Wall clock time and date at job start Tue Mar 31 2020 11:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38953 * 119.69132 * 2 1 4 4 C 1.37666 * 120.65358 * 179.97438 * 3 2 1 5 5 C 1.39227 * 119.81500 * 0.02562 * 4 3 2 6 6 N 1.37465 * 133.17405 * 179.97438 * 5 4 3 7 7 H 0.97003 * 125.60582 * 359.97438 * 6 5 4 8 8 C 1.38193 * 108.78660 * 180.02562 * 6 5 4 9 9 C 1.46893 * 125.44068 * 180.02562 * 8 6 5 10 10 O 1.21570 * 119.99672 * 179.97438 * 9 8 6 11 11 O 1.34837 * 120.00211 * 359.96977 * 9 8 6 12 12 C 1.45208 * 117.00072 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46863 * 180.02562 * 12 11 9 14 14 O 1.42896 * 109.47295 * 65.00187 * 13 12 11 15 15 C 1.42898 * 113.99911 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47281 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99660 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99796 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00469 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.46893 * 90.00209 * 20 18 16 22 22 H 1.48503 * 109.46930 * 210.00369 * 20 18 16 23 23 H 1.48501 * 109.46926 * 329.99951 * 20 18 16 24 24 C 1.35948 * 109.11640 * 359.97438 * 8 6 5 25 25 C 1.40872 * 119.42465 * 359.70991 * 5 4 3 26 26 C 1.36429 * 119.69734 * 179.97438 * 2 1 3 27 27 C 1.50706 * 120.08151 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47448 * 270.01816 * 1 2 3 29 29 H 1.08998 * 109.47429 * 30.02135 * 1 2 3 30 30 H 1.09008 * 109.47246 * 150.01804 * 1 2 3 31 31 H 1.07999 * 119.67493 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.09342 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.46952 * 299.99635 * 12 11 9 34 34 H 1.08994 * 109.47209 * 59.99929 * 12 11 9 35 35 H 1.09001 * 109.46560 * 184.99990 * 13 12 11 36 36 H 1.09000 * 109.47006 * 304.99203 * 13 12 11 37 37 H 1.08994 * 109.47130 * 299.99960 * 15 14 13 38 38 H 1.09006 * 109.46963 * 59.99511 * 15 14 13 39 39 H 0.96997 * 120.00217 * 180.02562 * 19 18 16 40 40 H 1.08003 * 126.14313 * 180.02562 * 24 8 6 41 41 H 1.09001 * 109.46953 * 90.00161 * 27 26 2 42 42 H 1.09000 * 109.47318 * 209.99758 * 27 26 2 43 43 H 1.09000 * 109.47161 * 330.00389 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2071 0.0000 4 6 3.5716 1.2302 0.0005 5 6 4.2841 0.0340 0.0005 6 7 5.6267 -0.2611 0.0005 7 1 6.3476 0.3880 0.0002 8 6 5.7805 -1.6344 -0.0001 9 6 7.0646 -2.3477 0.0003 10 8 7.0847 -3.5632 0.0002 11 8 8.2210 -1.6543 0.0006 12 6 9.4517 -2.4249 0.0004 13 6 10.6495 -1.4729 0.0015 14 8 10.6678 -0.7318 1.2231 15 6 11.7536 0.1914 1.3266 16 6 11.6743 0.9144 2.6465 17 1 10.8748 0.6909 3.3373 18 6 12.6229 1.8604 2.9724 19 7 13.5966 2.1323 2.1313 20 14 12.5249 2.7561 4.6088 21 1 13.2874 1.9991 5.6338 22 1 13.1046 4.1157 4.4644 23 1 11.1047 2.8656 5.0288 24 6 4.5535 -2.2198 0.0002 25 6 3.5840 -1.1884 0.0062 26 6 2.1828 -1.1851 0.0005 27 6 1.4242 -2.4873 0.0017 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6449 2.1364 0.0004 32 1 4.0974 2.1736 0.0009 33 1 9.4870 -3.0535 0.8901 34 1 9.4870 -3.0529 -0.8898 35 1 11.5709 -2.0483 -0.0883 36 1 10.5675 -0.7848 -0.8399 37 1 12.6977 -0.3497 1.2645 38 1 11.6949 0.9141 0.5126 39 1 14.2642 2.7975 2.3608 40 1 4.3541 -3.2813 0.0002 41 1 1.2410 -2.8020 -1.0257 42 1 2.0106 -3.2489 0.5158 43 1 0.4725 -2.3530 0.5157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815210710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:57 Heat of formation + Delta-G solvation = -89.961823 kcal Electronic energy + Delta-G solvation = -25060.768649 eV Core-core repulsion = 21264.114797 eV Total energy + Delta-G solvation = -3796.653852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82117 -40.11415 -37.89534 -37.09617 -36.10924 -33.50892 -32.83128 -31.77140 -30.39652 -29.97313 -27.81230 -26.95309 -26.06156 -24.41501 -22.51210 -22.13101 -21.26363 -21.10811 -20.23816 -18.45684 -17.38373 -16.67155 -16.63245 -16.32340 -15.50588 -15.43271 -15.28851 -14.92972 -14.67522 -14.39337 -14.17676 -13.84046 -13.60506 -13.59043 -13.14081 -13.00404 -12.92611 -12.72243 -12.67561 -12.22815 -12.03221 -11.60532 -11.51545 -11.21243 -11.04441 -11.02245 -10.91851 -10.85854 -10.65842 -10.48710 -10.10697 -9.95382 -9.19034 -8.94309 -8.36797 -8.27864 -7.87714 -6.17097 -4.19156 0.47102 1.37213 1.78890 2.48549 2.88168 3.00867 3.26535 3.31687 3.36929 3.58733 4.27194 4.40114 4.57335 4.64492 4.67721 4.81989 4.92495 5.03235 5.04646 5.13380 5.19530 5.27787 5.35564 5.37862 5.41066 5.45639 5.47377 5.59436 5.66254 5.77892 5.81828 5.86081 5.91568 5.97592 6.17909 6.36669 6.38915 6.43131 6.49647 6.87373 6.98543 7.24003 7.33052 7.66983 7.72659 8.06445 8.45369 8.93211 9.45906 10.94350 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.002581 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.068003 B =10847.311609 C =12325.441460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.122 4.122 3 C -0.080 4.080 4 C -0.133 4.133 5 C 0.118 3.882 6 N -0.563 5.563 7 H 0.430 0.570 8 C 0.038 3.962 9 C 0.530 3.470 10 O -0.498 6.498 11 O -0.342 6.342 12 C 0.077 3.923 13 C 0.061 3.939 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.516 4.516 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.101 4.101 25 C -0.118 4.118 26 C -0.027 4.027 27 C -0.118 4.118 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.157 0.843 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 -5.926 -7.902 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.124 4.124 3 C -0.100 4.100 4 C -0.153 4.153 5 C 0.007 3.993 6 N -0.166 5.166 7 H 0.270 0.730 8 C -0.071 4.071 9 C 0.374 3.626 10 O -0.386 6.386 11 O -0.258 6.258 12 C 0.003 3.997 13 C -0.017 4.017 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.554 4.554 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.028 4.028 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.175 0.825 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.960 -6.140 -7.774 25.928 hybrid contribution 1.008 0.872 0.588 1.457 sum -22.952 -5.268 -7.186 24.621 Atomic orbital electron populations 1.20749 0.91179 1.02583 1.02080 1.19214 0.95983 0.92271 1.04887 1.20755 0.92803 0.97586 0.98822 1.20094 0.93814 0.95079 1.06323 1.18342 0.82887 0.95573 1.02534 1.42031 1.06489 1.06126 1.61945 0.73001 1.19077 0.92108 0.82775 1.13095 1.19951 0.83598 0.85666 0.73413 1.90884 1.87736 1.13702 1.46315 1.86651 1.14665 1.41203 1.83304 1.23296 0.79690 0.93762 1.02923 1.22338 0.94296 0.94541 0.90506 1.87919 1.52519 1.55914 1.34780 1.20245 0.83674 0.86503 0.97547 1.21035 1.11678 1.20713 1.01998 0.91547 1.24949 0.94949 0.96704 0.97871 1.69953 1.14218 1.33614 1.35930 0.86327 0.78496 0.78700 0.82935 1.20396 1.21018 1.19614 1.20832 0.88738 0.99414 1.03724 1.17930 0.92955 0.92125 1.09274 1.18968 0.90771 0.95227 0.97821 1.20833 0.99865 0.94286 1.02449 0.91492 0.91790 0.91504 0.85477 0.85622 0.90123 0.90058 0.91663 0.93185 0.97536 0.97519 0.92579 0.82529 0.90914 0.91272 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.15 36.00 0.33 -0.35 16 2 C -0.12 -1.11 5.84 -105.01 -0.61 -1.72 16 3 C -0.08 -0.72 9.66 -39.53 -0.38 -1.10 16 4 C -0.13 -1.36 10.08 -39.42 -0.40 -1.76 16 5 C 0.12 1.44 7.25 -83.98 -0.61 0.83 16 6 N -0.56 -7.13 6.19 -7.37 -0.05 -7.18 16 7 H 0.43 5.01 8.96 -40.82 -0.37 4.65 16 8 C 0.04 0.52 6.99 -82.32 -0.58 -0.05 16 9 C 0.53 8.23 7.94 34.23 0.27 8.50 16 10 O -0.50 -8.37 16.63 -19.32 -0.32 -8.69 16 11 O -0.34 -5.63 10.20 -43.65 -0.45 -6.07 16 12 C 0.08 1.19 5.86 37.16 0.22 1.40 16 13 C 0.06 1.08 6.33 37.16 0.24 1.32 16 14 O -0.39 -9.31 10.30 -38.79 -0.40 -9.71 16 15 C 0.19 5.25 5.69 36.01 0.20 5.45 16 16 C -0.52 -15.10 9.43 -34.44 -0.32 -15.42 16 17 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.10 -1.26 10.12 -39.14 -0.40 -1.65 16 25 C -0.12 -1.43 5.98 -106.93 -0.64 -2.07 16 26 C -0.03 -0.27 5.88 -104.56 -0.62 -0.89 16 27 C -0.12 -0.87 9.07 36.01 0.33 -0.55 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.07 0.36 6.64 -51.92 -0.34 0.02 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 43 H 0.07 0.42 6.65 -51.93 -0.35 0.08 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.39 371.79 -9.04 -42.43 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.08 Total: -0.69 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.06 Total: -6.53 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.69 Total: -33.03 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.17 Total: -24.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.39 -9.04 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815210710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.533 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds