Wall clock time and date at job start Tue Mar 31 2020 11:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50702 * 126.50303 * 359.94650 * 7 6 5 9 9 C 1.50697 * 109.47166 * 85.01270 * 8 7 6 10 10 O 1.20829 * 119.99882 * 0.02562 * 9 8 7 11 11 O 1.34225 * 119.99934 * 180.02562 * 9 8 7 12 12 C 1.45206 * 116.99843 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46723 * 180.02562 * 12 11 9 14 14 O 1.42900 * 109.47250 * 65.00341 * 13 12 11 15 15 C 1.42901 * 113.99626 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46747 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00336 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99973 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00066 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99957 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47405 * 89.99732 * 20 18 16 22 22 H 1.48507 * 109.46710 * 209.99805 * 20 18 16 23 23 H 1.48501 * 109.46971 * 329.99259 * 20 18 16 24 24 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 25 25 N 1.36834 * 109.93838 * 359.97438 * 24 7 6 26 26 H 0.96999 * 125.06376 * 179.97438 * 25 24 7 27 27 C 1.37688 * 109.87351 * 0.02562 * 25 24 7 28 28 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 29 29 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 30 30 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 31 31 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 32 32 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 33 33 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 34 34 H 1.08998 * 109.47428 * 205.01973 * 8 7 6 35 35 H 1.09001 * 109.46663 * 325.01770 * 8 7 6 36 36 H 1.08996 * 109.46916 * 299.99543 * 12 11 9 37 37 H 1.09000 * 109.47326 * 59.99867 * 12 11 9 38 38 H 1.09008 * 109.46927 * 184.99905 * 13 12 11 39 39 H 1.08997 * 109.47642 * 304.99324 * 13 12 11 40 40 H 1.08996 * 109.47013 * 299.99053 * 15 14 13 41 41 H 1.08997 * 109.47661 * 59.99708 * 15 14 13 42 42 H 0.96999 * 119.99667 * 180.02562 * 19 18 16 43 43 H 1.07996 * 125.02834 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0019 9 6 5.9691 -3.1462 1.4172 10 8 5.2567 -2.8062 2.3321 11 8 7.2190 -3.5701 1.6615 12 6 7.6475 -3.5944 3.0487 13 6 9.0889 -4.1014 3.1283 14 8 9.9579 -3.1700 2.4805 15 6 11.3350 -3.5512 2.4978 16 6 12.1552 -2.5031 1.7906 17 1 11.6730 -1.6333 1.3697 18 6 13.5212 -2.6548 1.6811 19 7 14.2369 -1.7404 1.0635 20 14 14.3552 -4.1597 2.4085 21 1 14.4034 -5.2396 1.3904 22 1 15.7372 -3.8079 2.8228 23 1 13.5881 -4.6277 3.5907 24 6 2.9199 -3.3334 0.0020 25 7 1.8165 -2.5243 0.0018 26 1 0.8976 -2.8351 0.0015 27 6 2.2047 -1.2033 0.0010 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6547 2.1251 -0.0004 32 1 4.1127 2.1482 -0.0101 33 1 5.3715 0.0531 0.0013 34 1 5.4825 -4.0937 -0.4320 35 1 6.0798 -2.4243 -0.5880 36 1 7.5933 -2.5879 3.4633 37 1 6.9967 -4.2576 3.6184 38 1 9.3807 -4.2040 4.1735 39 1 9.1612 -5.0702 2.6341 40 1 11.6737 -3.6427 3.5298 41 1 11.4536 -4.5084 1.9902 42 1 15.1978 -1.8474 0.9861 43 1 2.8970 -4.4131 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815213627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:34 Heat of formation + Delta-G solvation = -104.729902 kcal Electronic energy + Delta-G solvation = -25060.189950 eV Core-core repulsion = 21262.895706 eV Total energy + Delta-G solvation = -3797.294244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34159 -41.28800 -38.81553 -38.04885 -37.35181 -34.88510 -34.66329 -32.82098 -31.74496 -30.30026 -29.62120 -28.25854 -27.63868 -24.15627 -23.84447 -23.00209 -22.80512 -22.34844 -19.89550 -19.09121 -18.75379 -18.71348 -17.95028 -17.34191 -17.20192 -16.90674 -16.47565 -16.22426 -16.20984 -15.53909 -15.27921 -14.88577 -14.63201 -14.47544 -14.32613 -14.12648 -13.95165 -13.66565 -13.59777 -13.30783 -13.20401 -12.99943 -12.79523 -12.62151 -12.39217 -12.27039 -12.22815 -11.84156 -11.74369 -11.68129 -11.50621 -11.33979 -10.92413 -10.41152 -10.35369 -9.14455 -8.53575 -8.36178 -6.44738 0.16541 0.68325 1.25898 1.35060 1.38892 1.42354 1.49514 2.07097 2.25740 2.30934 2.94018 2.95983 2.97294 3.73295 3.80179 3.86749 3.95414 4.01494 4.11840 4.13262 4.28064 4.31775 4.39926 4.42176 4.51006 4.59378 4.64190 4.66614 4.71173 4.76034 4.78831 4.95055 5.00654 5.02423 5.03550 5.29693 5.43391 5.49380 5.60801 5.67582 5.73628 5.79652 5.92237 6.23170 6.59064 6.71332 6.71433 6.82830 7.19384 8.81091 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.002261 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.594614 B =12380.628810 C =13119.991370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C -0.115 4.115 4 C -0.147 4.147 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.200 4.200 8 C -0.031 4.031 9 C 0.458 3.542 10 O -0.536 6.536 11 O -0.361 6.361 12 C 0.074 3.926 13 C 0.051 3.949 14 O -0.408 6.408 15 C 0.178 3.822 16 C -0.548 4.548 17 H 0.026 0.974 18 C 0.010 3.990 19 N -0.943 5.943 20 Si 0.960 3.040 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.242 1.242 24 C 0.089 3.911 25 N -0.580 5.580 26 H 0.431 0.569 27 C 0.079 3.921 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.273 0.727 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.373 -5.573 -2.057 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.134 4.134 4 C -0.166 4.166 5 C -0.127 4.127 6 C -0.121 4.121 7 C -0.207 4.207 8 C -0.068 4.068 9 C 0.303 3.697 10 O -0.425 6.425 11 O -0.277 6.277 12 C 0.001 3.999 13 C -0.026 4.026 14 O -0.328 6.328 15 C 0.103 3.897 16 C -0.586 4.586 17 H 0.045 0.955 18 C -0.188 4.188 19 N -0.582 5.582 20 Si 0.780 3.220 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.165 1.165 24 C -0.039 4.039 25 N -0.184 5.184 26 H 0.271 0.729 27 C -0.028 4.028 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.165 0.835 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -30.592 -5.321 -1.895 31.109 hybrid contribution 0.717 -0.145 0.435 0.851 sum -29.876 -5.465 -1.461 30.406 Atomic orbital electron populations 1.20734 0.88885 1.03602 1.03098 1.19283 0.97097 0.89727 1.04247 1.21026 0.93753 0.97628 1.01024 1.20879 0.94937 0.97907 1.02920 1.20429 0.99500 0.91825 1.00925 1.19353 0.93193 0.93656 1.05862 1.19710 0.93843 0.91290 1.15822 1.19632 0.92241 1.06358 0.88593 1.24498 0.78923 0.72459 0.93848 1.90625 1.58267 1.45618 1.48004 1.86600 1.31923 1.77408 1.31792 1.23165 0.94280 1.02687 0.79784 1.22756 0.87856 0.93407 0.98545 1.87928 1.18505 1.47670 1.78673 1.20368 0.78770 0.94941 0.95658 1.21172 0.92762 1.07356 1.37287 0.95545 1.25911 0.97306 1.00611 0.94969 1.70045 1.07432 1.36981 1.43771 0.85553 0.77995 0.78285 0.80149 1.18246 1.19984 1.16499 1.22131 0.84213 0.97695 0.99850 1.41652 1.09263 1.03180 1.64330 0.72885 1.18225 0.93117 0.85943 1.05486 0.90158 0.91509 0.90080 0.83416 0.84862 0.87397 0.83533 0.87079 0.92155 0.87276 0.89343 0.91276 0.96438 0.96582 0.91794 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.02 71.24 0.71 -0.46 16 2 C -0.10 -1.92 5.89 -19.77 -0.12 -2.03 16 3 C -0.12 -2.26 9.67 22.29 0.22 -2.05 16 4 C -0.15 -3.45 9.97 22.03 0.22 -3.23 16 5 C -0.11 -3.00 10.05 22.23 0.22 -2.78 16 6 C -0.12 -3.11 6.35 -20.20 -0.13 -3.24 16 7 C -0.20 -4.57 4.81 -18.63 -0.09 -4.66 16 8 C -0.03 -0.68 6.34 29.10 0.18 -0.49 16 9 C 0.46 13.71 7.95 71.23 0.57 14.28 16 10 O -0.54 -18.73 15.78 21.95 0.35 -18.39 16 11 O -0.36 -11.88 10.19 -48.73 -0.50 -12.37 16 12 C 0.07 2.29 5.85 71.98 0.42 2.71 16 13 C 0.05 1.69 6.33 71.98 0.46 2.14 16 14 O -0.41 -19.32 10.30 -145.57 -1.50 -20.82 16 15 C 0.18 8.93 4.76 71.24 0.34 9.27 16 16 C -0.55 -33.86 9.99 25.60 0.26 -33.61 16 17 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 18 C 0.01 0.58 5.47 84.65 0.46 1.05 16 19 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 20 Si 0.96 43.11 27.47 68.60 1.88 44.99 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 24 C 0.09 1.43 11.73 83.00 0.97 2.40 16 25 N -0.58 -8.91 6.07 -187.61 -1.14 -10.05 16 26 H 0.43 3.45 8.87 -92.71 -0.82 2.63 16 27 C 0.08 1.74 6.95 39.03 0.27 2.01 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.60 7.99 -2.39 -0.02 0.58 16 30 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 31 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.11 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.03 8.13 -2.39 -0.02 2.02 16 37 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 38 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 40 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 41 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 42 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 43 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -84.17 371.94 4.51 -79.66 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.15 Total: 15.27 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 4.97 Total: -18.69 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.84 Total: -69.65 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -1.65 Total: -51.58 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -84.17 4.51 -79.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.065 kcal (2) G-P(sol) polarization free energy of solvation -84.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds