Wall clock time and date at job start Tue Mar 31 2020 11:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46970 * 270.00479 * 3 2 1 5 5 H 1.48503 * 109.46978 * 30.00136 * 3 2 1 6 6 H 1.48492 * 109.47388 * 150.00147 * 3 2 1 7 7 C 1.37877 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00297 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00162 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.42896 * 113.99874 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47248 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47459 * 64.99770 * 12 11 10 14 14 C 1.34703 * 117.00214 * 179.97438 * 13 12 11 15 15 O 1.21470 * 120.00277 * 0.02562 * 14 13 12 16 16 C 1.47742 * 119.99828 * 179.97438 * 14 13 12 17 17 C 1.39663 * 120.11447 * 0.02808 * 16 14 13 18 18 C 1.37976 * 119.99730 * 179.97438 * 17 16 14 19 19 C 1.38247 * 120.23288 * 359.74075 * 18 17 16 20 20 C 1.38990 * 120.23288 * 0.51565 * 19 18 17 21 21 N 1.39712 * 120.00147 * 179.76171 * 20 19 18 22 22 C 1.48229 * 111.00245 * 239.84622 * 21 20 19 23 23 C 1.51115 * 105.36076 * 215.10286 * 22 21 20 24 24 C 1.30967 * 109.45938 * 16.97986 * 23 22 21 25 25 C 1.48235 * 110.99683 * 126.21335 * 21 20 19 26 26 C 1.38664 * 119.99617 * 359.48724 * 20 19 18 27 27 H 0.97000 * 120.00325 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46701 * 59.99848 * 9 7 2 29 29 H 1.09008 * 109.46905 * 300.00405 * 9 7 2 30 30 H 1.08998 * 109.47480 * 59.99617 * 11 10 9 31 31 H 1.09008 * 109.46907 * 299.99864 * 11 10 9 32 32 H 1.09004 * 109.47276 * 304.99593 * 12 11 10 33 33 H 1.09008 * 109.47734 * 185.00003 * 12 11 10 34 34 H 1.07992 * 120.00442 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.87916 * 180.02562 * 18 17 16 36 36 H 1.08009 * 119.88624 * 180.25415 * 19 18 17 37 37 H 1.09001 * 110.26443 * 96.13254 * 22 21 20 38 38 H 1.08997 * 110.26495 * 334.07804 * 22 21 20 39 39 H 1.08000 * 125.26778 * 197.23471 * 23 22 21 40 40 H 1.07993 * 125.27082 * 179.97438 * 24 23 22 41 41 H 1.08994 * 110.26796 * 25.92505 * 25 21 20 42 42 H 1.09007 * 110.26569 * 263.86980 * 25 21 20 43 43 H 1.07996 * 120.11829 * 180.27350 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9561 -0.0017 13 8 3.3996 -5.8892 1.2390 14 6 4.3972 -6.7801 1.3986 15 8 4.6334 -7.5906 0.5252 16 6 5.2050 -6.7708 2.6357 17 6 4.9359 -5.8397 3.6413 18 6 5.6914 -5.8336 4.7958 19 6 6.7124 -6.7503 4.9645 20 6 6.9919 -7.6777 3.9677 21 7 8.0281 -8.5988 4.1411 22 6 9.0535 -8.4506 3.0811 23 6 9.5489 -9.8513 2.8048 24 6 8.6962 -10.7192 3.2895 25 6 7.5454 -9.9856 3.9385 26 6 6.2388 -7.6925 2.8035 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.9453 -4.9822 -0.8913 31 1 0.9448 -4.9827 0.8887 32 1 3.3217 -5.7952 -0.8436 33 1 2.1823 -6.9375 -0.0917 34 1 4.1365 -5.1246 3.5153 35 1 5.4814 -5.1130 5.5724 36 1 7.2976 -6.7431 5.8722 37 1 9.8724 -7.8231 3.4330 38 1 8.6086 -8.0233 2.1825 39 1 10.4662 -10.0983 2.2911 40 1 8.7993 -11.7927 3.2337 41 1 6.6759 -9.9905 3.2814 42 1 7.2983 -10.4431 4.8965 43 1 6.4514 -8.4151 2.0297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815214144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:08 Heat of formation + Delta-G solvation = -63.638730 kcal Electronic energy + Delta-G solvation = -25144.291417 eV Core-core repulsion = 21348.779020 eV Total energy + Delta-G solvation = -3795.512397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04069 -40.14374 -38.19228 -37.03295 -36.02321 -33.30629 -32.78401 -31.61528 -30.09388 -28.86345 -28.80095 -26.97277 -24.78604 -23.72051 -22.48077 -22.08670 -21.41492 -20.66839 -19.78655 -18.30080 -17.26953 -16.59883 -16.51529 -16.46391 -16.03315 -15.79356 -15.34320 -14.84498 -14.64850 -14.44436 -14.24816 -14.11273 -13.60855 -13.39615 -13.26909 -12.93026 -12.69126 -12.65673 -12.18729 -12.11338 -11.98836 -11.70704 -11.59009 -11.44153 -10.96530 -10.86849 -10.79991 -10.54248 -10.41367 -10.09714 -10.04031 -9.30316 -9.15048 -9.01994 -8.90063 -8.78753 -8.23659 -6.13739 -4.15485 0.51510 0.94306 1.75394 2.45854 2.67690 3.28986 3.34041 3.39516 3.44653 3.49634 4.25220 4.30604 4.42285 4.52275 4.62084 4.71005 4.81386 4.95335 5.02327 5.08536 5.11561 5.16407 5.19554 5.22859 5.26880 5.30849 5.42822 5.50235 5.56294 5.82802 5.86582 5.93943 5.97952 6.00796 6.06517 6.08864 6.15138 6.39857 6.40724 6.51224 6.93129 7.02959 7.37393 7.75803 7.78278 8.10393 8.49905 8.97045 9.49348 10.97752 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.002371 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.452051 B =11805.020124 C =12514.942573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.334 6.334 14 C 0.507 3.493 15 O -0.515 6.515 16 C -0.112 4.112 17 C -0.057 4.057 18 C -0.124 4.124 19 C -0.058 4.058 20 C 0.057 3.943 21 N -0.465 5.465 22 C 0.052 3.948 23 C -0.166 4.166 24 C -0.168 4.168 25 C 0.050 3.950 26 C -0.088 4.088 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.462 -20.185 9.588 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.250 6.250 14 C 0.352 3.648 15 O -0.406 6.406 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.077 4.077 20 C -0.038 4.038 21 N -0.186 5.186 22 C -0.074 4.074 23 C -0.185 4.185 24 C -0.187 4.187 25 C -0.076 4.076 26 C -0.108 4.108 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.750 -20.142 9.864 26.843 hybrid contribution -0.359 0.625 -1.076 1.295 sum 14.391 -19.518 8.788 25.793 Atomic orbital electron populations 1.69958 1.06094 1.27213 1.50501 1.24951 0.94996 0.99461 0.95112 0.86326 0.79680 0.82184 0.78256 1.20462 1.21047 1.19588 1.21042 0.94088 0.89273 1.50887 0.91520 1.20242 0.88739 0.83486 0.95522 1.87920 1.35317 1.12591 1.95230 1.22325 0.93182 0.85446 1.00652 1.23261 0.93632 0.98915 0.84023 1.86634 1.43142 1.53502 1.41711 1.21158 0.78875 0.78210 0.86564 1.90802 1.68276 1.38376 1.43123 1.19032 0.98356 1.00176 0.93772 1.21712 0.98200 0.95837 0.91731 1.21197 0.95710 0.99311 0.98071 1.21249 0.95915 0.92484 0.98045 1.18857 0.94433 0.96625 0.93844 1.63342 1.09099 1.01663 1.44478 1.22256 0.95431 0.96468 0.93264 1.23578 0.99903 0.94448 1.00549 1.23562 0.95836 0.99695 0.99579 1.22272 0.96584 0.87597 1.01098 1.21718 0.93875 0.97569 0.97637 0.92619 0.97604 0.97471 0.91836 0.93121 0.90370 0.90315 0.83513 0.84358 0.84600 0.88976 0.91566 0.84364 0.84389 0.91543 0.89046 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -15.11 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.27 5.69 36.01 0.20 5.48 16 10 O -0.39 -9.40 10.30 -38.79 -0.40 -9.80 16 11 C 0.06 1.12 6.33 37.16 0.24 1.35 16 12 C 0.08 1.20 5.85 37.16 0.22 1.42 16 13 O -0.33 -5.66 9.44 -43.28 -0.41 -6.07 16 14 C 0.51 8.04 7.90 34.61 0.27 8.31 16 15 O -0.52 -8.95 16.13 -19.24 -0.31 -9.26 16 16 C -0.11 -1.49 5.87 -105.01 -0.62 -2.10 16 17 C -0.06 -0.67 9.61 -39.15 -0.38 -1.05 16 18 C -0.12 -1.19 10.02 -39.67 -0.40 -1.58 16 19 C -0.06 -0.54 9.96 -39.30 -0.39 -0.93 16 20 C 0.06 0.59 4.91 -83.83 -0.41 0.18 16 21 N -0.46 -4.43 5.58 -171.20 -0.96 -5.38 16 22 C 0.05 0.45 6.47 -4.04 -0.03 0.42 16 23 C -0.17 -1.22 10.95 -35.81 -0.39 -1.61 16 24 C -0.17 -1.21 10.95 -35.82 -0.39 -1.61 16 25 C 0.05 0.42 6.44 -4.04 -0.03 0.40 16 26 C -0.09 -1.04 7.23 -38.95 -0.28 -1.32 16 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.15 1.79 7.60 -52.49 -0.40 1.39 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.63 6.75 -51.93 -0.35 0.28 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.07 0.60 6.30 -51.93 -0.33 0.27 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.13 1.62 6.62 -52.49 -0.35 1.27 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -33.27 369.41 -9.64 -42.91 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -6.04 Total: -2.19 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.80 Total: -6.57 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: -0.22 Total: -31.32 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.12 Total: -25.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.27 -9.64 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.731 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds