Wall clock time and date at job start Tue Mar 31 2020 11:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38953 * 119.69132 * 2 1 4 4 C 1.37666 * 120.65358 * 179.97438 * 3 2 1 5 5 C 1.39227 * 119.81500 * 0.02562 * 4 3 2 6 6 N 1.37465 * 133.17405 * 179.97438 * 5 4 3 7 7 H 0.97003 * 125.60582 * 359.97438 * 6 5 4 8 8 C 1.38193 * 108.78660 * 180.02562 * 6 5 4 9 9 C 1.46893 * 125.44068 * 180.02562 * 8 6 5 10 10 O 1.21570 * 119.99672 * 179.97438 * 9 8 6 11 11 O 1.34837 * 120.00211 * 359.96977 * 9 8 6 12 12 C 1.45208 * 117.00072 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46863 * 180.02562 * 12 11 9 14 14 O 1.42896 * 109.47295 * 65.00187 * 13 12 11 15 15 C 1.42898 * 113.99911 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47281 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99660 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99796 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00469 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.46893 * 90.00209 * 20 18 16 22 22 H 1.48503 * 109.46930 * 210.00369 * 20 18 16 23 23 H 1.48501 * 109.46926 * 329.99951 * 20 18 16 24 24 C 1.35948 * 109.11640 * 359.97438 * 8 6 5 25 25 C 1.40872 * 119.42465 * 359.70991 * 5 4 3 26 26 C 1.36429 * 119.69734 * 179.97438 * 2 1 3 27 27 C 1.50706 * 120.08151 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47448 * 270.01816 * 1 2 3 29 29 H 1.08998 * 109.47429 * 30.02135 * 1 2 3 30 30 H 1.09008 * 109.47246 * 150.01804 * 1 2 3 31 31 H 1.07999 * 119.67493 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.09342 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.46952 * 299.99635 * 12 11 9 34 34 H 1.08994 * 109.47209 * 59.99929 * 12 11 9 35 35 H 1.09001 * 109.46560 * 184.99990 * 13 12 11 36 36 H 1.09000 * 109.47006 * 304.99203 * 13 12 11 37 37 H 1.08994 * 109.47130 * 299.99960 * 15 14 13 38 38 H 1.09006 * 109.46963 * 59.99511 * 15 14 13 39 39 H 0.96997 * 120.00217 * 180.02562 * 19 18 16 40 40 H 1.08003 * 126.14313 * 180.02562 * 24 8 6 41 41 H 1.09001 * 109.46953 * 90.00161 * 27 26 2 42 42 H 1.09000 * 109.47318 * 209.99758 * 27 26 2 43 43 H 1.09000 * 109.47161 * 330.00389 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2071 0.0000 4 6 3.5716 1.2302 0.0005 5 6 4.2841 0.0340 0.0005 6 7 5.6267 -0.2611 0.0005 7 1 6.3476 0.3880 0.0002 8 6 5.7805 -1.6344 -0.0001 9 6 7.0646 -2.3477 0.0003 10 8 7.0847 -3.5632 0.0002 11 8 8.2210 -1.6543 0.0006 12 6 9.4517 -2.4249 0.0004 13 6 10.6495 -1.4729 0.0015 14 8 10.6678 -0.7318 1.2231 15 6 11.7536 0.1914 1.3266 16 6 11.6743 0.9144 2.6465 17 1 10.8748 0.6909 3.3373 18 6 12.6229 1.8604 2.9724 19 7 13.5966 2.1323 2.1313 20 14 12.5249 2.7561 4.6088 21 1 13.2874 1.9991 5.6338 22 1 13.1046 4.1157 4.4644 23 1 11.1047 2.8656 5.0288 24 6 4.5535 -2.2198 0.0002 25 6 3.5840 -1.1884 0.0062 26 6 2.1828 -1.1851 0.0005 27 6 1.4242 -2.4873 0.0017 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6449 2.1364 0.0004 32 1 4.0974 2.1736 0.0009 33 1 9.4870 -3.0535 0.8901 34 1 9.4870 -3.0529 -0.8898 35 1 11.5709 -2.0483 -0.0883 36 1 10.5675 -0.7848 -0.8399 37 1 12.6977 -0.3497 1.2645 38 1 11.6949 0.9141 0.5126 39 1 14.2642 2.7975 2.3608 40 1 4.3541 -3.2813 0.0002 41 1 1.2410 -2.8020 -1.0257 42 1 2.0106 -3.2489 0.5158 43 1 0.4725 -2.3530 0.5157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815210710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:56 Heat of formation + Delta-G solvation = -108.964654 kcal Electronic energy + Delta-G solvation = -25061.592674 eV Core-core repulsion = 21264.114797 eV Total energy + Delta-G solvation = -3797.477877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.73538 -41.29648 -38.89304 -38.54413 -37.53260 -34.98701 -34.26300 -32.58306 -31.76299 -30.92228 -29.17774 -28.43973 -26.72349 -25.46725 -24.57431 -23.48739 -22.17615 -21.97825 -21.21806 -19.50841 -18.75614 -18.37786 -18.02231 -17.52412 -17.15638 -16.49950 -16.34307 -16.14983 -16.07097 -15.74412 -15.35178 -14.89585 -14.63687 -14.44447 -14.30513 -14.15554 -13.88123 -13.77714 -13.48705 -13.32019 -13.28124 -12.96865 -12.74858 -12.73707 -12.53295 -12.24277 -12.12806 -11.94836 -11.89460 -11.83989 -11.71584 -11.32559 -10.93767 -10.82150 -10.31781 -9.22191 -8.69451 -8.35933 -6.48199 -0.46285 0.57700 0.83452 1.35093 1.37707 1.40025 1.52033 1.92048 1.94033 2.31108 2.80772 2.98009 3.00757 3.49181 3.63656 3.85698 3.97432 4.01912 4.05536 4.20105 4.26330 4.34270 4.37636 4.45574 4.57808 4.58710 4.68521 4.79816 4.81412 4.87269 4.93772 4.97900 5.04177 5.11834 5.15998 5.24951 5.28518 5.42680 5.50292 5.53883 5.61850 5.77564 5.91141 6.11408 6.32814 6.44035 6.49369 6.75247 7.23457 8.76120 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.002581 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.068003 B =10847.311609 C =12325.441460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.073 4.073 4 C -0.150 4.150 5 C 0.105 3.895 6 N -0.567 5.567 7 H 0.430 0.570 8 C 0.008 3.992 9 C 0.533 3.467 10 O -0.517 6.517 11 O -0.356 6.356 12 C 0.079 3.921 13 C 0.053 3.947 14 O -0.410 6.410 15 C 0.208 3.792 16 C -0.551 4.551 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.981 3.019 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.267 1.267 24 C -0.091 4.091 25 C -0.140 4.140 26 C -0.037 4.037 27 C -0.117 4.117 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.057 0.943 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.272 0.728 40 H 0.168 0.832 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.443 -5.362 -7.483 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.092 4.092 4 C -0.171 4.171 5 C -0.007 4.007 6 N -0.171 5.171 7 H 0.270 0.730 8 C -0.099 4.099 9 C 0.379 3.621 10 O -0.407 6.407 11 O -0.273 6.273 12 C 0.006 3.994 13 C -0.023 4.023 14 O -0.330 6.330 15 C 0.133 3.867 16 C -0.588 4.588 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.804 3.196 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.191 1.191 24 C -0.117 4.117 25 C -0.144 4.144 26 C -0.037 4.037 27 C -0.174 4.174 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.011 0.989 38 H 0.008 0.992 39 H 0.081 0.919 40 H 0.185 0.815 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.178 -5.590 -7.373 27.765 hybrid contribution 1.558 0.697 0.375 1.747 sum -24.620 -4.893 -6.998 26.059 Atomic orbital electron populations 1.20813 0.88853 1.03806 1.02987 1.19644 0.97724 0.91840 1.03564 1.21187 0.92409 0.98934 0.96669 1.20379 0.94591 0.94992 1.07093 1.18726 0.82649 0.96589 1.02699 1.42016 1.06911 1.05717 1.62431 0.73033 1.19002 0.91644 0.83458 1.15840 1.20159 0.83700 0.85550 0.72724 1.90855 1.87937 1.14308 1.47585 1.86640 1.15242 1.41860 1.83558 1.23314 0.78684 0.93062 1.04312 1.22665 0.96510 0.94782 0.88390 1.87864 1.51312 1.55886 1.37933 1.19873 0.84017 0.86483 0.96292 1.21360 1.12237 1.22182 1.03034 0.92358 1.25923 0.94125 0.97099 1.01902 1.70047 1.14723 1.34036 1.37879 0.85214 0.78815 0.77672 0.77912 1.19275 1.19717 1.19092 1.21062 0.88488 1.00134 1.02067 1.18193 0.94007 0.91823 1.10394 1.19333 0.90122 0.96934 0.97354 1.20894 1.00252 0.92904 1.03313 0.90593 0.90461 0.90513 0.82698 0.84399 0.90577 0.86781 0.89624 0.92460 0.98913 0.99200 0.91941 0.81466 0.89888 0.91543 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.15 71.23 0.65 -0.33 16 2 C -0.13 -2.00 5.84 -20.12 -0.12 -2.11 16 3 C -0.07 -1.15 9.66 22.31 0.22 -0.93 16 4 C -0.15 -2.95 10.08 22.37 0.23 -2.72 16 5 C 0.10 2.55 7.25 39.14 0.28 2.84 16 6 N -0.57 -14.92 6.19 -177.24 -1.10 -16.01 16 7 H 0.43 10.66 8.96 -92.71 -0.83 9.83 16 8 C 0.01 0.24 6.99 39.88 0.28 0.52 16 9 C 0.53 16.99 7.94 70.09 0.56 17.55 16 10 O -0.52 -17.62 16.63 19.61 0.33 -17.30 16 11 O -0.36 -12.00 10.20 -54.83 -0.56 -12.56 16 12 C 0.08 2.45 5.86 71.98 0.42 2.87 16 13 C 0.05 1.90 6.33 71.98 0.46 2.36 16 14 O -0.41 -19.99 10.30 -145.58 -1.50 -21.49 16 15 C 0.21 11.58 5.69 71.24 0.41 11.99 16 16 C -0.55 -32.86 9.43 25.60 0.24 -32.62 16 17 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 18 C 0.01 0.48 5.46 84.66 0.46 0.94 16 19 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 20 Si 0.98 44.33 29.54 68.60 2.03 46.35 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C -0.09 -2.29 10.12 22.55 0.23 -2.06 16 25 C -0.14 -3.33 5.98 -21.36 -0.13 -3.46 16 26 C -0.04 -0.68 5.88 -19.83 -0.12 -0.80 16 27 C -0.12 -1.51 9.07 71.24 0.65 -0.86 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 30 H 0.08 0.57 6.64 -2.38 -0.02 0.55 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.89 7.84 -2.39 -0.02 0.87 16 43 H 0.09 0.81 6.65 -2.39 -0.02 0.79 16 Total: -1.00 -72.32 371.79 4.39 -67.93 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.20 Total: 14.89 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.71 Total: -6.84 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.81 Total: -70.98 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -1.73 Total: -51.34 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.32 4.39 -67.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815210710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.039 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds