Wall clock time and date at job start Tue Mar 31 2020 11:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36667 * 120.11886 * 2 1 4 4 C 1.38782 * 120.53143 * 180.02562 * 3 2 1 5 5 C 1.37790 * 120.66587 * 359.97438 * 4 3 2 6 6 C 1.39079 * 119.77702 * 359.97438 * 5 4 3 7 7 N 1.37696 * 133.51032 * 179.97438 * 6 5 4 8 8 H 0.96997 * 125.06648 * 0.04123 * 7 6 5 9 9 C 1.36837 * 109.87484 * 180.02562 * 7 6 5 10 10 C 1.34234 * 109.93567 * 359.97438 * 9 7 6 11 11 C 1.50700 * 126.49710 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47311 * 259.03029 * 11 10 9 13 13 O 1.20835 * 119.99641 * 359.97438 * 12 11 10 14 14 O 1.34224 * 120.00327 * 179.72885 * 12 11 10 15 15 C 1.45198 * 117.00235 * 180.27789 * 14 12 11 16 16 C 1.53000 * 109.47263 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.47018 * 64.99475 * 16 15 14 18 18 C 1.42901 * 113.99659 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46971 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99777 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99775 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46638 * 90.00453 * 23 21 19 25 25 H 1.48495 * 109.47137 * 210.00417 * 23 21 19 26 26 H 1.48499 * 109.47222 * 330.00649 * 23 21 19 27 27 C 1.39595 * 120.11841 * 180.25599 * 2 1 3 28 28 H 1.08997 * 109.47508 * 95.80828 * 1 2 3 29 29 H 1.09000 * 109.47067 * 215.80947 * 1 2 3 30 30 H 1.09004 * 109.47399 * 335.80553 * 1 2 3 31 31 H 1.07998 * 119.73077 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.66782 * 180.02562 * 4 3 2 33 33 H 1.08006 * 120.11199 * 180.02562 * 5 4 3 34 34 H 1.07996 * 125.02870 * 179.97438 * 9 7 6 35 35 H 1.09006 * 109.46812 * 139.03335 * 11 10 9 36 36 H 1.08994 * 109.47231 * 19.03150 * 11 10 9 37 37 H 1.09007 * 109.46821 * 299.99712 * 15 14 12 38 38 H 1.08997 * 109.47068 * 59.99315 * 15 14 12 39 39 H 1.08997 * 109.47146 * 184.99544 * 16 15 14 40 40 H 1.08999 * 109.46912 * 304.99994 * 16 15 14 41 41 H 1.08995 * 109.47579 * 300.00478 * 18 17 16 42 42 H 1.09004 * 109.46735 * 60.00741 * 18 17 16 43 43 H 0.97005 * 119.99550 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5805 1.1921 -0.0005 5 6 4.2918 0.0120 -0.0005 6 6 3.6145 -1.2027 0.0005 7 7 4.0250 -2.5170 0.0004 8 1 4.9489 -2.8123 -0.0001 9 6 2.9353 -3.3447 0.0012 10 6 1.8075 -2.6167 0.0026 11 6 0.3974 -3.1484 0.0033 12 6 -0.1691 -3.0717 -1.3911 13 8 0.5032 -2.6302 -2.2929 14 8 -1.4186 -3.4985 -1.6323 15 6 -1.8963 -3.4004 -2.9999 16 6 -3.3292 -3.9310 -3.0790 17 8 -4.1926 -3.0864 -2.3154 18 6 -5.5618 -3.4956 -2.3235 19 6 -6.3767 -2.5394 -1.4911 20 1 -5.8972 -1.7028 -1.0049 21 6 -7.7348 -2.7322 -1.3512 22 7 -8.3188 -3.7508 -1.9436 23 14 -8.7450 -1.5466 -0.3200 24 1 -9.2417 -0.4424 -1.1797 25 1 -9.8986 -2.2676 0.2754 26 1 -7.8978 -0.9875 0.7638 27 6 2.2074 -1.2075 -0.0054 28 1 -0.3634 -0.1040 -1.0223 29 1 -0.3633 -0.8334 0.6013 30 1 -0.3634 0.9374 0.4212 31 1 1.6503 2.1160 -0.0004 32 1 4.1083 2.1344 -0.0001 33 1 5.3717 0.0302 -0.0005 34 1 2.9766 -4.4239 0.0009 35 1 -0.2158 -2.5508 0.6779 36 1 0.4004 -4.1857 0.3377 37 1 -1.8764 -2.3579 -3.3178 38 1 -1.2538 -3.9915 -3.6525 39 1 -3.6563 -3.9402 -4.1187 40 1 -3.3641 -4.9439 -2.6780 41 1 -5.9350 -3.4955 -3.3476 42 1 -5.6434 -4.4996 -1.9071 43 1 -9.2742 -3.8866 -1.8449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815206806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:52 Heat of formation + Delta-G solvation = -105.239690 kcal Electronic energy + Delta-G solvation = -25550.765034 eV Core-core repulsion = 21753.448684 eV Total energy + Delta-G solvation = -3797.316350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33171 -41.25510 -38.73550 -38.08423 -37.35130 -34.93714 -34.72241 -32.52043 -31.57885 -30.23586 -29.31198 -28.80142 -27.02270 -24.58089 -23.89748 -23.02085 -22.82784 -22.32467 -20.04998 -18.75213 -18.66886 -18.34630 -17.95860 -17.41455 -17.16004 -16.94014 -16.40550 -16.23770 -16.17335 -15.50409 -15.40389 -15.05527 -14.54704 -14.32117 -14.22890 -14.11980 -13.94678 -13.61934 -13.55761 -13.17703 -13.05141 -12.99207 -12.87158 -12.68629 -12.42061 -12.26784 -12.10218 -11.98062 -11.68229 -11.62913 -11.46470 -11.26732 -10.88461 -10.40050 -10.25683 -9.12819 -8.50184 -8.31383 -6.43317 0.19943 0.70982 1.28292 1.41450 1.42970 1.44020 1.56278 2.08165 2.28531 2.35637 2.95281 3.02630 3.08027 3.73775 3.80982 3.91704 3.95738 4.03972 4.10106 4.12044 4.23793 4.38747 4.43411 4.47464 4.53289 4.57262 4.60137 4.71575 4.73493 4.80125 4.86679 4.89997 5.00159 5.13722 5.18806 5.26552 5.51209 5.55718 5.58291 5.73197 5.75954 5.85197 5.96262 6.26123 6.51174 6.74698 6.79991 6.84834 7.28225 8.80852 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.002591 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.519467 B =10803.758245 C =11782.057071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.061 4.061 3 C -0.160 4.160 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.079 3.921 7 N -0.582 5.582 8 H 0.433 0.567 9 C 0.084 3.916 10 C -0.196 4.196 11 C -0.036 4.036 12 C 0.459 3.541 13 O -0.532 6.532 14 O -0.360 6.360 15 C 0.079 3.921 16 C 0.054 3.946 17 O -0.408 6.408 18 C 0.208 3.792 19 C -0.549 4.549 20 H 0.060 0.940 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.982 3.018 24 H -0.268 1.268 25 H -0.273 1.273 26 H -0.264 1.264 27 C -0.116 4.116 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.209 0.791 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.058 0.942 41 H -0.009 1.009 42 H -0.009 1.009 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.812 2.024 5.545 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.061 4.061 3 C -0.179 4.179 4 C -0.123 4.123 5 C -0.159 4.159 6 C -0.029 4.029 7 N -0.186 5.186 8 H 0.273 0.727 9 C -0.044 4.044 10 C -0.203 4.203 11 C -0.073 4.073 12 C 0.303 3.697 13 O -0.421 6.421 14 O -0.277 6.277 15 C 0.006 3.994 16 C -0.022 4.022 17 O -0.328 6.328 18 C 0.133 3.867 19 C -0.587 4.587 20 H 0.078 0.922 21 C -0.191 4.191 22 N -0.569 5.569 23 Si 0.805 3.195 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.189 1.189 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.226 0.774 35 H 0.133 0.867 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 28.017 2.148 5.318 28.598 hybrid contribution -0.582 0.061 -0.316 0.665 sum 27.435 2.209 5.002 27.975 Atomic orbital electron populations 1.20854 0.91680 1.03487 1.01249 1.19299 0.95732 0.92195 0.98894 1.20811 0.95111 0.97283 1.04685 1.21108 0.93577 0.98282 0.99303 1.20332 1.00394 0.89058 1.06119 1.18463 0.93261 0.86427 1.04699 1.41685 1.09349 1.03190 1.64396 0.72742 1.22123 0.84473 0.97494 1.00274 1.19670 0.93671 0.91349 1.15594 1.19770 0.92174 1.06169 0.89199 1.24434 0.78920 0.73178 0.93157 1.90631 1.60505 1.43132 1.47875 1.86599 1.31677 1.76261 1.33143 1.23098 0.93307 1.02462 0.80547 1.22634 0.88357 0.94658 0.96579 1.87867 1.19866 1.52997 1.72118 1.19872 0.77300 0.94568 0.94960 1.21384 0.93299 1.12285 1.31709 0.92163 1.25938 0.98443 0.97694 0.97050 1.70060 1.11747 1.30527 1.44534 0.85202 0.77627 0.78158 0.78562 1.19369 1.19806 1.18866 1.19174 0.92992 0.93258 1.06623 0.93411 0.91313 0.90245 0.85032 0.83204 0.83717 0.77394 0.86716 0.83811 0.91729 0.87668 0.90315 0.92343 0.99134 0.99167 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.43 71.23 0.67 -2.41 16 2 C -0.06 -1.61 5.87 -19.91 -0.12 -1.73 16 3 C -0.16 -3.61 9.60 22.03 0.21 -3.40 16 4 C -0.10 -1.93 10.01 22.29 0.22 -1.70 16 5 C -0.14 -2.51 10.08 22.37 0.23 -2.29 16 6 C 0.08 1.68 7.28 39.03 0.28 1.96 16 7 N -0.58 -8.69 6.07 -187.61 -1.14 -9.82 16 8 H 0.43 3.19 8.96 -92.71 -0.83 2.36 16 9 C 0.08 1.32 11.73 83.00 0.97 2.29 16 10 C -0.20 -4.39 4.81 -18.63 -0.09 -4.48 16 11 C -0.04 -0.78 5.57 29.10 0.16 -0.62 16 12 C 0.46 13.72 7.83 71.24 0.56 14.27 16 13 O -0.53 -18.55 15.78 21.94 0.35 -18.21 16 14 O -0.36 -12.08 10.19 -48.72 -0.50 -12.58 16 15 C 0.08 2.58 5.84 71.98 0.42 3.00 16 16 C 0.05 2.02 6.33 71.98 0.46 2.47 16 17 O -0.41 -20.35 10.30 -145.56 -1.50 -21.85 16 18 C 0.21 11.73 5.69 71.24 0.41 12.14 16 19 C -0.55 -33.03 9.43 25.60 0.24 -32.79 16 20 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 21 C 0.01 0.42 5.46 84.66 0.46 0.89 16 22 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 23 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.12 -3.01 6.15 -20.20 -0.12 -3.14 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.76 5.51 -2.39 -0.01 1.75 16 30 H 0.08 1.82 8.04 -2.38 -0.02 1.80 16 31 H 0.13 2.51 8.05 -2.91 -0.02 2.48 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.12 2.50 5.93 -2.38 -0.01 2.49 16 36 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.22 8.13 -2.38 -0.02 2.20 16 38 H 0.11 2.78 8.13 -2.39 -0.02 2.76 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 43 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -78.94 369.50 4.69 -74.25 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.20 Total: 12.69 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.96 Total: -15.53 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.85 Total: -65.33 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.65 Total: -52.64 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -78.94 4.69 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815206806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.991 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds