 -38.80 -0.40 -9.88 16 18 C 0.19 5.32 5.69 36.01 0.20 5.52 16 19 C -0.51 -15.15 9.43 -34.44 -0.32 -15.48 16 20 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 23 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.09 -1.14 6.15 -105.14 -0.65 -1.78 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.84 5.51 -51.93 -0.29 0.55 16 30 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 31 H 0.12 1.15 8.05 -52.49 -0.42 0.73 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.24 5.93 -51.93 -0.31 0.93 16 36 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -35.83 369.50 -8.94 -44.78 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.99 Total: -1.01 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.04 Total: -9.76 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.67 Total: -31.32 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.12 Total: -25.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.83 -8.94 -44.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815206806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.018 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds