Wall clock time and date at job start Tue Mar 31 2020 11:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50702 * 126.50303 * 359.94650 * 7 6 5 9 9 C 1.50697 * 109.47166 * 85.01270 * 8 7 6 10 10 O 1.20829 * 119.99882 * 0.02562 * 9 8 7 11 11 O 1.34225 * 119.99934 * 180.02562 * 9 8 7 12 12 C 1.45206 * 116.99843 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46723 * 180.02562 * 12 11 9 14 14 O 1.42900 * 109.47250 * 65.00341 * 13 12 11 15 15 C 1.42901 * 113.99626 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46747 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00336 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99973 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00066 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99957 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47405 * 89.99732 * 20 18 16 22 22 H 1.48507 * 109.46710 * 209.99805 * 20 18 16 23 23 H 1.48501 * 109.46971 * 329.99259 * 20 18 16 24 24 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 25 25 N 1.36834 * 109.93838 * 359.97438 * 24 7 6 26 26 H 0.96999 * 125.06376 * 179.97438 * 25 24 7 27 27 C 1.37688 * 109.87351 * 0.02562 * 25 24 7 28 28 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 29 29 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 30 30 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 31 31 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 32 32 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 33 33 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 34 34 H 1.08998 * 109.47428 * 205.01973 * 8 7 6 35 35 H 1.09001 * 109.46663 * 325.01770 * 8 7 6 36 36 H 1.08996 * 109.46916 * 299.99543 * 12 11 9 37 37 H 1.09000 * 109.47326 * 59.99867 * 12 11 9 38 38 H 1.09008 * 109.46927 * 184.99905 * 13 12 11 39 39 H 1.08997 * 109.47642 * 304.99324 * 13 12 11 40 40 H 1.08996 * 109.47013 * 299.99053 * 15 14 13 41 41 H 1.08997 * 109.47661 * 59.99708 * 15 14 13 42 42 H 0.96999 * 119.99667 * 180.02562 * 19 18 16 43 43 H 1.07996 * 125.02834 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0019 9 6 5.9691 -3.1462 1.4172 10 8 5.2567 -2.8062 2.3321 11 8 7.2190 -3.5701 1.6615 12 6 7.6475 -3.5944 3.0487 13 6 9.0889 -4.1014 3.1283 14 8 9.9579 -3.1700 2.4805 15 6 11.3350 -3.5512 2.4978 16 6 12.1552 -2.5031 1.7906 17 1 11.6730 -1.6333 1.3697 18 6 13.5212 -2.6548 1.6811 19 7 14.2369 -1.7404 1.0635 20 14 14.3552 -4.1597 2.4085 21 1 14.4034 -5.2396 1.3904 22 1 15.7372 -3.8079 2.8228 23 1 13.5881 -4.6277 3.5907 24 6 2.9199 -3.3334 0.0020 25 7 1.8165 -2.5243 0.0018 26 1 0.8976 -2.8351 0.0015 27 6 2.2047 -1.2033 0.0010 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6547 2.1251 -0.0004 32 1 4.1127 2.1482 -0.0101 33 1 5.3715 0.0531 0.0013 34 1 5.4825 -4.0937 -0.4320 35 1 6.0798 -2.4243 -0.5880 36 1 7.5933 -2.5879 3.4633 37 1 6.9967 -4.2576 3.6184 38 1 9.3807 -4.2040 4.1735 39 1 9.1612 -5.0702 2.6341 40 1 11.6737 -3.6427 3.5298 41 1 11.4536 -4.5084 1.9902 42 1 15.1978 -1.8474 0.9861 43 1 2.8970 -4.4131 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815213627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:35 Heat of formation + Delta-G solvation = -81.506600 kcal Electronic energy + Delta-G solvation = -25059.182912 eV Core-core repulsion = 21262.895706 eV Total energy + Delta-G solvation = -3796.287206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55939 -40.10345 -37.35719 -37.11077 -36.00744 -33.86932 -32.68680 -31.97035 -30.28905 -29.47996 -27.82865 -27.21007 -26.96904 -22.75248 -22.24139 -22.02522 -21.86559 -21.17358 -19.03750 -17.95559 -17.57051 -16.95181 -16.70008 -16.28183 -16.00094 -15.56136 -15.30753 -14.80562 -14.77204 -14.53439 -14.34526 -13.60896 -13.55046 -13.47236 -13.21124 -13.07971 -12.76121 -12.57734 -12.48864 -12.27676 -12.03441 -11.68200 -11.61347 -11.45960 -11.12728 -10.96873 -10.85402 -10.64223 -10.39696 -10.27901 -9.86452 -9.56894 -9.19362 -8.89139 -8.49480 -8.34395 -7.75944 -6.11097 -4.10261 0.96375 1.51938 2.28882 2.42262 2.89016 3.10617 3.24834 3.31730 3.32642 3.78882 4.35356 4.50313 4.51566 4.52323 4.66038 4.82377 4.91413 5.01372 5.07657 5.10519 5.19926 5.21289 5.25094 5.40516 5.42364 5.43109 5.46072 5.63383 5.71456 5.73592 5.76579 5.84097 6.00825 6.02669 6.38278 6.48454 6.52995 6.56936 6.60445 6.70382 6.97931 7.02191 7.30892 7.58451 7.95550 8.00840 8.64779 9.00620 9.47679 11.01883 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.002261 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.594614 B =12380.628810 C =13119.991370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.141 4.141 5 C -0.072 4.072 6 C -0.086 4.086 7 C -0.160 4.160 8 C -0.038 4.038 9 C 0.458 3.542 10 O -0.507 6.507 11 O -0.344 6.344 12 C 0.075 3.925 13 C 0.058 3.942 14 O -0.375 6.375 15 C 0.168 3.832 16 C -0.519 4.519 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.267 1.267 24 C 0.068 3.932 25 N -0.593 5.593 26 H 0.414 0.586 27 C 0.098 3.902 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.004 0.996 41 H 0.001 0.999 42 H 0.266 0.734 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.634 -2.597 -2.837 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.161 4.161 5 C -0.090 4.090 6 C -0.091 4.091 7 C -0.168 4.168 8 C -0.076 4.076 9 C 0.301 3.699 10 O -0.395 6.395 11 O -0.260 6.260 12 C 0.001 3.999 13 C -0.020 4.020 14 O -0.294 6.294 15 C 0.093 3.907 16 C -0.557 4.557 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.059 4.059 25 N -0.195 5.195 26 H 0.251 0.749 27 C -0.008 4.008 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -28.799 -2.347 -2.672 29.018 hybrid contribution 0.296 -1.177 0.720 1.411 sum -28.504 -3.524 -1.952 28.787 Atomic orbital electron populations 1.20670 0.91469 1.02475 1.01954 1.18830 0.95184 0.90243 1.06146 1.20694 0.94178 0.96284 1.00989 1.20629 0.93940 0.97975 1.03508 1.20337 0.99846 0.90587 0.98264 1.18967 0.91813 0.92955 1.05357 1.19541 0.92977 0.91385 1.12854 1.19543 0.92405 1.04519 0.91121 1.23730 0.79853 0.73732 0.92622 1.90652 1.57741 1.44332 1.46796 1.86595 1.30891 1.77129 1.31406 1.23124 0.94441 1.02849 0.79466 1.22400 0.88404 0.93839 0.97348 1.87981 1.18794 1.45222 1.77400 1.20633 0.78123 0.96303 0.95654 1.20880 0.91364 1.07401 1.36014 0.89899 1.24775 0.96833 0.96472 0.94943 1.69877 1.06681 1.34276 1.42462 0.86842 0.79260 0.83476 0.80107 1.19897 1.20785 1.19136 1.21538 0.85058 0.96158 1.03107 1.41621 1.08310 1.04122 1.65490 0.74898 1.17995 0.93517 0.84516 1.04790 0.91471 0.92576 0.91214 0.85909 0.85899 0.85957 0.87021 0.86683 0.90474 0.90503 0.91960 0.93088 0.97880 0.98176 0.92354 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.02 36.01 0.36 -0.37 16 2 C -0.10 -1.01 5.89 -104.47 -0.62 -1.63 16 3 C -0.10 -1.02 9.67 -39.54 -0.38 -1.40 16 4 C -0.14 -1.56 9.97 -39.95 -0.40 -1.96 16 5 C -0.07 -0.91 10.05 -39.65 -0.40 -1.31 16 6 C -0.09 -1.12 6.35 -105.14 -0.67 -1.79 16 7 C -0.16 -1.86 4.81 -102.71 -0.49 -2.35 16 8 C -0.04 -0.42 6.34 -29.04 -0.18 -0.60 16 9 C 0.46 6.80 7.95 36.00 0.29 7.09 16 10 O -0.51 -8.76 15.78 -18.75 -0.30 -9.06 16 11 O -0.34 -5.66 10.19 -42.01 -0.43 -6.09 16 12 C 0.07 1.18 5.85 37.16 0.22 1.40 16 13 C 0.06 1.01 6.33 37.16 0.24 1.24 16 14 O -0.37 -8.83 10.30 -38.79 -0.40 -9.23 16 15 C 0.17 4.27 4.76 36.01 0.17 4.44 16 16 C -0.52 -15.51 9.99 -34.44 -0.34 -15.85 16 17 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.89 -27.64 13.96 55.43 0.77 -26.87 16 20 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 24 C 0.07 0.62 11.73 -16.73 -0.20 0.42 16 25 N -0.59 -5.14 6.07 -10.65 -0.06 -5.20 16 26 H 0.41 2.24 8.87 -40.82 -0.36 1.87 16 27 C 0.10 1.11 6.95 -83.99 -0.58 0.52 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.33 7.99 -51.93 -0.42 -0.09 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 41 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -36.72 371.94 -8.77 -45.49 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.20 Total: -1.17 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.09 Total: -10.13 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.71 Total: -32.07 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.12 Total: -24.38 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.72 -8.77 -45.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.015 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds